Rmu_sc0006822.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006822.1
OG0000633
Physical Location & Seq
Reverse (-)
25468 .. 25809
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006822.1_g000011.1.cds

Sequence Viewer

Length: 342 bp
atggtcgagccggaagaagcggcaggtgcaagcaagaatgttgctcgggcattagtattcaccctcgacacttcggcaccaaaggcaccgagcaccgggattgaaacacacggcctgggaactttggacccactaggagcaaaccacccaccagtcgccccggaccctctggcctcggcttcagagctggaaggcatgctagcggagatcgtagccttacgtgagcaaagcaggattgacagggaacaacaaaggatcgacagagagaccaacctcctatcacaacagagactacaagagttagaagatgagaacaccgcgctagcttgggcgttggactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.17

Weight (kDa)

4.45

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 14
Acc36I ACCTGC 1 cut(s) 14
AccB1I GGYRCC 2 cut(s) 76, 85
AccII CGCG 1 cut(s) 320
AciI CCGC 3 cut(s) 20, 203, 318
AclWI GGATC 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 1 cut(s) 104
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 2 cut(s) 187, 326
AluI AGCT 2 cut(s) 187, 326
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 2 cut(s) 260, 283
AlwI GGATC 1 cut(s) 263
Ama87I CYCGRG 1 cut(s) 45
AoxI GGCC 2 cut(s) 112, 171
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 2 cut(s) 127, 163
AsuC2I CCSGG 2 cut(s) 97, 161
AsuHPI GGTGA 1 cut(s) 52
AsuNHI GCTAGC 2 cut(s) 199, 322
AvaI CYCGRG 1 cut(s) 45
AvaII GGWCC 2 cut(s) 127, 163
BanI GGYRCC 2 cut(s) 76, 85
Bbv12I GWGCWC 1 cut(s) 95
BceAI ACGGC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 116
BcnI CCSGG 2 cut(s) 97, 161
BcoDI GTCTC 2 cut(s) 260, 283
BfaI CTAG 3 cut(s) 134, 200, 323
BfuAI ACCTGC 1 cut(s) 14
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 3 cut(s) 97, 116, 161
Bme18I GGWCC 2 cut(s) 127, 163
BmeT110I CYCGRG 1 cut(s) 45
BmgT120I GGNCC 2 cut(s) 127, 163
BmiI GGNNCC 4 cut(s) 78, 87, 129, 165
BmrFI CCNGG 3 cut(s) 97, 116, 161
BmtI GCTAGC 2 cut(s) 203, 326
BpuMI CCSGG 2 cut(s) 97, 161
BsaAI YACGTR 1 cut(s) 221
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 3 cut(s) 115, 159, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 152
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 3 cut(s) 115, 159, 174
BseLI CCNNNNNNNGG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 152
Bsh1236I CGCG 1 cut(s) 320
BshFI GGCC 2 cut(s) 114, 173
BshNI GGYRCC 2 cut(s) 76, 85
BsiHKAI GWGCWC 1 cut(s) 95
BsiHKCI CYCGRG 1 cut(s) 45
BsiSI CCGG 3 cut(s) 11, 96, 161
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 2 cut(s) 260, 283
BsnI GGCC 2 cut(s) 114, 173
Bso31I GGTCTC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 2 cut(s) 207, 255
BspACI CCGC 3 cut(s) 20, 203, 318
BspANI GGCC 2 cut(s) 114, 173
BspFNI CGCG 1 cut(s) 320
BspLI GGNNCC 4 cut(s) 78, 87, 129, 165
BspMI ACCTGC 1 cut(s) 14
BspOI GCTAGC 2 cut(s) 203, 326
BspPI GGATC 1 cut(s) 263
BspT107I GGYRCC 2 cut(s) 76, 85
BspTNI GGTCTC 1 cut(s) 260
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 3 cut(s) 115, 159, 174
BssMI GATC 2 cut(s) 207, 255
Bst2UI CCWGG 1 cut(s) 116
BstBAI YACGTR 1 cut(s) 221
BstC8I GCNNGC 4 cut(s) 31, 197, 201, 324
BstFNI CGCG 1 cut(s) 320
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 2 cut(s) 210, 258
BstMAI GTCTC 2 cut(s) 260, 283
BstMBI GATC 2 cut(s) 207, 255
BstMWI GCNNNNNNNGC 2 cut(s) 26, 83
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 3 cut(s) 95, 114, 159
BstUI CGCG 1 cut(s) 320
BsuRI GGCC 2 cut(s) 114, 173
BveI ACCTGC 1 cut(s) 14
Cac8I GCNNGC 4 cut(s) 31, 197, 201, 324
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 127, 163
CviAII CATG 1 cut(s) 196
CviJI RGCY 7 cut(s) 10, 114, 173, 179, 187, 215, 326
CviKI_1 RGCY 7 cut(s) 10, 114, 173, 179, 187, 215, 326
DpnI GATC 2 cut(s) 209, 257
DpnII GATC 2 cut(s) 207, 255
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 2 cut(s) 127, 163
Eco57I CTGAAG 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 199
FaiI YATR 1 cut(s) 197
FatI CATG 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 3 cut(s) 134, 200, 323
GlaI GCGC 1 cut(s) 321
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 2 cut(s) 114, 173
HapII CCGG 3 cut(s) 11, 96, 161
HhaI GCGC 1 cut(s) 322
Hin1II CATG 1 cut(s) 199
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HpaII CCGG 3 cut(s) 11, 96, 161
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 83
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 1 cut(s) 199
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 2 cut(s) 207, 255
LmnI GCTCC 1 cut(s) 137
MaeI CTAG 3 cut(s) 134, 200, 323
MaeII ACGT 1 cut(s) 220
MalI GATC 2 cut(s) 209, 257
MboI GATC 2 cut(s) 207, 255
MboII GAAGA 2 cut(s) 26, 317
MhlI GDGCHC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 4 cut(s) 74, 177, 184, 284
MspI CCGG 3 cut(s) 11, 96, 161
MspR9I CCNGG 3 cut(s) 97, 116, 161
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 320
MwoI GCNNNNNNNGC 2 cut(s) 26, 83
NciI CCSGG 2 cut(s) 97, 161
NdeII GATC 2 cut(s) 207, 255
NheI GCTAGC 2 cut(s) 199, 322
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 4 cut(s) 78, 87, 129, 165
NmeAIII GCCGAG 1 cut(s) 155
NspI RCATGY 1 cut(s) 199
PaeI GCATGC 1 cut(s) 199
PaqCI CACCTGC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 22
Ppu21I YACGTR 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 4 cut(s) 78, 87, 129, 165
PspPI GGNCC 2 cut(s) 127, 163
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 2 cut(s) 207, 255
Sau96I GGNCC 2 cut(s) 127, 163
ScrFI CCNGG 3 cut(s) 97, 116, 161
SduI GDGCHC 1 cut(s) 95
SetI ASST 5 cut(s) 28, 189, 223, 276, 328
SinI GGWCC 2 cut(s) 127, 163
SphI GCATGC 1 cut(s) 199
SsiI CCGC 3 cut(s) 20, 203, 318
SspMI CTAG 3 cut(s) 134, 200, 323
StyD4I CCNGG 3 cut(s) 95, 114, 159
TaiI ACGT 1 cut(s) 223
TaqI TCGA 3 cut(s) 6, 66, 258
TauI GCSGC 1 cut(s) 23
VpaK11BI GGWCC 2 cut(s) 127, 163
XceI RCATGY 1 cut(s) 199
XspI CTAG 3 cut(s) 134, 200, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.