Rroxscaffold_5G00378590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000633
Physical Location & Seq
Forward (+)
59037559 .. 59046113
8555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378590.1

Sequence Viewer

Length: 729 bp
ATGCAGGCCAGCTTTCCATCAAATTCCTCACCGGCGGTGACCTGTCGGCAATGCGACATGGCACGGGCTACCGACCGTGCCGATGACCGTGATGCTGACTTGGCTTGGTCGGAGTTGGATCGGTATCCTAGACGGTATAGCATTACGTGTGAGGTACCGGAGAAAGTCACCGAAACATTGGCGCACCGGATAGGGGTGACCCATCATGACCGAGCCGAAGAAACGGTAGGAGAGGGTAGAAGTGTCGCCGGGCACCGATATTCTCTCCGGGTACTTCATCGGTGGAAACGCCAAGTGTCGGAAGAGAAACTCAAGGTCTCGATTCTTGGACCCACACGGCACGGGCAATCCACCAATCACCCGGCACCCGTGAGGCCCCAAATCGGTAGCTGCGGTATTGGAGTTGGAGTATATGCGAACGGAGATCGTAGCCTTCCGGAACAAGCCGAGATTGATCGGGAACAACAAAGAACCGATAGGGAAACAAACCGCCTTTCGCAACAAAGGCTGCAAGAGCTGGAAAATGAAAACACCGCGGCGGCTCGAGCACCGGACCGGAGGCGCCGGCACAATGAGGCACTCACCCAAGCCCCGGCTAGAGCATCCCAAGTAGCGAGCGGACGTAAATGCTGTTCCGTAACGATAGGCCCCGGCCTCGCCCCAACCCCGTCTACGGAAAGCGGCCACCGGATGATCCAGGTACTAGTAGAGTTGTTCTGGAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

27.03

Weight (kDa)

9.01

Isoelectric Point (pI)

54.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 154
AccB1I GGYRCC 4 cut(s) 154, 252, 364, 561
AccBSI CCGCTC 1 cut(s) 618
AccI GTMKAC 1 cut(s) 671
AccII CGCG 1 cut(s) 536
AccIII TCCGGA 1 cut(s) 436
AciI CCGC 8 cut(s) 35, 393, 490, 534, 536, 539, 618, 681
AclWI GGATC 2 cut(s) 126, 688
AcoI YGGCCR 1 cut(s) 682
AcsI RAATTY 1 cut(s) 22
AcyI GRCGYC 1 cut(s) 562
AfaI GTAC 3 cut(s) 156, 273, 702
AfiI CCNNNNNNNGG 5 cut(s) 193, 298, 383, 592, 673
AflIII ACRYGT 1 cut(s) 146
AhlI ACTAGT 1 cut(s) 703
AjnI CCWGG 1 cut(s) 696
AluBI AGCT 4 cut(s) 12, 390, 517, 725
AluI AGCT 4 cut(s) 12, 390, 517, 725
Alw21I GWGCWC 1 cut(s) 550
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 2 cut(s) 126, 688
Ama87I CYCGRG 1 cut(s) 543
Aor13HI TCCGGA 1 cut(s) 436
AoxI GGCC 5 cut(s) 6, 374, 646, 652, 682
ApeKI GCWGC 2 cut(s) 390, 508
ApoI RAATTY 1 cut(s) 22
Asp718I GGTACC 1 cut(s) 154
AspLEI GCGC 2 cut(s) 184, 564
AspS9I GGNCC 4 cut(s) 329, 375, 553, 647
AsuC2I CCSGG 5 cut(s) 250, 269, 362, 593, 651
AsuHPI GGTGA 6 cut(s) 21, 49, 160, 208, 350, 574
AvaI CYCGRG 1 cut(s) 543
AvaII GGWCC 2 cut(s) 329, 553
BaeGI GKGCMC 1 cut(s) 255
BanI GGYRCC 4 cut(s) 154, 252, 364, 561
Bbv12I GWGCWC 1 cut(s) 550
BbvI GCAGC 2 cut(s) 377, 495
BccI CCATC 2 cut(s) 25, 210
BceAI ACGGC 1 cut(s) 353
BciT130I CCWGG 1 cut(s) 698
BciVI GTATCC 1 cut(s) 135
BcnI CCSGG 5 cut(s) 250, 269, 362, 593, 651
BcoDI GTCTC 1 cut(s) 322
BcuI ACTAGT 1 cut(s) 703
BfaI CTAG 3 cut(s) 129, 597, 704
BfoI RGCGCY 1 cut(s) 565
BfuI GTATCC 1 cut(s) 135
BisI GCNGC 5 cut(s) 391, 509, 537, 540, 682
BlsI GCNGC 5 cut(s) 392, 510, 538, 541, 683
Bme1390I CCNGG 6 cut(s) 250, 269, 362, 593, 651, 698
Bme18I GGWCC 2 cut(s) 329, 553
BmeT110I CYCGRG 1 cut(s) 543
BmgT120I GGNCC 4 cut(s) 329, 375, 553, 647
BmiI GGNNCC 7 cut(s) 156, 254, 331, 366, 377, 563, 649
BmrFI CCNGG 6 cut(s) 250, 269, 362, 593, 651, 698
BmsI GCATC 2 cut(s) 82, 611
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 5 cut(s) 250, 269, 362, 593, 651
BsaAI YACGTR 1 cut(s) 147
BsaBI GATNNNNATC 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 562
BsaI GGTCTC 1 cut(s) 322
BsaJI CCNNGG 3 cut(s) 534, 591, 649
BsaWI WCCGGW 6 cut(s) 157, 186, 436, 550, 555, 687
BsaXI ACNNNNNCTCC 2 cut(s) 393, 423
Bsc4I CCNNNNNNNGG 5 cut(s) 193, 298, 383, 592, 673
Bse118I RCCGGY 2 cut(s) 31, 564
Bse3DI GCAATG 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 123
BseAI TCCGGA 1 cut(s) 436
BseBI CCWGG 1 cut(s) 698
BseDI CCNNGG 3 cut(s) 534, 591, 649
BseGI GGATG 2 cut(s) 602, 696
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 5 cut(s) 193, 298, 383, 592, 673
BseMI GCAATG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 2 cut(s) 377, 495
Bsh1236I CGCG 1 cut(s) 536
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 5 cut(s) 8, 376, 648, 654, 684
BshNI GGYRCC 4 cut(s) 154, 252, 364, 561
BsiEI CGRYCG 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 550
BsiHKCI CYCGRG 1 cut(s) 543
BslI CCNNNNNNNGG 5 cut(s) 193, 298, 383, 592, 673
BsmAI GTCTC 1 cut(s) 322
BsnI GGCC 5 cut(s) 8, 376, 648, 654, 684
Bso31I GGTCTC 1 cut(s) 322
BsoBI CYCGRG 1 cut(s) 543
Bsp1286I GDGCHC 2 cut(s) 255, 550
Bsp13I TCCGGA 1 cut(s) 436
Bsp143I GATC 4 cut(s) 118, 424, 454, 693
BspACI CCGC 8 cut(s) 35, 393, 490, 534, 536, 539, 618, 681
BspANI GGCC 5 cut(s) 8, 376, 648, 654, 684
BspEI TCCGGA 1 cut(s) 436
BspFNI CGCG 1 cut(s) 536
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 7 cut(s) 156, 254, 331, 366, 377, 563, 649
BspPI GGATC 2 cut(s) 126, 688
BspT107I GGYRCC 4 cut(s) 154, 252, 364, 561
BspTNI GGTCTC 1 cut(s) 322
BsrBI CCGCTC 1 cut(s) 618
BsrDI GCAATG 1 cut(s) 56
BsrFI RCCGGY 2 cut(s) 31, 564
BssAI RCCGGY 2 cut(s) 31, 564
BssECI CCNNGG 3 cut(s) 534, 591, 649
BssMI GATC 4 cut(s) 118, 424, 454, 693
BssNI GRCGYC 1 cut(s) 562
Bst2UI CCWGG 1 cut(s) 698
Bst4CI ACNGT 4 cut(s) 77, 89, 135, 226
Bst6I CTCTTC 1 cut(s) 297
BstACI GRCGYC 1 cut(s) 562
BstBAI YACGTR 1 cut(s) 147
BstC8I GCNNGC 4 cut(s) 6, 10, 566, 616
BstDSI CCRYGG 1 cut(s) 534
BstEII GGTNACC 2 cut(s) 37, 196
BstF5I GGATG 2 cut(s) 602, 696
BstFNI CGCG 1 cut(s) 536
BstH2I RGCGCY 1 cut(s) 565
BstHHI GCGC 2 cut(s) 184, 564
BstKTI GATC 4 cut(s) 121, 427, 457, 696
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 4 cut(s) 118, 424, 454, 693
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 4 cut(s) 101, 505, 514, 545
BstNI CCWGG 1 cut(s) 698
BstPI GGTNACC 2 cut(s) 37, 196
BstSCI CCNGG 6 cut(s) 248, 267, 360, 591, 649, 696
BstSLI GKGCMC 1 cut(s) 255
BstUI CGCG 1 cut(s) 536
BstV1I GCAGC 2 cut(s) 377, 495
BsuI GTATCC 1 cut(s) 135
BsuRI GGCC 5 cut(s) 8, 376, 648, 654, 684
BtgI CCRYGG 1 cut(s) 534
BtsCI GGATG 2 cut(s) 602, 696
Cac8I GCNNGC 4 cut(s) 6, 10, 566, 616
CciI TCATGA 1 cut(s) 205
CfoI GCGC 2 cut(s) 184, 564
Cfr10I RCCGGY 2 cut(s) 31, 564
Cfr13I GGNCC 4 cut(s) 329, 375, 553, 647
Cfr42I CCGCGG 1 cut(s) 537
CpoI CGGWCCG 1 cut(s) 553
Csp6I GTAC 3 cut(s) 155, 272, 701
CspI CGGWCCG 1 cut(s) 553
CviAII CATG 2 cut(s) 58, 206
CviQI GTAC 3 cut(s) 155, 272, 701
DinI GGCGCC 1 cut(s) 563
DpnI GATC 4 cut(s) 120, 426, 456, 695
DpnII GATC 4 cut(s) 118, 424, 454, 693
EaeI YGGCCR 1 cut(s) 682
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco31I GGTCTC 1 cut(s) 322
Eco47I GGWCC 2 cut(s) 329, 553
Eco88I CYCGRG 1 cut(s) 543
Eco91I GGTNACC 2 cut(s) 37, 196
EcoO109I RGGNCCY 2 cut(s) 375, 647
EcoO65I GGTNACC 2 cut(s) 37, 196
EcoRII CCWGG 1 cut(s) 696
EgeI GGCGCC 1 cut(s) 563
EheI GGCGCC 1 cut(s) 563
FaeI CATG 2 cut(s) 61, 209
FaiI YATR 5 cut(s) 59, 138, 207, 412, 414
FatI CATG 2 cut(s) 57, 205
FblI GTMKAC 1 cut(s) 671
Fnu4HI GCNGC 5 cut(s) 391, 509, 537, 540, 682
FokI GGATG 2 cut(s) 589, 703
Fsp4HI GCNGC 5 cut(s) 391, 509, 537, 540, 682
FspBI CTAG 3 cut(s) 129, 597, 704
GlaI GCGC 2 cut(s) 183, 563
GluI GCNGC 5 cut(s) 391, 509, 537, 540, 682
HaeII RGCGCY 1 cut(s) 565
HaeIII GGCC 5 cut(s) 8, 376, 648, 654, 684
HhaI GCGC 2 cut(s) 184, 564
Hin1I GRCGYC 1 cut(s) 562
Hin1II CATG 2 cut(s) 61, 209
Hin6I GCGC 2 cut(s) 182, 562
HinP1I GCGC 2 cut(s) 182, 562
HindIII AAGCTT 1 cut(s) 723
HinfI GANTC 1 cut(s) 322
HphI GGTGA 6 cut(s) 21, 49, 160, 208, 350, 574
Hpy166II GTNNAC 1 cut(s) 672
Hpy188I TCNGA 2 cut(s) 112, 301
Hpy188III TCNNGA 5 cut(s) 206, 319, 437, 458, 718
Hpy8I GTNNAC 1 cut(s) 672
HpyAV CCTTC 1 cut(s) 443
HpyCH4III ACNGT 4 cut(s) 77, 89, 135, 226
HpyCH4IV ACGT 2 cut(s) 146, 622
HpyCH4V TGCA 2 cut(s) 4, 511
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 505, 514, 545
HpySE526I ACGT 2 cut(s) 146, 622
Hsp92I GRCGYC 1 cut(s) 562
Hsp92II CATG 2 cut(s) 61, 209
HspAI GCGC 2 cut(s) 182, 562
KasI GGCGCC 1 cut(s) 561
Kpn2I TCCGGA 1 cut(s) 436
KpnI GGTACC 1 cut(s) 158
KroI GCCGGC 1 cut(s) 564
KroNI GCCGGC 1 cut(s) 566
KspI CCGCGG 1 cut(s) 537
Kzo9I GATC 4 cut(s) 118, 424, 454, 693
Lsp1109I GCAGC 2 cut(s) 377, 495
LweI GCATC 2 cut(s) 82, 611
MaeI CTAG 3 cut(s) 129, 597, 704
MaeII ACGT 2 cut(s) 146, 622
MaeIII GTNAC 4 cut(s) 37, 166, 196, 637
MalI GATC 4 cut(s) 120, 426, 456, 695
MbiI CCGCTC 1 cut(s) 618
MboI GATC 4 cut(s) 118, 424, 454, 693
MboII GAAGA 2 cut(s) 230, 314
MhlI GDGCHC 2 cut(s) 255, 550
MluCI AATT 1 cut(s) 22
Mly113I GGCGCC 1 cut(s) 562
MmeI TCCRAC 4 cut(s) 90, 96, 279, 385
MnlI CCTC 7 cut(s) 37, 145, 226, 366, 552, 568, 665
MroI TCCGGA 1 cut(s) 436
MroNI GCCGGC 1 cut(s) 564
MspA1I CMGCKG 1 cut(s) 536
MspR9I CCNGG 6 cut(s) 250, 269, 362, 593, 651, 698
MvaI CCWGG 1 cut(s) 698
MvnI CGCG 1 cut(s) 536
MwoI GCNNNNNNNGC 4 cut(s) 101, 505, 514, 545
NaeI GCCGGC 1 cut(s) 566
NarI GGCGCC 1 cut(s) 562
NciI CCSGG 5 cut(s) 250, 269, 362, 593, 651
NdeII GATC 4 cut(s) 118, 424, 454, 693
NgoMIV GCCGGC 1 cut(s) 564
NlaIII CATG 2 cut(s) 61, 209
NlaIV GGNNCC 7 cut(s) 156, 254, 331, 366, 377, 563, 649
NmeAIII GCCGAG 1 cut(s) 472
NmuCI GTSAC 3 cut(s) 37, 166, 196
PaeR7I CTCGAG 1 cut(s) 543
PagI TCATGA 1 cut(s) 205
PdiI GCCGGC 1 cut(s) 566
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 5 cut(s) 392, 510, 538, 541, 683
PluTI GGCGCC 1 cut(s) 565
Ppu21I YACGTR 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 696
PspEI GGTNACC 2 cut(s) 37, 196
PspGI CCWGG 1 cut(s) 696
PspN4I GGNNCC 7 cut(s) 156, 254, 331, 366, 377, 563, 649
PspPI GGNCC 4 cut(s) 329, 375, 553, 647
PspXI VCTCGAGB 1 cut(s) 543
PsrI GAACNNNNNNTAC 2 cut(s) 616, 648
RsaI GTAC 3 cut(s) 156, 273, 702
RsaNI GTAC 3 cut(s) 155, 272, 701
Rsr2I CGGWCCG 1 cut(s) 553
RsrII CGGWCCG 1 cut(s) 553
SacII CCGCGG 1 cut(s) 537
SatI GCNGC 5 cut(s) 391, 509, 537, 540, 682
Sau3AI GATC 4 cut(s) 118, 424, 454, 693
Sau96I GGNCC 4 cut(s) 329, 375, 553, 647
ScrFI CCNGG 6 cut(s) 250, 269, 362, 593, 651, 698
SduI GDGCHC 2 cut(s) 255, 550
SfaNI GCATC 2 cut(s) 82, 611
SfoI GGCGCC 1 cut(s) 563
Sfr274I CTCGAG 1 cut(s) 543
Sfr303I CCGCGG 1 cut(s) 537
SgrAI CRCCGGYG 1 cut(s) 31
SgrBI CCGCGG 1 cut(s) 537
SinI GGWCC 2 cut(s) 329, 553
SlaI CTCGAG 1 cut(s) 543
SmlI CTYRAG 2 cut(s) 311, 543
SmoI CTYRAG 2 cut(s) 311, 543
SpeI ACTAGT 1 cut(s) 703
Sse9I AATT 1 cut(s) 22
SsiI CCGC 8 cut(s) 35, 393, 490, 534, 536, 539, 618, 681
SspDI GGCGCC 1 cut(s) 561
SspMI CTAG 3 cut(s) 129, 597, 704
StyD4I CCNGG 6 cut(s) 248, 267, 360, 591, 649, 696
TaaI ACNGT 4 cut(s) 77, 89, 135, 226
TaiI ACGT 2 cut(s) 149, 625
TaqI TCGA 2 cut(s) 320, 544
TaqII GACCGA 1 cut(s) 225
TasI AATT 1 cut(s) 22
TauI GCSGC 3 cut(s) 539, 542, 684
TfiI GAWTC 1 cut(s) 322
TseFI GTSAC 3 cut(s) 37, 166, 196
TseI GCWGC 2 cut(s) 390, 508
Tsp45I GTSAC 3 cut(s) 37, 166, 196
TspDTI ATGAA 2 cut(s) 266, 540
TspGWI ACGGA 3 cut(s) 435, 625, 689
VpaK11BI GGWCC 2 cut(s) 329, 553
XapI RAATTY 1 cut(s) 22
XhoI CTCGAG 1 cut(s) 543
XmiI GTMKAC 1 cut(s) 671
XspI CTAG 3 cut(s) 129, 597, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.