Rmu_sc0000423.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000423.1
OG0000633
Physical Location & Seq
Reverse (-)
56064 .. 56474
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000423.1_g000016.1.cds

Sequence Viewer

Length: 411 bp
atgcaggatttggaagatgaaaacacggcgctggcccgagcactagacaggaggcatcaacataacgaggcactcactcaggccctggctagagcatcccagctagcaggtataaacgctgccccgataacaggagacaccagcaccgcaccagcacctcctacggagggcagtcagaggttaatccaggtaccggtagacttattcccggaaagcttgaggcatctacctccaccaccgttaccacagccagttcacagtatcacgccgatacccgatgcaaacacggcattactcgtacaaatgagcaactccttgcatgccctgcaggcaagagtacaggccacagaaaatagagacacctggagagctatgaacagttacgaggaccgcccggggcccttcacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.84

Weight (kDa)

5.4

Isoelectric Point (pI)

52.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 98
Acc65I GGTACC 1 cut(s) 190
AccB1I GGYRCC 1 cut(s) 190
AccI GTMKAC 1 cut(s) 198
AciI CCGC 2 cut(s) 147, 391
AfaI GTAC 3 cut(s) 192, 300, 339
AfiI CCNNNNNNNGG 3 cut(s) 131, 167, 193
AgeI ACCGGT 1 cut(s) 193
AjnI CCWGG 3 cut(s) 84, 186, 362
AluBI AGCT 3 cut(s) 103, 216, 371
AluI AGCT 3 cut(s) 103, 216, 371
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 2 cut(s) 129, 351
AlwNI CAGNNNCTG 1 cut(s) 85
Ama87I CYCGRG 2 cut(s) 36, 394
AoxI GGCC 4 cut(s) 33, 81, 342, 398
ApaI GGGCCC 1 cut(s) 402
ApeKI GCWGC 1 cut(s) 119
AsiGI ACCGGT 1 cut(s) 193
Asp718I GGTACC 1 cut(s) 190
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 5 cut(s) 34, 82, 388, 398, 399
AsuC2I CCSGG 3 cut(s) 209, 395, 396
AsuHPI GGTGA 1 cut(s) 397
AsuNHI GCTAGC 1 cut(s) 103
AvaI CYCGRG 2 cut(s) 36, 394
AvaII GGWCC 1 cut(s) 388
BaeGI GKGCMC 1 cut(s) 402
BanI GGYRCC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 402
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 106
BceAI ACGGC 2 cut(s) 42, 303
BciT130I CCWGG 3 cut(s) 86, 188, 364
BcnI CCSGG 3 cut(s) 209, 395, 396
BcoDI GTCTC 2 cut(s) 129, 351
BfaI CTAG 3 cut(s) 44, 90, 104
BfmI CTRYAG 1 cut(s) 326
BfoI RGCGCY 1 cut(s) 32
BfuAI ACCTGC 1 cut(s) 98
BglI GCCNNNNNGGC 1 cut(s) 329
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 6 cut(s) 86, 188, 209, 364, 395, 396
Bme18I GGWCC 1 cut(s) 388
BmeT110I CYCGRG 2 cut(s) 36, 394
BmgT120I GGNCC 5 cut(s) 34, 82, 388, 398, 399
BmiI GGNNCC 3 cut(s) 192, 399, 400
BmrFI CCNGG 6 cut(s) 86, 188, 209, 364, 395, 396
BmsI GCATC 4 cut(s) 64, 104, 232, 268
BmtI GCTAGC 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 385
BpuEI CTTGAG 1 cut(s) 238
BpuMI CCSGG 3 cut(s) 209, 395, 396
BsaJI CCNNGG 3 cut(s) 84, 394, 395
BsaWI WCCGGW 1 cut(s) 193
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 167, 193
Bse118I RCCGGY 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 251
BseBI CCWGG 3 cut(s) 86, 188, 364
BseDI CCNNGG 3 cut(s) 84, 394, 395
BseGI GGATG 1 cut(s) 95
BseLI CCNNNNNNNGG 3 cut(s) 131, 167, 193
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 251
BseSI GKGCMC 1 cut(s) 402
BseXI GCAGC 1 cut(s) 106
BseYI CCCAGC 1 cut(s) 99
BshFI GGCC 4 cut(s) 35, 83, 344, 400
BshNI GGYRCC 1 cut(s) 190
BshTI ACCGGT 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 43
BsiHKCI CYCGRG 2 cut(s) 36, 394
BsiSI CCGG 3 cut(s) 194, 209, 395
BslI CCNNNNNNNGG 3 cut(s) 131, 167, 193
BsmAI GTCTC 2 cut(s) 129, 351
BsnI GGCC 4 cut(s) 35, 83, 344, 400
BsoBI CYCGRG 2 cut(s) 36, 394
Bsp120I GGGCCC 1 cut(s) 398
Bsp1286I GDGCHC 2 cut(s) 43, 402
BspACI CCGC 2 cut(s) 147, 391
BspANI GGCC 4 cut(s) 35, 83, 344, 400
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 3 cut(s) 192, 399, 400
BspMAI CTGCAG 1 cut(s) 330
BspMI ACCTGC 1 cut(s) 98
BspOI GCTAGC 1 cut(s) 107
BspT107I GGYRCC 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 193
BsrI ACTGG 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 193
BssECI CCNNGG 3 cut(s) 84, 394, 395
Bst2UI CCWGG 3 cut(s) 86, 188, 364
Bst4CI ACNGT 3 cut(s) 240, 260, 380
BstAPI GCANNNNNTGC 1 cut(s) 325
BstC8I GCNNGC 4 cut(s) 33, 105, 321, 330
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstMAI GTCTC 2 cut(s) 129, 351
BstMWI GCNNNNNNNGC 3 cut(s) 287, 325, 329
BstNI CCWGG 3 cut(s) 86, 188, 364
BstNSI RCATGY 1 cut(s) 323
BstSCI CCNGG 6 cut(s) 84, 186, 207, 362, 393, 394
BstSFI CTRYAG 1 cut(s) 326
BstSLI GKGCMC 1 cut(s) 402
BstV1I GCAGC 1 cut(s) 106
BsuRI GGCC 4 cut(s) 35, 83, 344, 400
BtsCI GGATG 1 cut(s) 95
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 4 cut(s) 33, 105, 321, 330
CaiI CAGNNNCTG 1 cut(s) 85
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 193
Cfr13I GGNCC 5 cut(s) 34, 82, 388, 398, 399
Cfr9I CCCGGG 1 cut(s) 394
Csp6I GTAC 3 cut(s) 191, 299, 338
CspAI ACCGGT 1 cut(s) 193
CviAII CATG 1 cut(s) 320
CviJI RGCY 9 cut(s) 35, 83, 89, 103, 216, 250, 344, 371, 400
CviKI_1 RGCY 9 cut(s) 35, 83, 89, 103, 216, 250, 344, 371, 400
CviQI GTAC 3 cut(s) 191, 299, 338
DdeI CTNAG 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 402
Eco47I GGWCC 1 cut(s) 388
Eco88I CYCGRG 2 cut(s) 36, 394
EcoO109I RGGNCCY 3 cut(s) 82, 398, 399
EcoRII CCWGG 3 cut(s) 84, 186, 362
EcoT38I GRGCYC 1 cut(s) 402
FaeI CATG 1 cut(s) 323
FaiI YATR 4 cut(s) 63, 113, 321, 374
FatI CATG 1 cut(s) 319
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 1 cut(s) 82
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 3 cut(s) 44, 90, 104
GlaI GCGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 120
GsaI CCCAGC 1 cut(s) 103
GsuI CTGGAG 1 cut(s) 385
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 4 cut(s) 35, 83, 344, 400
HapII CCGG 3 cut(s) 194, 209, 395
HhaI GCGC 1 cut(s) 31
Hin1II CATG 1 cut(s) 323
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 214
HpaII CCGG 3 cut(s) 194, 209, 395
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 2 cut(s) 199, 256
Hpy188I TCNGA 1 cut(s) 177
Hpy8I GTNNAC 2 cut(s) 199, 256
HpyCH4III ACNGT 3 cut(s) 240, 260, 380
HpyCH4V TGCA 4 cut(s) 4, 281, 319, 328
HpyF10VI GCNNNNNNNGC 3 cut(s) 287, 325, 329
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 1 cut(s) 323
HspAI GCGC 1 cut(s) 29
KpnI GGTACC 1 cut(s) 194
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 4 cut(s) 64, 104, 232, 268
MaeI CTAG 3 cut(s) 44, 90, 104
MaeIII GTNAC 2 cut(s) 240, 380
MboII GAAGA 1 cut(s) 26
MhlI GDGCHC 2 cut(s) 43, 402
MnlI CCTC 8 cut(s) 45, 61, 160, 168, 171, 213, 240, 379
MseI TTAA 1 cut(s) 182
MspI CCGG 3 cut(s) 194, 209, 395
MspR9I CCNGG 6 cut(s) 86, 188, 209, 364, 395, 396
MvaI CCWGG 3 cut(s) 86, 188, 364
MwoI GCNNNNNNNGC 3 cut(s) 287, 325, 329
NciI CCSGG 3 cut(s) 209, 395, 396
NheI GCTAGC 1 cut(s) 103
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 3 cut(s) 192, 399, 400
NspI RCATGY 1 cut(s) 323
PaeI GCATGC 1 cut(s) 323
PfoI TCCNGGA 1 cut(s) 207
PinAI ACCGGT 1 cut(s) 193
PkrI GCNGC 1 cut(s) 121
Psp6I CCWGG 3 cut(s) 84, 186, 362
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 3 cut(s) 84, 186, 362
PspN4I GGNNCC 3 cut(s) 192, 399, 400
PspOMI GGGCCC 1 cut(s) 398
PspPI GGNCC 5 cut(s) 34, 82, 388, 398, 399
PstI CTGCAG 1 cut(s) 330
PstNI CAGNNNCTG 1 cut(s) 85
RsaI GTAC 3 cut(s) 192, 300, 339
RsaNI GTAC 3 cut(s) 191, 299, 338
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 1 cut(s) 120
Sau96I GGNCC 5 cut(s) 34, 82, 388, 398, 399
SbfI CCTGCAGG 1 cut(s) 330
ScrFI CCNGG 6 cut(s) 86, 188, 209, 364, 395, 396
SdaI CCTGCAGG 1 cut(s) 330
SduI GDGCHC 2 cut(s) 43, 402
SfaNI GCATC 4 cut(s) 64, 104, 232, 268
SfcI CTRYAG 1 cut(s) 326
SinI GGWCC 1 cut(s) 388
SmaI CCCGGG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
SphI GCATGC 1 cut(s) 323
Sse8387I CCTGCAGG 1 cut(s) 330
SsiI CCGC 2 cut(s) 147, 391
SspMI CTAG 3 cut(s) 44, 90, 104
StyD4I CCNGG 6 cut(s) 84, 186, 207, 362, 393, 394
TaaI ACNGT 3 cut(s) 240, 260, 380
TatI WGTACW 1 cut(s) 337
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 2 cut(s) 33, 389
TspGWI ACGGA 1 cut(s) 179
TspMI CCCGGG 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 388
XceI RCATGY 1 cut(s) 323
XmaI CCCGGG 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 3 cut(s) 44, 90, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.