Rmu_co8463919.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8463919.1
OG0000633
Physical Location & Seq
Forward (+)
1 .. 1805
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8463919.1_g000001.1.cds

Sequence Viewer

Length: 993 bp
caccccgaggccccagttcaggtagctccggtatcggagttggagtttatgcgagcggagatcgcagccttcagggaacaagccagaattgatcgggaacaacgaagaaccgatagggaaacaaaccacctttcacaacaaagactacaggagttggaagacgaaaacaccgcgctggcccgagcgcagtacaggaggcaccagcacaatgaggcactcacccaagccctggctagagcatcccaaatagcaacagatgcaagggtagaggcaacggagagtagggacacccggagagccctgaccacgtacgaggatcgtccgggtccctttacccaagaagtcagaggcgccattcgagcgaatatatcaaagccactgaagattgactatacgggagcggctaccgctaagtgctgggatcttaataaggaactggcggagctggctttcaggtggggcttaaggcgtggagaatttctctacgagattaatcataaccctccggctaactacgtcgagctgatggctacggccatcagacacgcccaggctgaattagaaatgtatgggaacacccccagaccagagctaaggacccccggcctcgatgttatggaaccacccagcctcaccaggagcagagggcacaacgagccccgcgaacgccacccccaccccggtatgaggtgttcactatcctcaacgcttcatatgagactatttggaacgagagcaaggatgagatacctggaccaccaccgagaaagttcccgaagagtaaacttacccagcaggataccagaaggttataggggcaagcttcagtggtacttgcctgctaaggagataggagctatagacgtgtacgaccagatcttcacgatccacggtgggggctcgaaagagctacctccccagaggaagaagcgaaactctagtttcagtcacctggaagttttcaacttccacaaggcccgctacaagagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

330

Amino Acids

38.2

Weight (kDa)

9.68

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 198, 350
AccB7I CCANNNNNTGG 1 cut(s) 229
AccBSI CCGCTC 2 cut(s) 56, 401
AccII CGCG 2 cut(s) 173, 663
AciI CCGC 7 cut(s) 56, 171, 401, 408, 440, 661, 979
AclWI GGATC 3 cut(s) 324, 429, 880
AcoI YGGCCR 1 cut(s) 534
AcsI RAATTY 1 cut(s) 476
AcuI CTGAAG 3 cut(s) 55, 401, 809
AcyI GRCGYC 1 cut(s) 351
AfaI GTAC 4 cut(s) 191, 311, 833, 869
AfiI CCNNNNNNNGG 5 cut(s) 19, 229, 680, 687, 895
AflII CTTAAG 1 cut(s) 463
AflIII ACRYGT 1 cut(s) 864
AgsI TTSAA 1 cut(s) 964
AjiI CACGTC 1 cut(s) 865
AjnI CCWGG 5 cut(s) 228, 549, 635, 750, 951
AluBI AGCT 7 cut(s) 26, 445, 523, 592, 823, 857, 910
AluI AGCT 7 cut(s) 26, 445, 523, 592, 823, 857, 910
Alw26I GTCTC 1 cut(s) 712
AlwI GGATC 3 cut(s) 324, 429, 880
Ama87I CYCGRG 2 cut(s) 5, 180
AoxI GGCC 5 cut(s) 9, 177, 534, 604, 975
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 476
AseI ATTAAT 1 cut(s) 492
AspLEI GCGC 3 cut(s) 175, 187, 353
AspS9I GGNCC 6 cut(s) 10, 178, 326, 597, 754, 976
AsuC2I CCSGG 4 cut(s) 292, 324, 603, 681
AsuHPI GGTGA 3 cut(s) 211, 625, 941
AvaI CYCGRG 2 cut(s) 5, 180
AvaII GGWCC 3 cut(s) 326, 597, 754
BaeGI GKGCMC 1 cut(s) 651
BanI GGYRCC 2 cut(s) 198, 350
BanII GRGCYC 3 cut(s) 301, 660, 902
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 77
BccI CCATC 2 cut(s) 520, 545
BceAI ACGGC 1 cut(s) 549
BciT130I CCWGG 5 cut(s) 230, 551, 637, 752, 953
BciVI GTATCC 1 cut(s) 792
BcnI CCSGG 4 cut(s) 292, 324, 603, 681
BcoDI GTCTC 1 cut(s) 712
BfaI CTAG 2 cut(s) 234, 939
BfmI CTRYAG 2 cut(s) 146, 858
BfoI RGCGCY 1 cut(s) 354
BfrI CTTAAG 1 cut(s) 463
BfuI GTATCC 1 cut(s) 792
BglII AGATCT 1 cut(s) 876
BisI GCNGC 2 cut(s) 66, 402
BlsI GCNGC 2 cut(s) 67, 403
Bme1390I CCNGG 9 cut(s) 230, 292, 324, 551, 603, 637, 681, 752, 953
Bme18I GGWCC 3 cut(s) 326, 597, 754
BmeT110I CYCGRG 2 cut(s) 5, 180
BmgBI CACGTC 1 cut(s) 865
BmgT120I GGNCC 6 cut(s) 10, 178, 326, 597, 754, 976
BmiI GGNNCC 7 cut(s) 12, 200, 327, 328, 352, 599, 621
BmrFI CCNGG 9 cut(s) 230, 292, 324, 551, 603, 637, 681, 752, 953
BmrI ACTGGG 1 cut(s) 8
BmsI GCATC 2 cut(s) 247, 248
BmuI ACTGGG 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 165
BplI GAGNNNNNCTC 2 cut(s) 465, 497
Bpu10I CCTNAGC 2 cut(s) 593, 843
BpuMI CCSGG 4 cut(s) 292, 324, 603, 681
BsaAI YACGTR 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 351
BsaJI CCNNGG 6 cut(s) 6, 228, 549, 601, 679, 889
BsaWI WCCGGW 1 cut(s) 28
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 5 cut(s) 19, 229, 680, 687, 895
Bse1I ACTGG 2 cut(s) 14, 441
BseBI CCWGG 5 cut(s) 230, 551, 637, 752, 953
BseDI CCNNGG 6 cut(s) 6, 228, 549, 601, 679, 889
BseGI GGATG 2 cut(s) 239, 747
BseLI CCNNNNNNNGG 5 cut(s) 19, 229, 680, 687, 895
BseNI ACTGG 2 cut(s) 14, 441
BseSI GKGCMC 1 cut(s) 651
BseXI GCAGC 1 cut(s) 77
BseYI CCCAGC 3 cut(s) 417, 626, 791
Bsh1236I CGCG 2 cut(s) 173, 663
BshFI GGCC 5 cut(s) 11, 179, 536, 606, 977
BshNI GGYRCC 2 cut(s) 198, 350
BsiHKCI CYCGRG 2 cut(s) 5, 180
BsiSI CCGG 6 cut(s) 29, 292, 323, 506, 603, 681
BsiWI CGTACG 1 cut(s) 309
BslFI GGGAC 2 cut(s) 299, 312
BslI CCNNNNNNNGG 5 cut(s) 19, 229, 680, 687, 895
BsmAI GTCTC 1 cut(s) 712
BsmFI GGGAC 2 cut(s) 299, 312
BsnI GGCC 5 cut(s) 11, 179, 536, 606, 977
BsoBI CYCGRG 2 cut(s) 5, 180
Bsp1286I GDGCHC 4 cut(s) 301, 651, 660, 902
Bsp143I GATC 6 cut(s) 60, 91, 316, 421, 876, 885
BspACI CCGC 7 cut(s) 56, 171, 401, 408, 440, 661, 979
BspANI GGCC 5 cut(s) 11, 179, 536, 606, 977
BspFNI CGCG 2 cut(s) 173, 663
BspLI GGNNCC 7 cut(s) 12, 200, 327, 328, 352, 599, 621
BspPI GGATC 3 cut(s) 324, 429, 880
BspT107I GGYRCC 2 cut(s) 198, 350
BspTI CTTAAG 1 cut(s) 463
BsrBI CCGCTC 2 cut(s) 56, 401
BsrI ACTGG 2 cut(s) 14, 441
BssECI CCNNGG 6 cut(s) 6, 228, 549, 601, 679, 889
BssMI GATC 6 cut(s) 60, 91, 316, 421, 876, 885
BssNI GRCGYC 1 cut(s) 351
Bst2UI CCWGG 5 cut(s) 230, 551, 637, 752, 953
Bst4CI ACNGT 1 cut(s) 893
Bst6I CTCTTC 1 cut(s) 772
BstACI GRCGYC 1 cut(s) 351
BstAFI CTTAAG 1 cut(s) 463
BstAPI GCANNNNNTGC 1 cut(s) 257
BstBAI YACGTR 1 cut(s) 309
BstC8I GCNNGC 6 cut(s) 54, 177, 447, 821, 840, 979
BstDEI CTNAG 3 cut(s) 411, 593, 843
BstDSI CCRYGG 1 cut(s) 889
BstF5I GGATG 2 cut(s) 239, 747
BstFNI CGCG 2 cut(s) 173, 663
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 3 cut(s) 175, 187, 353
BstKTI GATC 6 cut(s) 63, 94, 319, 424, 879, 888
BstMAI GTCTC 1 cut(s) 712
BstMBI GATC 6 cut(s) 60, 91, 316, 421, 876, 885
BstMWI GCNNNNNNNGC 6 cut(s) 62, 257, 359, 407, 446, 655
BstNI CCWGG 5 cut(s) 230, 551, 637, 752, 953
BstSCI CCNGG 9 cut(s) 228, 290, 322, 549, 601, 635, 679, 750, 951
BstSFI CTRYAG 2 cut(s) 146, 858
BstSLI GKGCMC 1 cut(s) 651
BstUI CGCG 2 cut(s) 173, 663
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 2 cut(s) 421, 876
BstYI RGATCY 2 cut(s) 421, 876
BsuI GTATCC 1 cut(s) 792
BsuRI GGCC 5 cut(s) 11, 179, 536, 606, 977
BtgI CCRYGG 1 cut(s) 889
BtrI CACGTC 1 cut(s) 865
BtsCI GGATG 2 cut(s) 239, 747
BtsIMutI CAGTG 2 cut(s) 377, 833
Cac8I GCNNGC 6 cut(s) 54, 177, 447, 821, 840, 979
CfoI GCGC 3 cut(s) 175, 187, 353
Cfr13I GGNCC 6 cut(s) 10, 178, 326, 597, 754, 976
Csp6I GTAC 4 cut(s) 190, 310, 832, 868
CviQI GTAC 4 cut(s) 190, 310, 832, 868
DdeI CTNAG 3 cut(s) 411, 593, 843
DinI GGCGCC 1 cut(s) 352
DpnI GATC 6 cut(s) 62, 93, 318, 423, 878, 887
DpnII GATC 6 cut(s) 60, 91, 316, 421, 876, 885
EaeI YGGCCR 1 cut(s) 534
Eam1104I CTCTTC 1 cut(s) 772
EarI CTCTTC 1 cut(s) 772
EciI GGCGGA 1 cut(s) 455
Eco24I GRGCYC 3 cut(s) 301, 660, 902
Eco47I GGWCC 3 cut(s) 326, 597, 754
Eco57I CTGAAG 3 cut(s) 55, 401, 809
Eco88I CYCGRG 2 cut(s) 5, 180
EcoO109I RGGNCCY 3 cut(s) 10, 326, 597
EcoRII CCWGG 5 cut(s) 228, 549, 635, 750, 951
EcoT38I GRGCYC 3 cut(s) 301, 660, 902
EgeI GGCGCC 1 cut(s) 352
EheI GGCGCC 1 cut(s) 352
FaqI GGGAC 2 cut(s) 299, 312
FauI CCCGC 2 cut(s) 668, 986
FauNDI CATATG 1 cut(s) 714
Fnu4HI GCNGC 2 cut(s) 66, 402
FokI GGATG 2 cut(s) 226, 754
FriOI GRGCYC 3 cut(s) 301, 660, 902
Fsp4HI GCNGC 2 cut(s) 66, 402
FspBI CTAG 2 cut(s) 234, 939
GlaI GCGC 3 cut(s) 174, 186, 352
GluI GCNGC 2 cut(s) 66, 402
GsaI CCCAGC 3 cut(s) 421, 630, 795
HaeII RGCGCY 1 cut(s) 354
HaeIII GGCC 5 cut(s) 11, 179, 536, 606, 977
HapII CCGG 6 cut(s) 29, 292, 323, 506, 603, 681
HhaI GCGC 3 cut(s) 175, 187, 353
Hin1I GRCGYC 1 cut(s) 351
Hin6I GCGC 3 cut(s) 173, 185, 351
HinP1I GCGC 3 cut(s) 173, 185, 351
HindIII AAGCTT 1 cut(s) 821
HpaII CCGG 6 cut(s) 29, 292, 323, 506, 603, 681
HphI GGTGA 3 cut(s) 211, 625, 941
Hpy166II GTNNAC 3 cut(s) 695, 784, 868
Hpy188I TCNGA 3 cut(s) 37, 347, 542
Hpy188III TCNNGA 3 cut(s) 95, 774, 883
Hpy8I GTNNAC 3 cut(s) 695, 784, 868
Hpy99I CGWCG 1 cut(s) 521
HpyAV CCTTC 2 cut(s) 79, 800
HpyCH4III ACNGT 1 cut(s) 893
HpyCH4IV ACGT 3 cut(s) 308, 516, 864
HpyCH4V TGCA 1 cut(s) 260
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 257, 359, 407, 446, 655
HpyF3I CTNAG 3 cut(s) 411, 593, 843
HpySE526I ACGT 3 cut(s) 308, 516, 864
Hsp92I GRCGYC 1 cut(s) 351
HspAI GCGC 3 cut(s) 173, 185, 351
KasI GGCGCC 1 cut(s) 350
KflI GGGWCCC 1 cut(s) 326
Kzo9I GATC 6 cut(s) 60, 91, 316, 421, 876, 885
LmnI GCTCC 5 cut(s) 31, 398, 442, 639, 854
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 2 cut(s) 247, 248
MaeI CTAG 2 cut(s) 234, 939
MaeII ACGT 3 cut(s) 308, 516, 864
MaeIII GTNAC 1 cut(s) 947
MalI GATC 6 cut(s) 62, 93, 318, 423, 878, 887
MbiI CCGCTC 2 cut(s) 56, 401
MboI GATC 6 cut(s) 60, 91, 316, 421, 876, 885
MboII GAAGA 6 cut(s) 117, 170, 394, 789, 871, 937
MflI RGATCY 2 cut(s) 421, 876
MhlI GDGCHC 4 cut(s) 301, 651, 660, 902
MluCI AATT 3 cut(s) 87, 476, 557
Mly113I GGCGCC 1 cut(s) 351
MmeI TCCRAC 2 cut(s) 21, 135
MseI TTAA 4 cut(s) 426, 464, 492, 991
MspCI CTTAAG 1 cut(s) 463
MspI CCGG 6 cut(s) 29, 292, 323, 506, 603, 681
MspR9I CCNGG 9 cut(s) 230, 292, 324, 551, 603, 637, 681, 752, 953
MvaI CCWGG 5 cut(s) 230, 551, 637, 752, 953
MvnI CGCG 2 cut(s) 173, 663
MwoI GCNNNNNNNGC 6 cut(s) 62, 257, 359, 407, 446, 655
NarI GGCGCC 1 cut(s) 351
NciI CCSGG 4 cut(s) 292, 324, 603, 681
NdeI CATATG 1 cut(s) 714
NdeII GATC 6 cut(s) 60, 91, 316, 421, 876, 885
NlaIV GGNNCC 7 cut(s) 12, 200, 327, 328, 352, 599, 621
NmuCI GTSAC 1 cut(s) 947
PcsI WCGNNNNNNNCGW 2 cut(s) 100, 660
Pfl23II CGTACG 1 cut(s) 309
PflMI CCANNNNNTGG 1 cut(s) 229
PkrI GCNGC 2 cut(s) 67, 403
PluTI GGCGCC 1 cut(s) 354
Ppu21I YACGTR 1 cut(s) 309
PpuMI RGGWCCY 2 cut(s) 326, 597
PshBI ATTAAT 1 cut(s) 492
Psp5II RGGWCCY 2 cut(s) 326, 597
Psp6I CCWGG 5 cut(s) 228, 549, 635, 750, 951
PspFI CCCAGC 3 cut(s) 417, 626, 791
PspGI CCWGG 5 cut(s) 228, 549, 635, 750, 951
PspLI CGTACG 1 cut(s) 309
PspN4I GGNNCC 7 cut(s) 12, 200, 327, 328, 352, 599, 621
PspPI GGNCC 6 cut(s) 10, 178, 326, 597, 754, 976
PspPPI RGGWCCY 2 cut(s) 326, 597
PsrI GAACNNNNNNTAC 2 cut(s) 676, 708
PsuI RGATCY 2 cut(s) 421, 876
RsaI GTAC 4 cut(s) 191, 311, 833, 869
RsaNI GTAC 4 cut(s) 190, 310, 832, 868
SaqAI TTAA 4 cut(s) 426, 464, 492, 991
SatI GCNGC 2 cut(s) 66, 402
Sau3AI GATC 6 cut(s) 60, 91, 316, 421, 876, 885
Sau96I GGNCC 6 cut(s) 10, 178, 326, 597, 754, 976
ScrFI CCNGG 9 cut(s) 230, 292, 324, 551, 603, 637, 681, 752, 953
SduI GDGCHC 4 cut(s) 301, 651, 660, 902
SfaNI GCATC 2 cut(s) 247, 248
SfcI CTRYAG 2 cut(s) 146, 858
SfoI GGCGCC 1 cut(s) 352
SinI GGWCC 3 cut(s) 326, 597, 754
SmlI CTYRAG 1 cut(s) 463
SmoI CTYRAG 1 cut(s) 463
Sse9I AATT 3 cut(s) 87, 476, 557
SsiI CCGC 7 cut(s) 56, 171, 401, 408, 440, 661, 979
SspDI GGCGCC 1 cut(s) 350
SspMI CTAG 2 cut(s) 234, 939
StyD4I CCNGG 9 cut(s) 228, 290, 322, 549, 601, 635, 679, 750, 951
TaaI ACNGT 1 cut(s) 893
TaiI ACGT 3 cut(s) 311, 519, 867
TaqI TCGA 4 cut(s) 358, 519, 609, 902
TasI AATT 3 cut(s) 87, 476, 557
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 404
Tru1I TTAA 4 cut(s) 426, 464, 492, 991
Tru9I TTAA 4 cut(s) 426, 464, 492, 991
TscAI CASTG 2 cut(s) 384, 833
TseFI GTSAC 1 cut(s) 947
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 947
TspDTI ATGAA 1 cut(s) 701
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 2 cut(s) 384, 833
Van91I CCANNNNNTGG 1 cut(s) 229
Vha464I CTTAAG 1 cut(s) 463
VpaK11BI GGWCC 3 cut(s) 326, 597, 754
VspI ATTAAT 1 cut(s) 492
XapI RAATTY 1 cut(s) 476
XspI CTAG 2 cut(s) 234, 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.