Rroxscaffold_6G00401050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000633
Physical Location & Seq
Forward (+)
23282205 .. 23296405
14201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401050.1

Sequence Viewer

Length: 294 bp
ATGGGCCGAGTTCACGACCCACCATGGCGGGGCTCATATGGGATGTCACCCCAAGCACCTAGGGCCGGGGCATGGCTAGCACAGCCCATCCGATTACATAACGAGAGGGCTTATAAGGCATCAAGAGAACAGCTTGCGGCCCACATCGAAGATAGGGGAAACTCCTTTCCCATGCTAGAATTAGTGATTGATAGAATTGTTTTGATGATTCAGGGGCCTTCTCCTCTAAAATCCTGGCTACTCGAACCTTTGATTACAACACCCATCGCGATTCCAGCCACGTTCCCCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.84

Weight (kDa)

9.51

Isoelectric Point (pI)

53.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 114
AccII CGCG 1 cut(s) 269
AciI CCGC 2 cut(s) 28, 137
AfiI CCNNNNNNNGG 3 cut(s) 29, 65, 72
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
AoxI GGCC 4 cut(s) 4, 63, 138, 215
AspA2I CCTAGG 1 cut(s) 59
AspS9I GGNCC 4 cut(s) 4, 63, 139, 215
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 39
AsuNHI GCTAGC 1 cut(s) 76
AvrII CCTAGG 1 cut(s) 59
BanII GRGCYC 1 cut(s) 35
BccI CCATC 2 cut(s) 95, 272
BciT130I CCWGG 1 cut(s) 235
BcnI CCSGG 1 cut(s) 67
BfaI CTAG 3 cut(s) 60, 77, 176
BisI GCNGC 1 cut(s) 138
BlnI CCTAGG 1 cut(s) 59
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 2 cut(s) 67, 235
BmgT120I GGNCC 4 cut(s) 4, 63, 139, 215
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 2 cut(s) 67, 235
BmsI GCATC 1 cut(s) 128
BmtI GCTAGC 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 67
BsaJI CCNNGG 3 cut(s) 23, 59, 66
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 65, 72
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 3 cut(s) 23, 59, 66
BseGI GGATG 2 cut(s) 48, 87
BseLI CCNNNNNNNGG 3 cut(s) 29, 65, 72
BseRI GAGGAG 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 4 cut(s) 6, 65, 140, 217
BsiSI CCGG 1 cut(s) 66
BslI CCNNNNNNNGG 3 cut(s) 29, 65, 72
BsnI GGCC 4 cut(s) 6, 65, 140, 217
Bsp1286I GDGCHC 1 cut(s) 35
Bsp19I CCATGG 1 cut(s) 23
Bsp68I TCGCGA 1 cut(s) 269
BspACI CCGC 2 cut(s) 28, 137
BspANI GGCC 4 cut(s) 6, 65, 140, 217
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 216
BspOI GCTAGC 1 cut(s) 80
BssECI CCNNGG 3 cut(s) 23, 59, 66
BssT1I CCWWGG 2 cut(s) 23, 59
Bst2UI CCWGG 1 cut(s) 235
BstC8I GCNNGC 2 cut(s) 78, 135
BstDSI CCRYGG 1 cut(s) 23
BstF5I GGATG 2 cut(s) 48, 87
BstFNI CGCG 1 cut(s) 269
BstMWI GCNNNNNNNGC 5 cut(s) 62, 77, 82, 116, 275
BstNI CCWGG 1 cut(s) 235
BstSCI CCNGG 2 cut(s) 65, 233
BstUI CGCG 1 cut(s) 269
BsuRI GGCC 4 cut(s) 6, 65, 140, 217
BtgI CCRYGG 1 cut(s) 23
BtgZI GCGATG 1 cut(s) 250
BtsCI GGATG 2 cut(s) 48, 87
BtuMI TCGCGA 1 cut(s) 269
Cac8I GCNNGC 2 cut(s) 78, 135
Cfr13I GGNCC 4 cut(s) 4, 63, 139, 215
CviAII CATG 3 cut(s) 24, 72, 172
Eco130I CCWWGG 2 cut(s) 23, 59
Eco24I GRGCYC 1 cut(s) 35
EcoO109I RGGNCCY 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 233
EcoT14I CCWWGG 2 cut(s) 23, 59
EcoT38I GRGCYC 1 cut(s) 35
ErhI CCWWGG 2 cut(s) 23, 59
FaeI CATG 3 cut(s) 27, 75, 175
FaiI YATR 7 cut(s) 25, 37, 39, 73, 99, 114, 173
FatI CATG 3 cut(s) 23, 71, 171
FauI CCCGC 1 cut(s) 21
FauNDI CATATG 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 2 cut(s) 55, 74
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 3 cut(s) 60, 77, 176
GluI GCNGC 1 cut(s) 138
HaeIII GGCC 4 cut(s) 6, 65, 140, 217
HapII CCGG 1 cut(s) 66
Hin1II CATG 3 cut(s) 27, 75, 175
HinfI GANTC 2 cut(s) 208, 271
HpaII CCGG 1 cut(s) 66
HphI GGTGA 1 cut(s) 39
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 92
Hpy188III TCNNGA 4 cut(s) 14, 123, 268, 291
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 228
HpyCH4IV ACGT 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 77, 82, 116, 275
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 3 cut(s) 27, 75, 175
LpnPI CCDG 5 cut(s) 79, 197, 220, 247, 288
LweI GCATC 1 cut(s) 128
MaeI CTAG 3 cut(s) 60, 77, 176
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 45
MboII GAAGA 1 cut(s) 161
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 2 cut(s) 179, 195
MnlI CCTC 2 cut(s) 99, 234
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 2 cut(s) 67, 235
MvaI CCWGG 1 cut(s) 235
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 5 cut(s) 62, 77, 82, 116, 275
NciI CCSGG 1 cut(s) 67
NcoI CCATGG 1 cut(s) 23
NdeI CATATG 1 cut(s) 37
NheI GCTAGC 1 cut(s) 76
NlaIII CATG 3 cut(s) 27, 75, 175
NlaIV GGNNCC 1 cut(s) 216
NmeAIII GCCGAG 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 45
NruI TCGCGA 1 cut(s) 269
PfeI GAWTC 2 cut(s) 208, 271
PkrI GCNGC 1 cut(s) 139
PsiI TTATAA 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 4 cut(s) 4, 63, 139, 215
RruI TCGCGA 1 cut(s) 269
SatI GCNGC 1 cut(s) 138
Sau96I GGNCC 4 cut(s) 4, 63, 139, 215
ScrFI CCNGG 2 cut(s) 67, 235
SduI GDGCHC 1 cut(s) 35
SetI ASST 4 cut(s) 61, 135, 250, 284
SfaNI GCATC 1 cut(s) 128
Sse9I AATT 2 cut(s) 179, 195
SsiI CCGC 2 cut(s) 28, 137
SspMI CTAG 3 cut(s) 60, 77, 176
StyD4I CCNGG 2 cut(s) 65, 233
StyI CCWWGG 2 cut(s) 23, 59
TaiI ACGT 1 cut(s) 284
TaqI TCGA 2 cut(s) 147, 243
TasI AATT 2 cut(s) 179, 195
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 2 cut(s) 208, 271
TseFI GTSAC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 45
XmaJI CCTAGG 1 cut(s) 59
XspI CTAG 3 cut(s) 60, 77, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.