Rmu_sc0007144.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007144.1
OG0000633
Physical Location & Seq
Forward (+)
18410 .. 18661
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007144.1_g000004.1.cds

Sequence Viewer

Length: 252 bp
atgcaggatttggaagatgaaaacacagcgctggcccgagcactagacaggaggcaccagtacaacgaggcactcacccaggccctggctaaagcatctcagctagcagcaggcgtgaacgctgccccgataacaggagaccccagcaccgccccagaaccttctacggagggcggtcaacggataatccagataccggtagacttattcccggaaaacttgaggcatttgccaccaccaccgctaccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.92

Weight (kDa)

4.71

Isoelectric Point (pI)

58.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 54
AccB7I CCANNNNNTGG 1 cut(s) 85
AccI GTMKAC 1 cut(s) 201
AciI CCGC 3 cut(s) 150, 174, 242
AfaI GTAC 1 cut(s) 62
AfeI AGCGCT 1 cut(s) 30
AfiI CCNNNNNNNGG 3 cut(s) 85, 134, 196
AgeI ACCGGT 1 cut(s) 196
AjnI CCWGG 2 cut(s) 78, 84
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 132
AlwNI CAGNNNCTG 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 36
Aor51HI AGCGCT 1 cut(s) 30
AoxI GGCC 2 cut(s) 33, 81
ApeKI GCWGC 2 cut(s) 107, 122
AsiGI ACCGGT 1 cut(s) 196
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 2 cut(s) 34, 82
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 67
AsuNHI GCTAGC 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 36
BanI GGYRCC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 109, 119
BciT130I CCWGG 2 cut(s) 80, 86
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 2 cut(s) 44, 104
BfoI RGCGCY 1 cut(s) 32
BisI GCNGC 2 cut(s) 108, 123
BlsI GCNGC 2 cut(s) 109, 124
Bme1390I CCNGG 3 cut(s) 80, 86, 212
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 2 cut(s) 34, 82
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 3 cut(s) 80, 86, 212
BmsI GCATC 1 cut(s) 104
BmtI GCTAGC 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 241
BpuMI CCSGG 1 cut(s) 212
BsaI GGTCTC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 78, 84
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 134, 196
Bse118I RCCGGY 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 58
BseBI CCWGG 2 cut(s) 80, 86
BseDI CCNNGG 2 cut(s) 78, 84
BseLI CCNNNNNNNGG 3 cut(s) 85, 134, 196
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 2 cut(s) 109, 119
BseYI CCCAGC 1 cut(s) 143
BshFI GGCC 2 cut(s) 35, 83
BshNI GGYRCC 1 cut(s) 54
BshTI ACCGGT 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 36
BsiSI CCGG 2 cut(s) 197, 212
BslI CCNNNNNNNGG 3 cut(s) 85, 134, 196
BsmAI GTCTC 1 cut(s) 132
BsnI GGCC 2 cut(s) 35, 83
Bso31I GGTCTC 1 cut(s) 132
BsoBI CYCGRG 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 43
BspACI CCGC 3 cut(s) 150, 174, 242
BspANI GGCC 2 cut(s) 35, 83
BspCNI CTCAG 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 56
BspOI GCTAGC 1 cut(s) 107
BspT107I GGYRCC 1 cut(s) 54
BspTNI GGTCTC 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 196
BsrI ACTGG 1 cut(s) 58
BssAI RCCGGY 1 cut(s) 196
BssECI CCNNGG 2 cut(s) 78, 84
Bst2UI CCWGG 2 cut(s) 80, 86
BstC8I GCNNGC 3 cut(s) 33, 105, 112
BstDEI CTNAG 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 132
BstNI CCWGG 2 cut(s) 80, 86
BstSCI CCNGG 3 cut(s) 78, 84, 210
BstV1I GCAGC 2 cut(s) 109, 119
BsuRI GGCC 2 cut(s) 35, 83
Cac8I GCNNGC 3 cut(s) 33, 105, 112
CaiI CAGNNNCTG 1 cut(s) 85
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 34, 82
Csp6I GTAC 1 cut(s) 61
CspAI ACCGGT 1 cut(s) 196
CviJI RGCY 4 cut(s) 35, 83, 89, 103
CviKI_1 RGCY 4 cut(s) 35, 83, 89, 103
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 132
Eco47III AGCGCT 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 36
EcoO109I RGGNCCY 1 cut(s) 82
EcoRII CCWGG 2 cut(s) 78, 84
FaiI YATR 1 cut(s) 250
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 108, 123
Fsp4HI GCNGC 2 cut(s) 108, 123
FspBI CTAG 2 cut(s) 44, 104
GlaI GCGC 1 cut(s) 30
GluI GCNGC 2 cut(s) 108, 123
GsaI CCCAGC 1 cut(s) 147
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 2 cut(s) 35, 83
HapII CCGG 2 cut(s) 197, 212
HhaI GCGC 1 cut(s) 31
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HincII GTYRAC 1 cut(s) 179
HindII GTYRAC 1 cut(s) 179
HpaII CCGG 2 cut(s) 197, 212
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 3 cut(s) 118, 179, 202
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 3 cut(s) 118, 179, 202
HpyAV CCTTC 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 99
HspAI GCGC 1 cut(s) 29
Lsp1109I GCAGC 2 cut(s) 109, 119
LweI GCATC 1 cut(s) 104
MaeI CTAG 2 cut(s) 44, 104
MboII GAAGA 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 43
MnlI CCTC 4 cut(s) 45, 61, 163, 216
MspI CCGG 2 cut(s) 197, 212
MspR9I CCNGG 3 cut(s) 80, 86, 212
MvaI CCWGG 2 cut(s) 80, 86
NciI CCSGG 1 cut(s) 212
NheI GCTAGC 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 85
PfoI TCCNGGA 1 cut(s) 210
PinAI ACCGGT 1 cut(s) 196
PkrI GCNGC 2 cut(s) 109, 124
Psp6I CCWGG 2 cut(s) 78, 84
PspFI CCCAGC 1 cut(s) 143
PspGI CCWGG 2 cut(s) 78, 84
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 2 cut(s) 34, 82
PstNI CAGNNNCTG 1 cut(s) 85
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SatI GCNGC 2 cut(s) 108, 123
Sau96I GGNCC 2 cut(s) 34, 82
ScrFI CCNGG 3 cut(s) 80, 86, 212
SduI GDGCHC 1 cut(s) 43
SetI ASST 2 cut(s) 105, 163
SfaNI GCATC 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
SsiI CCGC 3 cut(s) 150, 174, 242
SspMI CTAG 2 cut(s) 44, 104
StyD4I CCNGG 3 cut(s) 78, 84, 210
TatI WGTACW 1 cut(s) 60
TseI GCWGC 2 cut(s) 107, 122
TspDTI ATGAA 1 cut(s) 33
TspGWI ACGGA 2 cut(s) 182, 196
Van91I CCANNNNNTGG 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 2 cut(s) 44, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.