Rmu_sc0001782.1_g000037

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001782.1
OG0000633
Physical Location & Seq
Forward (+)
183658 .. 184430
773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001782.1_g000037.1.cds

Sequence Viewer

Length: 525 bp
atgatggtgatcatcggagatgacataacggacacccagggcctcagacccgaccaacacattccatccatgaggacatcagaaggcagaactacaaagcgaacctacgtcccacatcgaggagaatggatactcatttcccatgctcatataaggaatcagccctaccaccctttctggggtgagggcagaaatgttgccctagcattaatattcactccgggcacttcatcaacatcgacgccaagtgtcggaagagagacacatggtctgggattcttagacccgcagaacacaagcaacccacggataccccatccagcagccccggtctctgaattggaagccatgcgggcagagattgcagctttcctggaacaagctcggatcgatagggaacaacagaggctcgatagagagactaacctcctctcacaacagaggttacaagagttggaggatgagaatactacactcgcccgggcgctggaccaaagacaccaacataatgaagcactcacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.73

Weight (kDa)

5.97

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 287, 352
AclWI GGATC 1 cut(s) 395
AcyI GRCGYC 1 cut(s) 242
AfiI CCNNNNNNNGG 5 cut(s) 119, 178, 179, 251, 487
AhdI GACNNNNNGTC 1 cut(s) 267
AjnI CCWGG 2 cut(s) 36, 372
AluBI AGCT 2 cut(s) 368, 383
AluI AGCT 2 cut(s) 368, 383
Alw26I GTCTC 3 cut(s) 254, 337, 413
AlwI GGATC 1 cut(s) 395
Ama87I CYCGRG 1 cut(s) 480
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 2 cut(s) 323, 365
AseI ATTAAT 1 cut(s) 209
AspLEI GCGC 1 cut(s) 487
AspS9I GGNCC 2 cut(s) 40, 490
AsuC2I CCSGG 4 cut(s) 222, 329, 481, 482
AsuHPI GGTGA 2 cut(s) 19, 194
AvaI CYCGRG 1 cut(s) 480
AvaII GGWCC 1 cut(s) 490
BaeGI GKGCMC 1 cut(s) 227
BbvI GCAGC 2 cut(s) 335, 377
BccI CCATC 2 cut(s) 73, 324
BciT130I CCWGG 2 cut(s) 38, 374
BciVI GTATCC 2 cut(s) 123, 303
BclI TGATCA 1 cut(s) 9
BcnI CCSGG 4 cut(s) 222, 329, 481, 482
BcoDI GTCTC 3 cut(s) 254, 337, 413
BfaI CTAG 1 cut(s) 203
BfoI RGCGCY 1 cut(s) 488
BfuI GTATCC 2 cut(s) 123, 303
BglI GCCNNNNNGGC 1 cut(s) 353
BisI GCNGC 2 cut(s) 324, 366
BlsI GCNGC 2 cut(s) 325, 367
Bme1390I CCNGG 6 cut(s) 38, 222, 329, 374, 481, 482
Bme18I GGWCC 1 cut(s) 490
BmeRI GACNNNNNGTC 1 cut(s) 267
BmeT110I CYCGRG 1 cut(s) 480
BmgT120I GGNCC 2 cut(s) 40, 490
BmrFI CCNGG 6 cut(s) 38, 222, 329, 374, 481, 482
BpuMI CCSGG 4 cut(s) 222, 329, 481, 482
Bsa29I ATCGAT 1 cut(s) 390
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 337
BsaJI CCNNGG 5 cut(s) 36, 37, 305, 327, 480
Bsc4I CCNNNNNNNGG 5 cut(s) 119, 178, 179, 251, 487
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 2 cut(s) 38, 374
BseCI ATCGAT 1 cut(s) 390
BseDI CCNNGG 5 cut(s) 36, 37, 305, 327, 480
BseGI GGATG 3 cut(s) 65, 316, 466
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 5 cut(s) 119, 178, 179, 251, 487
BseMII CTCAG 1 cut(s) 58
BseRI GAGGAG 2 cut(s) 135, 419
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 2 cut(s) 335, 377
BshFI GGCC 1 cut(s) 42
BshVI ATCGAT 1 cut(s) 390
BsiHKCI CYCGRG 1 cut(s) 480
BsiSI CCGG 3 cut(s) 221, 329, 481
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 5 cut(s) 119, 178, 179, 251, 487
BsmAI GTCTC 3 cut(s) 254, 337, 413
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 1 cut(s) 42
Bso31I GGTCTC 1 cut(s) 337
BsoBI CYCGRG 1 cut(s) 480
Bsp1286I GDGCHC 1 cut(s) 227
Bsp143I GATC 2 cut(s) 9, 387
BspACI CCGC 2 cut(s) 287, 352
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 57
BspDI ATCGAT 1 cut(s) 390
BspPI GGATC 1 cut(s) 395
BspTNI GGTCTC 1 cut(s) 337
BssECI CCNNGG 5 cut(s) 36, 37, 305, 327, 480
BssMI GATC 2 cut(s) 9, 387
BssNI GRCGYC 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 38, 374
Bst6I CTCTTC 1 cut(s) 250
BstACI GRCGYC 1 cut(s) 242
BstAPI GCANNNNNTGC 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 3 cut(s) 44, 280, 522
BstDSI CCRYGG 1 cut(s) 305
BstF5I GGATG 3 cut(s) 65, 316, 466
BstH2I RGCGCY 1 cut(s) 488
BstHHI GCGC 1 cut(s) 487
BstKTI GATC 2 cut(s) 12, 390
BstMAI GTCTC 3 cut(s) 254, 337, 413
BstMBI GATC 2 cut(s) 9, 387
BstMWI GCNNNNNNNGC 2 cut(s) 353, 362
BstNI CCWGG 2 cut(s) 38, 374
BstSCI CCNGG 6 cut(s) 36, 220, 327, 372, 479, 480
BstSLI GKGCMC 1 cut(s) 227
BstV1I GCAGC 2 cut(s) 335, 377
Bsu15I ATCGAT 1 cut(s) 390
BsuI GTATCC 2 cut(s) 123, 303
BsuRI GGCC 1 cut(s) 42
BsuTUI ATCGAT 1 cut(s) 390
BtgI CCRYGG 1 cut(s) 305
BtsCI GGATG 3 cut(s) 65, 316, 466
Cac8I GCNNGC 1 cut(s) 354
CfoI GCGC 1 cut(s) 487
Cfr13I GGNCC 2 cut(s) 40, 490
Cfr9I CCCGGG 1 cut(s) 480
ClaI ATCGAT 1 cut(s) 390
CseI GACGC 1 cut(s) 250
CviAII CATG 4 cut(s) 70, 143, 266, 349
CviJI RGCY 7 cut(s) 42, 163, 326, 347, 368, 383, 409
CviKI_1 RGCY 7 cut(s) 42, 163, 326, 347, 368, 383, 409
DdeI CTNAG 3 cut(s) 44, 280, 522
DpnI GATC 2 cut(s) 11, 389
DpnII GATC 2 cut(s) 9, 387
DriI GACNNNNNGTC 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 250
Eam1105I GACNNNNNGTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 490
Eco88I CYCGRG 1 cut(s) 480
EcoO109I RGGNCCY 1 cut(s) 40
EcoRII CCWGG 2 cut(s) 36, 372
FaeI CATG 4 cut(s) 73, 146, 269, 352
FaiI YATR 8 cut(s) 26, 71, 144, 150, 152, 267, 350, 507
FaqI GGGAC 1 cut(s) 95
FatI CATG 4 cut(s) 69, 142, 265, 348
FauI CCCGC 2 cut(s) 294, 345
FbaI TGATCA 1 cut(s) 9
Fnu4HI GCNGC 2 cut(s) 324, 366
FokI GGATG 3 cut(s) 52, 303, 473
Fsp4HI GCNGC 2 cut(s) 324, 366
FspBI CTAG 1 cut(s) 203
GlaI GCGC 1 cut(s) 486
GluI GCNGC 2 cut(s) 324, 366
HaeII RGCGCY 1 cut(s) 488
HaeIII GGCC 1 cut(s) 42
HapII CCGG 3 cut(s) 221, 329, 481
HgaI GACGC 1 cut(s) 250
HhaI GCGC 1 cut(s) 487
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 4 cut(s) 73, 146, 269, 352
Hin6I GCGC 1 cut(s) 485
HinP1I GCGC 1 cut(s) 485
HinfI GANTC 2 cut(s) 157, 276
HpaII CCGG 3 cut(s) 221, 329, 481
HphI GGTGA 2 cut(s) 19, 194
Hpy188I TCNGA 6 cut(s) 17, 47, 82, 254, 337, 387
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 362
HpyF3I CTNAG 3 cut(s) 44, 280, 522
HpySE526I ACGT 1 cut(s) 108
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 4 cut(s) 73, 146, 269, 352
HspAI GCGC 1 cut(s) 485
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 2 cut(s) 9, 387
Lsp1109I GCAGC 2 cut(s) 335, 377
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 444
MalI GATC 2 cut(s) 11, 389
MboI GATC 2 cut(s) 9, 387
MboII GAAGA 1 cut(s) 267
MhlI GDGCHC 1 cut(s) 227
MluCI AATT 1 cut(s) 338
MmeI TCCRAC 2 cut(s) 232, 435
MnlI CCTC 9 cut(s) 53, 66, 113, 178, 399, 435, 437, 440, 451
MseI TTAA 1 cut(s) 209
MspI CCGG 3 cut(s) 221, 329, 481
MspR9I CCNGG 6 cut(s) 38, 222, 329, 374, 481, 482
MvaI CCWGG 2 cut(s) 38, 374
MwoI GCNNNNNNNGC 2 cut(s) 353, 362
NciI CCSGG 4 cut(s) 222, 329, 481, 482
NdeII GATC 2 cut(s) 9, 387
NlaIII CATG 4 cut(s) 73, 146, 269, 352
PasI CCCWGGG 1 cut(s) 37
PfeI GAWTC 2 cut(s) 157, 276
PfoI TCCNGGA 1 cut(s) 372
PkrI GCNGC 2 cut(s) 325, 367
PshBI ATTAAT 1 cut(s) 209
Psp6I CCWGG 2 cut(s) 36, 372
PspGI CCWGG 2 cut(s) 36, 372
PspPI GGNCC 2 cut(s) 40, 490
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 2 cut(s) 324, 366
Sau3AI GATC 2 cut(s) 9, 387
Sau96I GGNCC 2 cut(s) 40, 490
ScrFI CCNGG 6 cut(s) 38, 222, 329, 374, 481, 482
SduI GDGCHC 1 cut(s) 227
SetI ASST 6 cut(s) 107, 111, 370, 385, 429, 446
SinI GGWCC 1 cut(s) 490
SmaI CCCGGG 1 cut(s) 482
SrfI GCCCGGGC 1 cut(s) 482
Sse9I AATT 1 cut(s) 338
SsiI CCGC 2 cut(s) 287, 352
SspI AATATT 1 cut(s) 213
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 6 cut(s) 36, 220, 327, 372, 479, 480
TaiI ACGT 1 cut(s) 111
TaqI TCGA 4 cut(s) 118, 239, 390, 411
TasI AATT 1 cut(s) 338
TfiI GAWTC 2 cut(s) 157, 276
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TseI GCWGC 2 cut(s) 323, 365
TspDTI ATGAA 2 cut(s) 219, 525
TspGWI ACGGA 2 cut(s) 44, 322
TspMI CCCGGG 1 cut(s) 480
VpaK11BI GGWCC 1 cut(s) 490
VspI ATTAAT 1 cut(s) 209
XmaI CCCGGG 1 cut(s) 480
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.