Rroxscaffold_5G00378600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000633
Physical Location & Seq
Forward (+)
59046798 .. 59047380
583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378600.1

Sequence Viewer

Length: 465 bp
ATGGCTACGGCCATCGGACACGCCCGGCCGAATTCGAAATGTATGGGGACACCCCCGGACCGAGCTAAGGGTTTCCACCCGGTCGTCGGGGATGAGCCACAAAAGAGGGAGTGGGTCCATAGTCGGGACCGGTCACCCCATACCTTGAGCAAGAGAAGCAAAGAGTCCTCATCCGGGTCTAACGGTTACGGGACCACTCGGCCTCACTGGAGCAAAGGGCACAACAGCCCCGCCAACACCACCACCACCCCGTATGAGGTGTTCACTATCCTCAATGCTTCATACGAGACTATTTGGAATGAGAACAAGGATGAGATACCGGACCACCACCGAGGAAGTTCCCGAAGAGTAAACTTACCCGGCGAGGATACCGAAAGGAACTATATACGTGTACGGCCGGATCTTCACCATCCACGGTGGGGGCCCGAAAGAGTTACCTCCCCGGAGGAAGAAGCGAAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.52

Weight (kDa)

9.13

Isoelectric Point (pI)

58.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 231
AclWI GGATC 1 cut(s) 408
AcoI YGGCCR 3 cut(s) 9, 26, 395
AcsI RAATTY 2 cut(s) 31, 458
AfaI GTAC 1 cut(s) 393
AfiI CCNNNNNNNGG 6 cut(s) 67, 86, 124, 174, 256, 419
AflIII ACRYGT 1 cut(s) 388
AgeI ACCGGT 1 cut(s) 129
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 1 cut(s) 408
AoxI GGCC 5 cut(s) 9, 26, 200, 395, 422
ApaI GGGCCC 1 cut(s) 426
ApoI RAATTY 2 cut(s) 31, 458
AsiGI ACCGGT 1 cut(s) 129
AspS9I GGNCC 7 cut(s) 58, 115, 127, 192, 322, 422, 423
AsuC2I CCSGG 6 cut(s) 25, 56, 80, 175, 360, 443
AsuHPI GGTGA 2 cut(s) 126, 398
AsuII TTCGAA 1 cut(s) 35
AvaII GGWCC 5 cut(s) 58, 115, 127, 192, 322
BaeGI GKGCMC 2 cut(s) 222, 426
BanII GRGCYC 1 cut(s) 426
BccI CCATC 2 cut(s) 20, 417
BceAI ACGGC 2 cut(s) 24, 410
BciVI GTATCC 1 cut(s) 361
BcnI CCSGG 6 cut(s) 25, 56, 80, 175, 360, 443
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 1 cut(s) 463
BfuI GTATCC 1 cut(s) 361
Bme1390I CCNGG 6 cut(s) 25, 56, 80, 175, 360, 443
Bme18I GGWCC 5 cut(s) 58, 115, 127, 192, 322
BmgT120I GGNCC 7 cut(s) 58, 115, 127, 192, 322, 422, 423
BmiI GGNNCC 5 cut(s) 116, 128, 193, 423, 424
BmrFI CCNGG 6 cut(s) 25, 56, 80, 175, 360, 443
BpmI CTGGAG 1 cut(s) 229
Bpu10I CCTNAGC 1 cut(s) 66
Bpu14I TTCGAA 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 166
BpuMI CCSGG 6 cut(s) 25, 56, 80, 175, 360, 443
BsaAI YACGTR 1 cut(s) 389
BsaJI CCNNGG 4 cut(s) 54, 331, 413, 441
BsaWI WCCGGW 2 cut(s) 129, 319
Bsc4I CCNNNNNNNGG 6 cut(s) 67, 86, 124, 174, 256, 419
Bse118I RCCGGY 1 cut(s) 129
Bse1I ACTGG 1 cut(s) 212
BseDI CCNNGG 4 cut(s) 54, 331, 413, 441
BseGI GGATG 4 cut(s) 97, 170, 316, 409
BseLI CCNNNNNNNGG 6 cut(s) 67, 86, 124, 174, 256, 419
BseNI ACTGG 1 cut(s) 212
BseSI GKGCMC 2 cut(s) 222, 426
BseX3I CGGCCG 2 cut(s) 26, 395
Bsh1285I CGRYCG 3 cut(s) 29, 84, 398
BshFI GGCC 5 cut(s) 11, 28, 202, 397, 424
BshTI ACCGGT 1 cut(s) 129
BsiEI CGRYCG 3 cut(s) 29, 84, 398
BsiSI CCGG 9 cut(s) 25, 56, 80, 130, 174, 320, 360, 398, 443
BslFI GGGAC 3 cut(s) 61, 140, 205
BslI CCNNNNNNNGG 6 cut(s) 67, 86, 124, 174, 256, 419
BsmAI GTCTC 1 cut(s) 281
BsmFI GGGAC 3 cut(s) 61, 140, 205
BsnI GGCC 5 cut(s) 11, 28, 202, 397, 424
Bsp119I TTCGAA 1 cut(s) 35
Bsp120I GGGCCC 1 cut(s) 422
Bsp1286I GDGCHC 2 cut(s) 222, 426
Bsp143I GATC 1 cut(s) 400
BspACI CCGC 1 cut(s) 231
BspANI GGCC 5 cut(s) 11, 28, 202, 397, 424
BspLI GGNNCC 5 cut(s) 116, 128, 193, 423, 424
BspPI GGATC 1 cut(s) 408
BspT104I TTCGAA 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 129
BsrI ACTGG 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 129
BssECI CCNNGG 4 cut(s) 54, 331, 413, 441
BssMI GATC 1 cut(s) 400
Bst4CI ACNGT 2 cut(s) 185, 417
Bst6I CTCTTC 1 cut(s) 340
BstBAI YACGTR 1 cut(s) 389
BstBI TTCGAA 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 413
BstEII GGTNACC 1 cut(s) 132
BstF5I GGATG 4 cut(s) 97, 170, 316, 409
BstKTI GATC 1 cut(s) 403
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 1 cut(s) 400
BstMCI CGRYCG 3 cut(s) 29, 84, 398
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstPI GGTNACC 1 cut(s) 132
BstSCI CCNGG 6 cut(s) 23, 54, 78, 173, 358, 441
BstSLI GKGCMC 2 cut(s) 222, 426
BstX2I RGATCY 1 cut(s) 400
BstYI RGATCY 1 cut(s) 400
BstZI CGGCCG 2 cut(s) 26, 395
BsuI GTATCC 1 cut(s) 361
BsuRI GGCC 5 cut(s) 11, 28, 202, 397, 424
BtgI CCRYGG 1 cut(s) 413
BtsCI GGATG 4 cut(s) 97, 170, 316, 409
BtsIMutI CAGTG 1 cut(s) 205
Cfr10I RCCGGY 1 cut(s) 129
Cfr13I GGNCC 7 cut(s) 58, 115, 127, 192, 322, 422, 423
CpoI CGGWCCG 1 cut(s) 58
Csp6I GTAC 1 cut(s) 392
CspAI ACCGGT 1 cut(s) 129
CspI CGGWCCG 1 cut(s) 58
CviJI RGCY 9 cut(s) 5, 11, 28, 65, 97, 202, 228, 397, 424
CviKI_1 RGCY 9 cut(s) 5, 11, 28, 65, 97, 202, 228, 397, 424
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 1 cut(s) 66
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
EaeI YGGCCR 3 cut(s) 9, 26, 395
EagI CGGCCG 2 cut(s) 26, 395
Eam1104I CTCTTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 340
EclXI CGGCCG 2 cut(s) 26, 395
Eco24I GRGCYC 1 cut(s) 426
Eco47I GGWCC 5 cut(s) 58, 115, 127, 192, 322
Eco52I CGGCCG 2 cut(s) 26, 395
Eco91I GGTNACC 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 422
EcoO65I GGTNACC 1 cut(s) 132
EcoRI GAATTC 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 426
FaiI YATR 7 cut(s) 44, 120, 141, 255, 283, 384, 386
FaqI GGGAC 3 cut(s) 61, 140, 205
FauI CCCGC 1 cut(s) 238
FokI GGATG 4 cut(s) 104, 157, 323, 396
FriOI GRGCYC 1 cut(s) 426
FspBI CTAG 1 cut(s) 463
GsuI CTGGAG 1 cut(s) 229
HaeIII GGCC 5 cut(s) 11, 28, 202, 397, 424
HapII CCGG 9 cut(s) 25, 56, 80, 130, 174, 320, 360, 398, 443
HinfI GANTC 1 cut(s) 164
HpaII CCGG 9 cut(s) 25, 56, 80, 130, 174, 320, 360, 398, 443
HphI GGTGA 2 cut(s) 126, 398
Hpy166II GTNNAC 3 cut(s) 264, 352, 392
Hpy188I TCNGA 1 cut(s) 17
Hpy188III TCNNGA 2 cut(s) 125, 342
Hpy8I GTNNAC 3 cut(s) 264, 352, 392
Hpy99I CGWCG 1 cut(s) 89
HpyCH4III ACNGT 2 cut(s) 185, 417
HpyCH4IV ACGT 1 cut(s) 388
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 388
Kzo9I GATC 1 cut(s) 400
LmnI GCTCC 1 cut(s) 210
MaeI CTAG 1 cut(s) 463
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 3 cut(s) 132, 185, 433
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MboII GAAGA 3 cut(s) 357, 395, 461
MflI RGATCY 1 cut(s) 400
MhlI GDGCHC 2 cut(s) 222, 426
MluCI AATT 2 cut(s) 31, 458
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 9 cut(s) 99, 178, 213, 250, 281, 326, 358, 439, 448
MspI CCGG 9 cut(s) 25, 56, 80, 130, 174, 320, 360, 398, 443
MspR9I CCNGG 6 cut(s) 25, 56, 80, 175, 360, 443
MwoI GCNNNNNNNGC 1 cut(s) 156
NciI CCSGG 6 cut(s) 25, 56, 80, 175, 360, 443
NdeII GATC 1 cut(s) 400
NlaIV GGNNCC 5 cut(s) 116, 128, 193, 423, 424
NmeAIII GCCGAG 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 132
NspV TTCGAA 1 cut(s) 35
PinAI ACCGGT 1 cut(s) 129
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Ppu21I YACGTR 1 cut(s) 389
PspEI GGTNACC 1 cut(s) 132
PspN4I GGNNCC 5 cut(s) 116, 128, 193, 423, 424
PspOMI GGGCCC 1 cut(s) 422
PspPI GGNCC 7 cut(s) 58, 115, 127, 192, 322, 422, 423
PsrI GAACNNNNNNTAC 2 cut(s) 245, 277
PsuI RGATCY 1 cut(s) 400
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
Rsr2I CGGWCCG 1 cut(s) 58
RsrII CGGWCCG 1 cut(s) 58
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 7 cut(s) 58, 115, 127, 192, 322, 422, 423
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 6 cut(s) 25, 56, 80, 175, 360, 443
SduI GDGCHC 2 cut(s) 222, 426
SetI ASST 5 cut(s) 67, 146, 261, 391, 440
SfuI TTCGAA 1 cut(s) 35
SinI GGWCC 5 cut(s) 58, 115, 127, 192, 322
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 2 cut(s) 31, 458
SsiI CCGC 1 cut(s) 231
SspMI CTAG 1 cut(s) 463
StyD4I CCNGG 6 cut(s) 23, 54, 78, 173, 358, 441
TaaI ACNGT 2 cut(s) 185, 417
TaiI ACGT 1 cut(s) 391
TaqI TCGA 1 cut(s) 35
TaqII GACCGA 1 cut(s) 75
TasI AATT 2 cut(s) 31, 458
TscAI CASTG 1 cut(s) 212
TseFI GTSAC 1 cut(s) 132
Tsp45I GTSAC 1 cut(s) 132
TspDTI ATGAA 1 cut(s) 270
TspRI CASTG 1 cut(s) 212
VpaK11BI GGWCC 5 cut(s) 58, 115, 127, 192, 322
XapI RAATTY 2 cut(s) 31, 458
XspI CTAG 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.