Rroxscaffold_1G00018250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000633
Physical Location & Seq
Forward (+)
22437276 .. 22438033
758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00018250.1

Sequence Viewer

Length: 489 bp
ATGACACTGCTCTTTACAAGTGAGCAACTCTTTAAATGCCCTTCAGCGAGGGTAGAGGCTGCGAAGAACCGAGACACCAGGTGTCCTCGGGTCCTTTCGACCAAGAAGTACGAGGGACCGCCGAAGGTACAGCGGGGAGAGAATGAAACATTGAAATCTTTGTCAACCGGTGGCAAGGGGCTACCCCCAAGTGCGGGATCTAACAACGAGTTGGCGGAATTGGCTTTCAAAAGGGGACTAAGGCCCGGGGACTTCTTATATGGGATTAATCATCATCCCTCGCCTAGCTACGACGAGTTGATGGCCACACCATTAGACACGCATAGGCTGAATTCTAAACATACGGGGATAACGTCGACTAGAAGAAGAACCGCCAACCCGGCCCAAGTGGTCAAGGATGAGCCAAGAAAGCAAGAATGGGCTCGGGATGGGGGGACGATCACCCACACTACAAGCAAGAGGAGCAAGGAGTCCTCGTCCCGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.97

Weight (kDa)

10.0

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 356
AciI CCGC 5 cut(s) 119, 133, 194, 215, 372
AclWI GGATC 1 cut(s) 205
AcoI YGGCCR 1 cut(s) 303
AcsI RAATTY 1 cut(s) 331
AcuI CTGAAG 1 cut(s) 27
AdeI CACNNNGTG 1 cut(s) 81
AfaI GTAC 2 cut(s) 110, 129
AfiI CCNNNNNNNGG 3 cut(s) 193, 194, 480
AgeI ACCGGT 1 cut(s) 167
AgsI TTSAA 2 cut(s) 154, 229
AjnI CCWGG 1 cut(s) 77
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 1 cut(s) 205
Ama87I CYCGRG 3 cut(s) 87, 245, 423
AoxI GGCC 3 cut(s) 242, 303, 381
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 331
AseI ATTAAT 1 cut(s) 267
AsiGI ACCGGT 1 cut(s) 167
AspS9I GGNCC 4 cut(s) 91, 116, 243, 382
AsuC2I CCSGG 4 cut(s) 246, 247, 380, 481
AsuHPI GGTGA 1 cut(s) 433
AvaI CYCGRG 3 cut(s) 87, 245, 423
AvaII GGWCC 2 cut(s) 91, 116
BalI TGGCCA 1 cut(s) 305
BanII GRGCYC 1 cut(s) 424
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 295, 422
BciT130I CCWGG 1 cut(s) 79
BcnI CCSGG 4 cut(s) 246, 247, 380, 481
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 3 cut(s) 285, 360, 487
BglI GCCNNNNNGGC 1 cut(s) 380
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 5 cut(s) 79, 246, 247, 380, 481
Bme18I GGWCC 2 cut(s) 91, 116
BmeT110I CYCGRG 3 cut(s) 87, 245, 423
BmgT120I GGNCC 4 cut(s) 91, 116, 243, 382
BmiI GGNNCC 2 cut(s) 92, 117
BmrFI CCNGG 5 cut(s) 79, 246, 247, 380, 481
BpuMI CCSGG 4 cut(s) 246, 247, 380, 481
BsaJI CCNNGG 3 cut(s) 86, 245, 246
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 1 cut(s) 461
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 194, 480
Bse118I RCCGGY 1 cut(s) 167
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 3 cut(s) 86, 245, 246
BseGI GGATG 3 cut(s) 274, 403, 433
BseLI CCNNNNNNNGG 3 cut(s) 193, 194, 480
BseRI GAGGAG 1 cut(s) 475
BseXI GCAGC 1 cut(s) 46
BshFI GGCC 3 cut(s) 244, 305, 383
BshTI ACCGGT 1 cut(s) 167
BsiHKCI CYCGRG 3 cut(s) 87, 245, 423
BsiSI CCGG 4 cut(s) 168, 246, 380, 481
BslFI GGGAC 5 cut(s) 129, 249, 263, 448, 463
BslI CCNNNNNNNGG 3 cut(s) 193, 194, 480
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 5 cut(s) 129, 249, 263, 448, 463
BsnI GGCC 3 cut(s) 244, 305, 383
BsoBI CYCGRG 3 cut(s) 87, 245, 423
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 3 cut(s) 197, 438, 483
BspACI CCGC 5 cut(s) 119, 133, 194, 215, 372
BspANI GGCC 3 cut(s) 244, 305, 383
BspLI GGNNCC 2 cut(s) 92, 117
BspPI GGATC 1 cut(s) 205
BsrFI RCCGGY 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 3 cut(s) 86, 245, 246
BssMI GATC 3 cut(s) 197, 438, 483
Bst2UI CCWGG 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 239
BstF5I GGATG 3 cut(s) 274, 403, 433
BstKTI GATC 3 cut(s) 200, 441, 486
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 3 cut(s) 197, 438, 483
BstMWI GCNNNNNNNGC 4 cut(s) 221, 380, 409, 462
BstNI CCWGG 1 cut(s) 79
BstSCI CCNGG 5 cut(s) 77, 244, 245, 378, 479
BstV1I GCAGC 1 cut(s) 46
BstX2I RGATCY 2 cut(s) 197, 483
BstYI RGATCY 2 cut(s) 197, 483
BsuRI GGCC 3 cut(s) 244, 305, 383
BtsCI GGATG 3 cut(s) 274, 403, 433
BtsI GCAGTG 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 5
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 4 cut(s) 91, 116, 243, 382
Cfr9I CCCGGG 1 cut(s) 245
CsiI ACCWGGT 1 cut(s) 77
Csp6I GTAC 2 cut(s) 109, 128
CspAI ACCGGT 1 cut(s) 167
CviQI GTAC 2 cut(s) 109, 128
DdeI CTNAG 1 cut(s) 239
DpnI GATC 3 cut(s) 199, 440, 485
DpnII GATC 3 cut(s) 197, 438, 483
DraI TTTAAA 1 cut(s) 34
DraIII CACNNNGTG 1 cut(s) 81
EaeI YGGCCR 1 cut(s) 303
EciI GGCGGA 1 cut(s) 230
Eco24I GRGCYC 1 cut(s) 424
Eco47I GGWCC 2 cut(s) 91, 116
Eco57I CTGAAG 1 cut(s) 27
Eco88I CYCGRG 3 cut(s) 87, 245, 423
EcoO109I RGGNCCY 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 77
EcoT38I GRGCYC 1 cut(s) 424
FaiI YATR 4 cut(s) 259, 261, 324, 342
FaqI GGGAC 5 cut(s) 129, 249, 263, 448, 463
FauI CCCGC 2 cut(s) 126, 187
FblI GTMKAC 1 cut(s) 356
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 3 cut(s) 261, 410, 440
FriOI GRGCYC 1 cut(s) 424
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 3 cut(s) 285, 360, 487
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 3 cut(s) 244, 305, 383
HapII CCGG 4 cut(s) 168, 246, 380, 481
HincII GTYRAC 2 cut(s) 165, 357
HindII GTYRAC 2 cut(s) 165, 357
HinfI GANTC 1 cut(s) 470
HpaII CCGG 4 cut(s) 168, 246, 380, 481
HphI GGTGA 1 cut(s) 433
Hpy166II GTNNAC 2 cut(s) 165, 357
Hpy188III TCNNGA 1 cut(s) 425
Hpy8I GTNNAC 2 cut(s) 165, 357
Hpy99I CGWCG 2 cut(s) 296, 358
HpyAV CCTTC 2 cut(s) 51, 118
HpyCH4IV ACGT 1 cut(s) 353
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 380, 409, 462
HpyF3I CTNAG 1 cut(s) 239
HpySE526I ACGT 1 cut(s) 353
Kzo9I GATC 3 cut(s) 197, 438, 483
LmnI GCTCC 1 cut(s) 462
LpnPI CCDG 5 cut(s) 64, 91, 181, 259, 393
Lsp1109I GCAGC 1 cut(s) 46
MabI ACCWGGT 1 cut(s) 77
MaeI CTAG 3 cut(s) 285, 360, 487
MaeII ACGT 1 cut(s) 353
MalI GATC 3 cut(s) 199, 440, 485
MboI GATC 3 cut(s) 197, 438, 483
MboII GAAGA 3 cut(s) 76, 375, 378
MflI RGATCY 2 cut(s) 197, 483
MhlI GDGCHC 1 cut(s) 424
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 2 cut(s) 218, 331
MluNI TGGCCA 1 cut(s) 305
MlyI GAGTC 1 cut(s) 479
MnlI CCTC 7 cut(s) 42, 49, 96, 106, 289, 453, 484
Mox20I TGGCCA 1 cut(s) 305
MscI TGGCCA 1 cut(s) 305
MseI TTAA 2 cut(s) 33, 267
Msp20I TGGCCA 1 cut(s) 305
MspA1I CMGCKG 1 cut(s) 133
MspI CCGG 4 cut(s) 168, 246, 380, 481
MspR9I CCNGG 5 cut(s) 79, 246, 247, 380, 481
MvaI CCWGG 1 cut(s) 79
MwoI GCNNNNNNNGC 4 cut(s) 221, 380, 409, 462
NciI CCSGG 4 cut(s) 246, 247, 380, 481
NdeII GATC 3 cut(s) 197, 438, 483
NlaIV GGNNCC 2 cut(s) 92, 117
PcsI WCGNNNNNNNCGW 1 cut(s) 350
PfoI TCCNGGA 1 cut(s) 479
PinAI ACCGGT 1 cut(s) 167
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 478
PpsI GAGTC 1 cut(s) 478
PpuMI RGGWCCY 1 cut(s) 91
PshBI ATTAAT 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 77
PspGI CCWGG 1 cut(s) 77
PspN4I GGNNCC 2 cut(s) 92, 117
PspPI GGNCC 4 cut(s) 91, 116, 243, 382
PspPPI RGGWCCY 1 cut(s) 91
PsuI RGATCY 2 cut(s) 197, 483
RsaI GTAC 2 cut(s) 110, 129
RsaNI GTAC 2 cut(s) 109, 128
SalI GTCGAC 1 cut(s) 355
SaqAI TTAA 2 cut(s) 33, 267
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 3 cut(s) 197, 438, 483
Sau96I GGNCC 4 cut(s) 91, 116, 243, 382
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 5 cut(s) 79, 246, 247, 380, 481
SduI GDGCHC 1 cut(s) 424
SetI ASST 4 cut(s) 83, 129, 290, 356
SexAI ACCWGGT 1 cut(s) 77
SinI GGWCC 2 cut(s) 91, 116
SmaI CCCGGG 1 cut(s) 247
Sse9I AATT 2 cut(s) 218, 331
SsiI CCGC 5 cut(s) 119, 133, 194, 215, 372
SspMI CTAG 3 cut(s) 285, 360, 487
StyD4I CCNGG 5 cut(s) 77, 244, 245, 378, 479
TaiI ACGT 1 cut(s) 356
TaqI TCGA 2 cut(s) 98, 356
TasI AATT 2 cut(s) 218, 331
Tru1I TTAA 2 cut(s) 33, 267
Tru9I TTAA 2 cut(s) 33, 267
TscAI CASTG 1 cut(s) 12
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 159
TspMI CCCGGG 1 cut(s) 245
TspRI CASTG 1 cut(s) 12
VpaK11BI GGWCC 2 cut(s) 91, 116
VspI ATTAAT 1 cut(s) 267
XapI RAATTY 1 cut(s) 331
XmaI CCCGGG 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 356
XspI CTAG 3 cut(s) 285, 360, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.