Rmu_sc0010048.1_g000010

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010048.1
OG0000633
Physical Location & Seq
Reverse (-)
50939 .. 51997
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010048.1_g000010.1.cds

Sequence Viewer

Length: 792 bp
atggcgggtctcacatgggacgccaccctgggcacccagggccctgggcaaggccagcacagcccatctatttacaccacaagagggctgatatggcctcagaagaacctgtgtcccacatcgaggataggggagactcccttcttgatacaggatttaggagccgatcggtgccccagacggggggtaccggacatgaatgagccagaagtgacaggagaggggagaagtgtcgcccgggcactgatattctctccgggaacttcgtcagcagaggcgccagttgttcaaggggaaatccatggtctcggatccttggacccgataatcccggatcaggtgactccaagcatcccagctagcaggcatgaacgctgccccgataacaggagacaccagaaccgcaccggcacctcctacggagggcagtcagaggttaatccaggtactggtagacttattcccggaaagcttgaggcatctaccaccaccaccgttaccatagccaacagtatcacaccggtacccgacgcaaacacggcattactcgtacaaatgagcaactccttacatgccctgcaggcaagggtacaggccacagaaaatagagacacctggagagctatgaacagttacgaggaccgcccggggcctttcactcaacaggttaggggagccattcgagcgaatacatcgaagccactgaagattgactatacgggagttggagacccctacgagcatttacaggctttccgatcgcaaacaaacgccaagggatatacggactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

263

Amino Acids

28.35

Weight (kDa)

7.02

Isoelectric Point (pI)

31.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 187, 523
AccB1I GGYRCC 6 cut(s) 32, 171, 187, 277, 410, 523
AccB7I CCANNNNNTGG 1 cut(s) 449
AccI GTMKAC 1 cut(s) 454
AciI CCGC 3 cut(s) 5, 403, 643
AclWI GGATC 3 cut(s) 306, 319, 342
AcuI CTGAAG 1 cut(s) 725
AcyI GRCGYC 2 cut(s) 21, 278
AfaI GTAC 5 cut(s) 189, 448, 525, 552, 591
AgeI ACCGGT 1 cut(s) 520
AgsI TTSAA 1 cut(s) 290
AjnI CCWGG 5 cut(s) 27, 36, 43, 442, 614
AluBI AGCT 3 cut(s) 359, 472, 623
AluI AGCT 3 cut(s) 359, 472, 623
Alw26I GTCTC 6 cut(s) 14, 128, 311, 385, 603, 723
AlwI GGATC 3 cut(s) 306, 319, 342
AlwNI CAGNNNCTG 1 cut(s) 449
Ama87I CYCGRG 2 cut(s) 237, 646
AoxI GGCC 5 cut(s) 40, 52, 95, 594, 650
ApaI GGGCCC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 375
AsiGI ACCGGT 1 cut(s) 520
Asp718I GGTACC 2 cut(s) 187, 523
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 5 cut(s) 40, 41, 319, 640, 650
AsuC2I CCSGG 7 cut(s) 238, 239, 258, 332, 465, 647, 648
AsuHPI GGTGA 1 cut(s) 352
AsuNHI GCTAGC 1 cut(s) 359
AvaI CYCGRG 2 cut(s) 237, 646
AvaII GGWCC 2 cut(s) 319, 640
BaeGI GKGCMC 4 cut(s) 35, 44, 176, 244
BaeI ACNNNNGTAYC 2 cut(s) 507, 540
BamHI GGATCC 1 cut(s) 311
BanI GGYRCC 6 cut(s) 32, 171, 187, 277, 410, 523
BanII GRGCYC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 362
BccI CCATC 1 cut(s) 73
BceAI ACGGC 1 cut(s) 555
BciT130I CCWGG 5 cut(s) 29, 38, 45, 444, 616
BcnI CCSGG 7 cut(s) 238, 239, 258, 332, 465, 647, 648
BcoDI GTCTC 6 cut(s) 14, 128, 311, 385, 603, 723
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 1 cut(s) 578
BfoI RGCGCY 1 cut(s) 281
BglI GCCNNNNNGGC 1 cut(s) 581
BisI GCNGC 1 cut(s) 376
BlsI GCNGC 1 cut(s) 377
Bme18I GGWCC 2 cut(s) 319, 640
BmeT110I CYCGRG 2 cut(s) 237, 646
BmgT120I GGNCC 5 cut(s) 40, 41, 319, 640, 650
BmsI GCATC 2 cut(s) 360, 488
BmtI GCTAGC 1 cut(s) 363
BpmI CTGGAG 1 cut(s) 637
BpuEI CTTGAG 1 cut(s) 494
BpuMI CCSGG 7 cut(s) 238, 239, 258, 332, 465, 647, 648
BsaHI GRCGYC 2 cut(s) 21, 278
BsaI GGTCTC 3 cut(s) 14, 311, 723
BsaWI WCCGGW 2 cut(s) 190, 520
Bse118I RCCGGY 2 cut(s) 407, 520
Bse1I ACTGG 2 cut(s) 281, 454
BseBI CCWGG 5 cut(s) 29, 38, 45, 444, 616
BseGI GGATG 1 cut(s) 351
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 2 cut(s) 281, 454
BseSI GKGCMC 4 cut(s) 35, 44, 176, 244
BseXI GCAGC 1 cut(s) 362
BseYI CCCAGC 1 cut(s) 355
Bsh1285I CGRYCG 2 cut(s) 169, 761
BshFI GGCC 5 cut(s) 42, 54, 97, 596, 652
BshNI GGYRCC 6 cut(s) 32, 171, 187, 277, 410, 523
BshTI ACCGGT 1 cut(s) 520
BsiEI CGRYCG 2 cut(s) 169, 761
BsiHKCI CYCGRG 2 cut(s) 237, 646
BsiSI CCGG 8 cut(s) 191, 238, 257, 332, 408, 465, 521, 647
BslFI GGGAC 2 cut(s) 32, 99
BsmAI GTCTC 6 cut(s) 14, 128, 311, 385, 603, 723
BsmFI GGGAC 2 cut(s) 32, 99
BsnI GGCC 5 cut(s) 42, 54, 97, 596, 652
Bso31I GGTCTC 3 cut(s) 14, 311, 723
BsoBI CYCGRG 2 cut(s) 237, 646
Bsp120I GGGCCC 1 cut(s) 40
Bsp1286I GDGCHC 4 cut(s) 35, 44, 176, 244
Bsp143I GATC 4 cut(s) 166, 311, 334, 758
Bsp19I CCATGG 1 cut(s) 301
BspACI CCGC 3 cut(s) 5, 403, 643
BspANI GGCC 5 cut(s) 42, 54, 97, 596, 652
BspCNI CTCAG 1 cut(s) 112
BspMAI CTGCAG 1 cut(s) 582
BspOI GCTAGC 1 cut(s) 363
BspPI GGATC 3 cut(s) 306, 319, 342
BspT107I GGYRCC 6 cut(s) 32, 171, 187, 277, 410, 523
BspTNI GGTCTC 3 cut(s) 14, 311, 723
BsrFI RCCGGY 2 cut(s) 407, 520
BsrI ACTGG 2 cut(s) 281, 454
BssAI RCCGGY 2 cut(s) 407, 520
BssMI GATC 4 cut(s) 166, 311, 334, 758
BssNI GRCGYC 2 cut(s) 21, 278
BssT1I CCWWGG 3 cut(s) 301, 315, 774
Bst2UI CCWGG 5 cut(s) 29, 38, 45, 444, 616
Bst4CI ACNGT 3 cut(s) 496, 512, 632
BstACI GRCGYC 2 cut(s) 21, 278
BstC8I GCNNGC 4 cut(s) 56, 361, 365, 582
BstDEI CTNAG 1 cut(s) 99
BstDSI CCRYGG 1 cut(s) 301
BstENI CCTNNNNNAGG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 351
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 4 cut(s) 169, 314, 337, 761
BstMAI GTCTC 6 cut(s) 14, 128, 311, 385, 603, 723
BstMBI GATC 4 cut(s) 166, 311, 334, 758
BstMCI CGRYCG 2 cut(s) 169, 761
BstMWI GCNNNNNNNGC 7 cut(s) 39, 55, 60, 94, 539, 581, 683
BstNI CCWGG 5 cut(s) 29, 38, 45, 444, 616
BstNSI RCATGY 1 cut(s) 575
BstSFI CTRYAG 1 cut(s) 578
BstSLI GKGCMC 4 cut(s) 35, 44, 176, 244
BstV1I GCAGC 1 cut(s) 362
BstX2I RGATCY 1 cut(s) 311
BstXI CCANNNNNNTGG 1 cut(s) 44
BstYI RGATCY 1 cut(s) 311
BsuRI GGCC 5 cut(s) 42, 54, 97, 596, 652
BtgI CCRYGG 1 cut(s) 301
BtsCI GGATG 1 cut(s) 351
BtsIMutI CAGTG 2 cut(s) 242, 701
Cac8I GCNNGC 4 cut(s) 56, 361, 365, 582
CaiI CAGNNNCTG 1 cut(s) 449
CfoI GCGC 1 cut(s) 280
Cfr10I RCCGGY 2 cut(s) 407, 520
Cfr13I GGNCC 5 cut(s) 40, 41, 319, 640, 650
Cfr9I CCCGGG 2 cut(s) 237, 646
CseI GACGC 2 cut(s) 29, 539
Csp6I GTAC 5 cut(s) 188, 447, 524, 551, 590
CspAI ACCGGT 1 cut(s) 520
CviAII CATG 5 cut(s) 15, 196, 302, 368, 572
CviQI GTAC 5 cut(s) 188, 447, 524, 551, 590
DdeI CTNAG 1 cut(s) 99
DinI GGCGCC 1 cut(s) 279
DpnI GATC 4 cut(s) 168, 313, 336, 760
DpnII GATC 4 cut(s) 166, 311, 334, 758
Eco130I CCWWGG 3 cut(s) 301, 315, 774
Eco24I GRGCYC 1 cut(s) 44
Eco31I GGTCTC 3 cut(s) 14, 311, 723
Eco47I GGWCC 2 cut(s) 319, 640
Eco57I CTGAAG 1 cut(s) 725
Eco88I CYCGRG 2 cut(s) 237, 646
EcoNI CCTNNNNNAGG 1 cut(s) 48
EcoO109I RGGNCCY 3 cut(s) 40, 41, 650
EcoRII CCWGG 5 cut(s) 27, 36, 43, 442, 614
EcoT14I CCWWGG 3 cut(s) 301, 315, 774
EcoT38I GRGCYC 1 cut(s) 44
EgeI GGCGCC 1 cut(s) 279
EheI GGCGCC 1 cut(s) 279
ErhI CCWWGG 3 cut(s) 301, 315, 774
FaeI CATG 5 cut(s) 18, 199, 305, 371, 575
FaqI GGGAC 2 cut(s) 32, 99
FatI CATG 5 cut(s) 14, 195, 301, 367, 571
FblI GTMKAC 1 cut(s) 454
Fnu4HI GCNGC 1 cut(s) 376
FokI GGATG 1 cut(s) 338
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 376
FspBI CTAG 1 cut(s) 360
GlaI GCGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 376
GsaI CCCAGC 1 cut(s) 359
GsuI CTGGAG 1 cut(s) 637
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 5 cut(s) 42, 54, 97, 596, 652
HapII CCGG 8 cut(s) 191, 238, 257, 332, 408, 465, 521, 647
HgaI GACGC 2 cut(s) 29, 539
HhaI GCGC 1 cut(s) 280
Hin1I GRCGYC 2 cut(s) 21, 278
Hin1II CATG 5 cut(s) 18, 199, 305, 371, 575
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 2 cut(s) 136, 343
HpaII CCGG 8 cut(s) 191, 238, 257, 332, 408, 465, 521, 647
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 1 cut(s) 455
Hpy188I TCNGA 4 cut(s) 102, 311, 433, 758
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 1 cut(s) 455
Hpy99I CGWCG 1 cut(s) 533
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 3 cut(s) 496, 512, 632
HpyCH4V TGCA 1 cut(s) 580
HpyF10VI GCNNNNNNNGC 7 cut(s) 39, 55, 60, 94, 539, 581, 683
HpyF3I CTNAG 1 cut(s) 99
Hsp92I GRCGYC 2 cut(s) 21, 278
Hsp92II CATG 5 cut(s) 18, 199, 305, 371, 575
HspAI GCGC 1 cut(s) 278
KasI GGCGCC 1 cut(s) 277
KpnI GGTACC 2 cut(s) 191, 527
Kzo9I GATC 4 cut(s) 166, 311, 334, 758
LmnI GCTCC 2 cut(s) 161, 674
Lsp1109I GCAGC 1 cut(s) 362
LweI GCATC 2 cut(s) 360, 488
MaeI CTAG 1 cut(s) 360
MaeIII GTNAC 4 cut(s) 211, 340, 496, 632
MalI GATC 4 cut(s) 168, 313, 336, 760
MboI GATC 4 cut(s) 166, 311, 334, 758
MboII GAAGA 2 cut(s) 115, 718
MflI RGATCY 1 cut(s) 311
MhlI GDGCHC 4 cut(s) 35, 44, 176, 244
Mly113I GGCGCC 1 cut(s) 278
MlyI GAGTC 2 cut(s) 130, 337
MmeI TCCRAC 1 cut(s) 706
MseI TTAA 1 cut(s) 438
MspI CCGG 8 cut(s) 191, 238, 257, 332, 408, 465, 521, 647
MvaI CCWGG 5 cut(s) 29, 38, 45, 444, 616
MwoI GCNNNNNNNGC 7 cut(s) 39, 55, 60, 94, 539, 581, 683
NarI GGCGCC 1 cut(s) 278
NciI CCSGG 7 cut(s) 238, 239, 258, 332, 465, 647, 648
NcoI CCATGG 1 cut(s) 301
NdeII GATC 4 cut(s) 166, 311, 334, 758
NheI GCTAGC 1 cut(s) 359
NlaIII CATG 5 cut(s) 18, 199, 305, 371, 575
NmuCI GTSAC 2 cut(s) 211, 340
NspI RCATGY 1 cut(s) 575
PasI CCCWGGG 3 cut(s) 28, 37, 44
PflMI CCANNNNNTGG 1 cut(s) 449
PfoI TCCNGGA 3 cut(s) 256, 330, 463
PinAI ACCGGT 1 cut(s) 520
PkrI GCNGC 1 cut(s) 377
Ple19I CGATCG 2 cut(s) 169, 761
PleI GAGTC 2 cut(s) 130, 337
PluTI GGCGCC 1 cut(s) 281
PpsI GAGTC 2 cut(s) 130, 337
Psp6I CCWGG 5 cut(s) 27, 36, 43, 442, 614
PspFI CCCAGC 1 cut(s) 355
PspGI CCWGG 5 cut(s) 27, 36, 43, 442, 614
PspOMI GGGCCC 1 cut(s) 40
PspPI GGNCC 5 cut(s) 40, 41, 319, 640, 650
PstI CTGCAG 1 cut(s) 582
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 1 cut(s) 311
PvuI CGATCG 2 cut(s) 169, 761
RsaI GTAC 5 cut(s) 189, 448, 525, 552, 591
RsaNI GTAC 5 cut(s) 188, 447, 524, 551, 590
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 1 cut(s) 376
Sau3AI GATC 4 cut(s) 166, 311, 334, 758
Sau96I GGNCC 5 cut(s) 40, 41, 319, 640, 650
SbfI CCTGCAGG 1 cut(s) 582
SchI GAGTC 2 cut(s) 130, 337
SdaI CCTGCAGG 1 cut(s) 582
SduI GDGCHC 4 cut(s) 35, 44, 176, 244
SfaNI GCATC 2 cut(s) 360, 488
SfcI CTRYAG 1 cut(s) 578
SfoI GGCGCC 1 cut(s) 279
SinI GGWCC 2 cut(s) 319, 640
SmaI CCCGGG 2 cut(s) 239, 648
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
SrfI GCCCGGGC 1 cut(s) 239
Sse8387I CCTGCAGG 1 cut(s) 582
SsiI CCGC 3 cut(s) 5, 403, 643
SspDI GGCGCC 1 cut(s) 277
SspMI CTAG 1 cut(s) 360
StyI CCWWGG 3 cut(s) 301, 315, 774
TaaI ACNGT 3 cut(s) 496, 512, 632
TaqI TCGA 3 cut(s) 122, 682, 695
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 2 cut(s) 249, 708
TseFI GTSAC 2 cut(s) 211, 340
TseI GCWGC 1 cut(s) 375
Tsp45I GTSAC 2 cut(s) 211, 340
TspDTI ATGAA 3 cut(s) 212, 384, 641
TspGWI ACGGA 1 cut(s) 435
TspMI CCCGGG 2 cut(s) 237, 646
TspRI CASTG 2 cut(s) 249, 708
Van91I CCANNNNNTGG 1 cut(s) 449
VpaK11BI GGWCC 2 cut(s) 319, 640
XagI CCTNNNNNAGG 1 cut(s) 48
XceI RCATGY 1 cut(s) 575
XmaI CCCGGG 2 cut(s) 237, 646
XmiI GTMKAC 1 cut(s) 454
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.