Rmu_sc0007321.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007321.1
OG0000633
Physical Location & Seq
Reverse (-)
80 .. 981
902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007321.1_g000001.1.cds

Sequence Viewer

Length: 633 bp
atgtcggaacgcaggactccagttaccagagaaactgaaggtactacgccatgggccgggttcacacctcaccatggcgggcttcacataaggtgccaccccgagcacccagggcccggggcaaggccagcacagcccatctattctacaaatactagactgatagcatcagaagaacctgtgtcccacatcgaggatagggaagacttcatccccacacttgagtataaagatcatggcacaaccacctttgaagggtacccggagaaagccaccagaaacattggcgcgccagatggggtaccggatatgaatgagccggaagtgacaggagagagaagtgtcgcccgggcactcgtattctccccgggaacttcatcagcaaaggcgccagctgttcgggaggaaatgcatggtctcggatccttggacccaatagtcccagatcaggtgactccggtatcggagttagagtctatgcgagctgagattgcagccttcaaagagcagtccaggatcgatcgggaacaacgaagtaccgatagggaaacaaaccgcctcacgcaacagagaatgcaggatttggaagatgaaaatacggcgctggcccgggcactagacaggaggtactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.45

Weight (kDa)

5.23

Isoelectric Point (pI)

56.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 437
Acc65I GGTACC 2 cut(s) 258, 301
AccB1I GGYRCC 4 cut(s) 93, 258, 301, 388
AccII CGCG 1 cut(s) 290
AciI CCGC 2 cut(s) 78, 556
AclWI GGATC 3 cut(s) 417, 430, 524
AcuI CTGAAG 1 cut(s) 57
AcyI GRCGYC 1 cut(s) 389
AfaI GTAC 5 cut(s) 43, 260, 303, 538, 629
AfiI CCNNNNNNNGG 7 cut(s) 56, 74, 116, 123, 193, 255, 448
AgsI TTSAA 2 cut(s) 254, 502
AjnI CCWGG 2 cut(s) 109, 512
AluBI AGCT 2 cut(s) 395, 485
AluI AGCT 2 cut(s) 395, 485
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 3 cut(s) 417, 430, 524
Ama87I CYCGRG 5 cut(s) 101, 116, 348, 367, 609
AoxI GGCC 4 cut(s) 54, 113, 125, 606
ApaI GGGCCC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 494
AscI GGCGCGCC 1 cut(s) 288
Asp718I GGTACC 2 cut(s) 258, 301
AspLEI GCGC 4 cut(s) 290, 292, 391, 604
AspS9I GGNCC 5 cut(s) 54, 113, 114, 430, 607
AsuHPI GGTGA 2 cut(s) 62, 463
AvaI CYCGRG 5 cut(s) 101, 116, 348, 367, 609
AvaII GGWCC 1 cut(s) 430
BaeGI GKGCMC 3 cut(s) 117, 355, 616
BaeI ACNNNNGTAYC 2 cut(s) 444, 477
BamHI GGATCC 1 cut(s) 422
BanI GGYRCC 4 cut(s) 93, 258, 301, 388
BanII GRGCYC 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 506
BccI CCATC 2 cut(s) 146, 290
BceAI ACGGC 1 cut(s) 615
BciT130I CCWGG 2 cut(s) 111, 514
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 3 cut(s) 156, 617, 631
BfoI RGCGCY 2 cut(s) 392, 605
BisI GCNGC 1 cut(s) 495
BlsI GCNGC 1 cut(s) 496
Bme18I GGWCC 1 cut(s) 430
BmeT110I CYCGRG 5 cut(s) 101, 116, 348, 367, 609
BmgT120I GGNCC 5 cut(s) 54, 113, 114, 430, 607
BmiI GGNNCC 7 cut(s) 95, 115, 260, 303, 390, 424, 432
BmsI GCATC 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 242
Bsa29I ATCGAT 1 cut(s) 519
BsaHI GRCGYC 1 cut(s) 389
BsaI GGTCTC 1 cut(s) 422
BsaWI WCCGGW 2 cut(s) 304, 457
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 7 cut(s) 56, 74, 116, 123, 193, 255, 448
Bse1I ACTGG 1 cut(s) 20
BseBI CCWGG 2 cut(s) 111, 514
BseCI ATCGAT 1 cut(s) 519
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 7 cut(s) 56, 74, 116, 123, 193, 255, 448
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 1 cut(s) 20
BsePI GCGCGC 1 cut(s) 288
BseSI GKGCMC 3 cut(s) 117, 355, 616
BseXI GCAGC 1 cut(s) 506
Bsh1236I CGCG 1 cut(s) 290
Bsh1285I CGRYCG 1 cut(s) 523
BshFI GGCC 4 cut(s) 56, 115, 127, 608
BshNI GGYRCC 4 cut(s) 93, 258, 301, 388
BshVI ATCGAT 1 cut(s) 519
BsiEI CGRYCG 1 cut(s) 523
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 5 cut(s) 101, 116, 348, 367, 609
BsiSI CCGG 9 cut(s) 57, 117, 263, 305, 320, 349, 368, 458, 610
BslFI GGGAC 2 cut(s) 169, 425
BslI CCNNNNNNNGG 7 cut(s) 56, 74, 116, 123, 193, 255, 448
BsmAI GTCTC 1 cut(s) 422
BsmFI GGGAC 2 cut(s) 169, 425
BsmI GAATGC 1 cut(s) 579
BsnI GGCC 4 cut(s) 56, 115, 127, 608
Bso31I GGTCTC 1 cut(s) 422
BsoBI CYCGRG 5 cut(s) 101, 116, 348, 367, 609
Bsp120I GGGCCC 1 cut(s) 113
Bsp1286I GDGCHC 4 cut(s) 108, 117, 355, 616
Bsp143I GATC 5 cut(s) 232, 422, 445, 516, 520
Bsp19I CCATGG 2 cut(s) 50, 73
BspACI CCGC 2 cut(s) 78, 556
BspANI GGCC 4 cut(s) 56, 115, 127, 608
BspCNI CTCAG 1 cut(s) 478
BspDI ATCGAT 1 cut(s) 519
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 7 cut(s) 95, 115, 260, 303, 390, 424, 432
BspPI GGATC 3 cut(s) 417, 430, 524
BspT107I GGYRCC 4 cut(s) 93, 258, 301, 388
BspTNI GGTCTC 1 cut(s) 422
BsrI ACTGG 1 cut(s) 20
BssHII GCGCGC 1 cut(s) 288
BssMI GATC 5 cut(s) 232, 422, 445, 516, 520
BssNI GRCGYC 1 cut(s) 389
BssT1I CCWWGG 3 cut(s) 50, 73, 426
Bst2UI CCWGG 2 cut(s) 111, 514
BstACI GRCGYC 1 cut(s) 389
BstC8I GCNNGC 6 cut(s) 80, 129, 290, 393, 483, 606
BstDEI CTNAG 1 cut(s) 486
BstDSI CCRYGG 2 cut(s) 50, 73
BstF5I GGATG 1 cut(s) 210
BstFNI CGCG 1 cut(s) 290
BstH2I RGCGCY 2 cut(s) 392, 605
BstHHI GCGC 4 cut(s) 290, 292, 391, 604
BstKTI GATC 5 cut(s) 235, 425, 448, 519, 523
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 5 cut(s) 232, 422, 445, 516, 520
BstMCI CGRYCG 1 cut(s) 523
BstMWI GCNNNNNNNGC 4 cut(s) 112, 128, 133, 491
BstNI CCWGG 2 cut(s) 111, 514
BstSLI GKGCMC 3 cut(s) 117, 355, 616
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 506
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 422
BstYI RGATCY 1 cut(s) 422
Bsu15I ATCGAT 1 cut(s) 519
BsuRI GGCC 4 cut(s) 56, 115, 127, 608
BsuTUI ATCGAT 1 cut(s) 519
BtgI CCRYGG 2 cut(s) 50, 73
BtsCI GGATG 1 cut(s) 210
Cac8I GCNNGC 6 cut(s) 80, 129, 290, 393, 483, 606
CfoI GCGC 4 cut(s) 290, 292, 391, 604
Cfr13I GGNCC 5 cut(s) 54, 113, 114, 430, 607
Cfr9I CCCGGG 4 cut(s) 116, 348, 367, 609
ClaI ATCGAT 1 cut(s) 519
Csp6I GTAC 5 cut(s) 42, 259, 302, 537, 628
CviAII CATG 4 cut(s) 51, 74, 236, 413
CviQI GTAC 5 cut(s) 42, 259, 302, 537, 628
DdeI CTNAG 1 cut(s) 486
DinI GGCGCC 1 cut(s) 390
DpnI GATC 5 cut(s) 234, 424, 447, 518, 522
DpnII GATC 5 cut(s) 232, 422, 445, 516, 520
DrdI GACNNNNNNGTC 1 cut(s) 437
DseDI GACNNNNNNGTC 1 cut(s) 437
Eco130I CCWWGG 3 cut(s) 50, 73, 426
Eco24I GRGCYC 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 422
Eco47I GGWCC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 57
Eco88I CYCGRG 5 cut(s) 101, 116, 348, 367, 609
EcoO109I RGGNCCY 1 cut(s) 113
EcoRII CCWGG 2 cut(s) 109, 512
EcoT14I CCWWGG 3 cut(s) 50, 73, 426
EcoT22I ATGCAT 1 cut(s) 414
EcoT38I GRGCYC 1 cut(s) 117
EgeI GGCGCC 1 cut(s) 390
EheI GGCGCC 1 cut(s) 390
ErhI CCWWGG 3 cut(s) 50, 73, 426
FaeI CATG 4 cut(s) 54, 77, 239, 416
FaiI YATR 8 cut(s) 52, 75, 89, 228, 237, 311, 414, 479
FaqI GGGAC 2 cut(s) 169, 425
FatI CATG 4 cut(s) 50, 73, 235, 412
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 495
FokI GGATG 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 495
FspBI CTAG 3 cut(s) 156, 617, 631
GlaI GCGC 4 cut(s) 289, 291, 390, 603
GluI GCNGC 1 cut(s) 495
HaeII RGCGCY 2 cut(s) 392, 605
HaeIII GGCC 4 cut(s) 56, 115, 127, 608
HapII CCGG 9 cut(s) 57, 117, 263, 305, 320, 349, 368, 458, 610
HhaI GCGC 4 cut(s) 290, 292, 391, 604
Hin1I GRCGYC 1 cut(s) 389
Hin1II CATG 4 cut(s) 54, 77, 239, 416
Hin6I GCGC 4 cut(s) 288, 290, 389, 602
HinP1I GCGC 4 cut(s) 288, 290, 389, 602
HinfI GANTC 3 cut(s) 16, 454, 473
HpaII CCGG 9 cut(s) 57, 117, 263, 305, 320, 349, 368, 458, 610
HphI GGTGA 2 cut(s) 62, 463
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 4 cut(s) 7, 172, 422, 466
Hpy188III TCNNGA 2 cut(s) 401, 524
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 3 cut(s) 32, 248, 508
HpyCH4V TGCA 3 cut(s) 412, 494, 577
HpyF10VI GCNNNNNNNGC 4 cut(s) 112, 128, 133, 491
HpyF3I CTNAG 1 cut(s) 486
Hsp92I GRCGYC 1 cut(s) 389
Hsp92II CATG 4 cut(s) 54, 77, 239, 416
HspAI GCGC 4 cut(s) 288, 290, 389, 602
KasI GGCGCC 1 cut(s) 388
KpnI GGTACC 2 cut(s) 262, 305
Kzo9I GATC 5 cut(s) 232, 422, 445, 516, 520
Lsp1109I GCAGC 1 cut(s) 506
LweI GCATC 1 cut(s) 176
MaeI CTAG 3 cut(s) 156, 617, 631
MaeIII GTNAC 3 cut(s) 22, 325, 451
MalI GATC 5 cut(s) 234, 424, 447, 518, 522
MboI GATC 5 cut(s) 232, 422, 445, 516, 520
MboII GAAGA 3 cut(s) 185, 215, 599
MflI RGATCY 1 cut(s) 422
MhlI GDGCHC 4 cut(s) 108, 117, 355, 616
Mly113I GGCGCC 1 cut(s) 389
MlyI GAGTC 3 cut(s) 10, 448, 482
MnlI CCTC 5 cut(s) 78, 187, 397, 569, 618
Mph1103I ATGCAT 1 cut(s) 414
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 9 cut(s) 57, 117, 263, 305, 320, 349, 368, 458, 610
Mva1269I GAATGC 1 cut(s) 579
MvaI CCWGG 2 cut(s) 111, 514
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 4 cut(s) 112, 128, 133, 491
NarI GGCGCC 1 cut(s) 389
NcoI CCATGG 2 cut(s) 50, 73
NdeII GATC 5 cut(s) 232, 422, 445, 516, 520
NlaIII CATG 4 cut(s) 54, 77, 239, 416
NlaIV GGNNCC 7 cut(s) 95, 115, 260, 303, 390, 424, 432
NmuCI GTSAC 2 cut(s) 325, 451
NsiI ATGCAT 1 cut(s) 414
PalAI GGCGCGCC 1 cut(s) 288
PasI CCCWGGG 1 cut(s) 110
PauI GCGCGC 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 529
PctI GAATGC 1 cut(s) 579
PfoI TCCNGGA 1 cut(s) 512
PkrI GCNGC 1 cut(s) 496
Ple19I CGATCG 1 cut(s) 523
PleI GAGTC 3 cut(s) 10, 448, 481
PluTI GGCGCC 1 cut(s) 392
PpsI GAGTC 3 cut(s) 10, 448, 481
Psp6I CCWGG 2 cut(s) 109, 512
PspGI CCWGG 2 cut(s) 109, 512
PspN4I GGNNCC 7 cut(s) 95, 115, 260, 303, 390, 424, 432
PspOMI GGGCCC 1 cut(s) 113
PspPI GGNCC 5 cut(s) 54, 113, 114, 430, 607
PsuI RGATCY 1 cut(s) 422
PteI GCGCGC 1 cut(s) 288
PvuI CGATCG 1 cut(s) 523
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 5 cut(s) 43, 260, 303, 538, 629
RsaNI GTAC 5 cut(s) 42, 259, 302, 537, 628
SatI GCNGC 1 cut(s) 495
Sau3AI GATC 5 cut(s) 232, 422, 445, 516, 520
Sau96I GGNCC 5 cut(s) 54, 113, 114, 430, 607
SchI GAGTC 3 cut(s) 10, 448, 482
SduI GDGCHC 4 cut(s) 108, 117, 355, 616
SetI ASST 9 cut(s) 43, 70, 95, 181, 251, 397, 453, 487, 629
SfaNI GCATC 1 cut(s) 176
SfoI GGCGCC 1 cut(s) 390
SgsI GGCGCGCC 1 cut(s) 288
SinI GGWCC 1 cut(s) 430
SmaI CCCGGG 4 cut(s) 118, 350, 369, 611
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
SrfI GCCCGGGC 2 cut(s) 350, 611
SsiI CCGC 2 cut(s) 78, 556
SspDI GGCGCC 1 cut(s) 388
SspMI CTAG 3 cut(s) 156, 617, 631
StyI CCWWGG 3 cut(s) 50, 73, 426
TaqI TCGA 2 cut(s) 192, 519
TseFI GTSAC 2 cut(s) 325, 451
TseI GCWGC 1 cut(s) 494
Tsp45I GTSAC 2 cut(s) 325, 451
TspDTI ATGAA 4 cut(s) 199, 326, 366, 606
TspMI CCCGGG 4 cut(s) 116, 348, 367, 609
VpaK11BI GGWCC 1 cut(s) 430
XmaI CCCGGG 4 cut(s) 116, 348, 367, 609
XspI CTAG 3 cut(s) 156, 617, 631
Zsp2I ATGCAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.