Rmu_sc0006059.1_g000064

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006059.1
OG0000633
Physical Location & Seq
Forward (+)
221783 .. 222402
620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006059.1_g000064.1.cds

Sequence Viewer

Length: 282 bp
atgtggtttgatcccacgagggcacctagcgttggaattgaaactcatgggcttggaaccttggaccctgtggcagacaggtgcttatcactgatctgggaccctctaatcccggtgtcggagatggaagccatgctagcggaaattacagctttccatgagcaaggtcgaatcgatcaagaacaacagagaatcgaccgcgagaccaatctcctctcgcagcaaaggctacaagagctagaggacgagaatacagctctcgctcgagcgctagacatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.59

Weight (kDa)

4.28

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AccII CGCG 1 cut(s) 201
AciI CCGC 2 cut(s) 140, 199
AclWI GGATC 1 cut(s) 5
AfeI AGCGCT 1 cut(s) 270
AfiI CCNNNNNNNGG 2 cut(s) 32, 118
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 1 cut(s) 41
AluBI AGCT 3 cut(s) 152, 238, 257
AluI AGCT 3 cut(s) 152, 238, 257
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 1 cut(s) 5
Ama87I CYCGRG 1 cut(s) 264
Aor51HI AGCGCT 1 cut(s) 270
ApeKI GCWGC 1 cut(s) 220
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 2 cut(s) 64, 100
AsuC2I CCSGG 1 cut(s) 113
AsuNHI GCTAGC 1 cut(s) 136
AvaI CYCGRG 1 cut(s) 264
AvaII GGWCC 2 cut(s) 64, 100
BaeGI GKGCMC 1 cut(s) 25
BanI GGYRCC 1 cut(s) 22
BauI CACGAG 1 cut(s) 16
BbvI GCAGC 1 cut(s) 232
BccI CCATC 1 cut(s) 118
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 4 cut(s) 27, 137, 239, 272
BfoI RGCGCY 1 cut(s) 272
BisI GCNGC 1 cut(s) 221
BlsI GCNGC 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 2 cut(s) 64, 100
BmeT110I CYCGRG 1 cut(s) 264
BmgT120I GGNCC 2 cut(s) 64, 100
BmiI GGNNCC 5 cut(s) 24, 58, 66, 101, 102
BmrFI CCNGG 1 cut(s) 113
BmtI GCTAGC 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 113
Bsa29I ATCGAT 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 118
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 32, 118
BseRI GAGGAG 1 cut(s) 203
BseSI GKGCMC 1 cut(s) 25
BseXI GCAGC 1 cut(s) 232
Bsh1236I CGCG 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 199
BshNI GGYRCC 1 cut(s) 22
BshVI ATCGAT 1 cut(s) 174
BsiEI CGRYCG 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 264
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 32, 118
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 113
Bso31I GGTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 3 cut(s) 10, 93, 175
BspACI CCGC 2 cut(s) 140, 199
BspDI ATCGAT 1 cut(s) 174
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 5 cut(s) 24, 58, 66, 101, 102
BspOI GCTAGC 1 cut(s) 140
BspPI GGATC 1 cut(s) 5
BspT107I GGYRCC 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 3 cut(s) 10, 93, 175
BssSI CACGAG 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 60
Bst2BI CACGAG 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 138
BstFNI CGCG 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 3 cut(s) 13, 96, 178
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 3 cut(s) 10, 93, 175
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 3 cut(s) 137, 226, 235
BstNSI RCATGY 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 25
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 232
Bsu15I ATCGAT 1 cut(s) 174
BsuTUI ATCGAT 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 89
Cac8I GCNNGC 1 cut(s) 138
CfoI GCGC 1 cut(s) 271
Cfr13I GGNCC 2 cut(s) 64, 100
ClaI ATCGAT 1 cut(s) 174
CviAII CATG 4 cut(s) 47, 133, 158, 277
CviJI RGCY 6 cut(s) 52, 131, 152, 229, 238, 257
CviKI_1 RGCY 6 cut(s) 52, 131, 152, 229, 238, 257
DpnI GATC 3 cut(s) 12, 95, 177
DpnII GATC 3 cut(s) 10, 93, 175
Eco130I CCWWGG 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 197
Eco47I GGWCC 2 cut(s) 64, 100
Eco47III AGCGCT 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 264
EcoO109I RGGNCCY 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 4 cut(s) 50, 136, 161, 280
FaiI YATR 4 cut(s) 48, 134, 159, 278
FaqI GGGAC 1 cut(s) 113
FatI CATG 4 cut(s) 46, 132, 157, 276
Fnu4HI GCNGC 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 221
FspBI CTAG 4 cut(s) 27, 137, 239, 272
GlaI GCGC 1 cut(s) 270
GluI GCNGC 1 cut(s) 221
HaeII RGCGCY 1 cut(s) 272
HapII CCGG 1 cut(s) 113
HhaI GCGC 1 cut(s) 271
Hin1II CATG 4 cut(s) 50, 136, 161, 280
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HinfI GANTC 2 cut(s) 171, 192
HpaII CCGG 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 226, 235
Hsp92II CATG 4 cut(s) 50, 136, 161, 280
HspAI GCGC 1 cut(s) 269
KflI GGGWCCC 1 cut(s) 100
Kzo9I GATC 3 cut(s) 10, 93, 175
LpnPI CCDG 4 cut(s) 64, 81, 82, 126
Lsp1109I GCAGC 1 cut(s) 232
MaeI CTAG 4 cut(s) 27, 137, 239, 272
MalI GATC 3 cut(s) 12, 95, 177
MboI GATC 3 cut(s) 10, 93, 175
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 2 cut(s) 36, 144
MmeI TCCRAC 2 cut(s) 13, 99
MnlI CCTC 4 cut(s) 12, 114, 224, 235
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 3 cut(s) 137, 226, 235
NciI CCSGG 1 cut(s) 113
NdeII GATC 3 cut(s) 10, 93, 175
NheI GCTAGC 1 cut(s) 136
NlaIII CATG 4 cut(s) 50, 136, 161, 280
NlaIV GGNNCC 5 cut(s) 24, 58, 66, 101, 102
NspI RCATGY 1 cut(s) 280
PaeR7I CTCGAG 1 cut(s) 264
PciI ACATGT 1 cut(s) 276
PfeI GAWTC 2 cut(s) 171, 192
PkrI GCNGC 1 cut(s) 222
PpuMI RGGWCCY 1 cut(s) 100
PscI ACATGT 1 cut(s) 276
Psp5II RGGWCCY 1 cut(s) 100
PspN4I GGNNCC 5 cut(s) 24, 58, 66, 101, 102
PspPI GGNCC 2 cut(s) 64, 100
PspPPI RGGWCCY 1 cut(s) 100
PspXI VCTCGAGB 1 cut(s) 264
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 3 cut(s) 10, 93, 175
Sau96I GGNCC 2 cut(s) 64, 100
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 25
SetI ASST 7 cut(s) 28, 62, 83, 154, 169, 240, 259
Sfr274I CTCGAG 1 cut(s) 264
SinI GGWCC 2 cut(s) 64, 100
SlaI CTCGAG 1 cut(s) 264
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
Sse9I AATT 2 cut(s) 36, 144
SsiI CCGC 2 cut(s) 140, 199
SspMI CTAG 4 cut(s) 27, 137, 239, 272
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 60
TaqI TCGA 4 cut(s) 169, 174, 195, 265
TasI AATT 2 cut(s) 36, 144
TfiI GAWTC 2 cut(s) 171, 192
TscAI CASTG 1 cut(s) 96
TseI GCWGC 1 cut(s) 220
TspRI CASTG 1 cut(s) 96
VpaK11BI GGWCC 2 cut(s) 64, 100
XceI RCATGY 1 cut(s) 280
XhoI CTCGAG 1 cut(s) 264
XspI CTAG 4 cut(s) 27, 137, 239, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.