Rmu_sc0014844.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014844.1
OG0000633
Physical Location & Seq
Reverse (-)
32345 .. 33070
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014844.1_g000011.1.cds

Sequence Viewer

Length: 726 bp
atgtcttgctcgggccgtgccgggccaggccaatgggccaatattcttaggcccagcccgacccgttattctatcgtgctcgggtcgtgccgggccactaacgggcttgggccgtaccgggccccttttaagcttgccgggcatgtgccgtgctggtgcgtagtggcccgtttgccacctctaggtagaagtgtcacccgggcactaatattctcccctggtacttcgtcagcagggacaccaagtgtcagaggagaggcgcatggtctcgaattcttgaaccagcagaacgcagatgacccactgggcatccaagaccaagtggcctcggtatcagagttggagtctatgcgagcagagatcgcagccttccgggaacaagccaggatcgatggggaacaacaaagaaccgatagagaaacaaacctcctttcgcaacagagactgcaggagctggaagatgaaaacactgcgctggcccgagcactggacagaaggcaccagcataacgaggcactcacccaagccttaactagggcatctcaggtagcaacagatgtaaatgctaccccggtaacaggaagcaccagcctcgctccaacccggtcaacggaaagtggtcaccgaatgatccaggtaccggtagacttgttcctggaaagcttgaggcatttgccaccaccaccattaccacagccagctcaaagtgaccccaactgtaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

26.11

Weight (kDa)

6.59

Isoelectric Point (pI)

51.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 637
AccB1I GGYRCC 2 cut(s) 498, 637
AccI GTMKAC 1 cut(s) 645
AclWI GGATC 2 cut(s) 395, 625
AcsI RAATTY 1 cut(s) 272
AdeI CACNNNGTG 1 cut(s) 245
AfaI GTAC 3 cut(s) 116, 223, 639
AfiI CCNNNNNNNGG 7 cut(s) 102, 182, 487, 534, 578, 610, 640
AgeI ACCGGT 1 cut(s) 640
AgsI TTSAA 1 cut(s) 280
AjnI CCWGG 5 cut(s) 25, 217, 383, 633, 654
AluBI AGCT 4 cut(s) 133, 454, 663, 701
AluI AGCT 4 cut(s) 133, 454, 663, 701
Alw21I GWGCWC 2 cut(s) 81, 487
Alw26I GTCTC 2 cut(s) 272, 436
AlwI GGATC 2 cut(s) 395, 625
AlwNI CAGNNNCTG 2 cut(s) 445, 454
Ama87I CYCGRG 4 cut(s) 10, 80, 198, 480
ApaI GGGCCC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 1 cut(s) 272
AsiGI ACCGGT 1 cut(s) 640
Asp718I GGTACC 1 cut(s) 637
AspLEI GCGC 2 cut(s) 262, 475
AsuC2I CCSGG 9 cut(s) 22, 92, 119, 139, 199, 200, 374, 572, 604
AsuHPI GGTGA 3 cut(s) 187, 511, 614
AvaI CYCGRG 4 cut(s) 10, 80, 198, 480
BaeGI GKGCMC 2 cut(s) 124, 205
BanI GGYRCC 2 cut(s) 498, 637
BanII GRGCYC 1 cut(s) 124
Bbv12I GWGCWC 2 cut(s) 81, 487
BbvI GCAGC 1 cut(s) 377
BccI CCATC 1 cut(s) 386
BceAI ACGGC 2 cut(s) 97, 133
BcgI CGANNNNNNTGC 2 cut(s) 574, 608
BciT130I CCWGG 5 cut(s) 27, 219, 385, 635, 656
BcnI CCSGG 9 cut(s) 22, 92, 119, 139, 199, 200, 374, 572, 604
BcoDI GTCTC 2 cut(s) 272, 436
BfaI CTAG 2 cut(s) 182, 534
BfmI CTRYAG 1 cut(s) 446
BisI GCNGC 1 cut(s) 366
BlsI GCNGC 1 cut(s) 367
BmeT110I CYCGRG 4 cut(s) 10, 80, 198, 480
BmiI GGNNCC 4 cut(s) 122, 123, 500, 639
BmrI ACTGGG 1 cut(s) 314
BmsI GCATC 2 cut(s) 318, 548
BmuI ACTGGG 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 685
BpuMI CCSGG 9 cut(s) 22, 92, 119, 139, 199, 200, 374, 572, 604
Bsa29I ATCGAT 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 4 cut(s) 198, 217, 327, 570
BsaWI WCCGGW 1 cut(s) 640
Bsc4I CCNNNNNNNGG 7 cut(s) 102, 182, 487, 534, 578, 610, 640
Bse118I RCCGGY 1 cut(s) 640
Bse1I ACTGG 2 cut(s) 309, 492
BseBI CCWGG 5 cut(s) 27, 219, 385, 635, 656
BseCI ATCGAT 1 cut(s) 390
BseDI CCNNGG 4 cut(s) 198, 217, 327, 570
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 7 cut(s) 102, 182, 487, 534, 578, 610, 640
BseMII CTCAG 1 cut(s) 557
BseNI ACTGG 2 cut(s) 309, 492
BseRI GAGGAG 1 cut(s) 267
BseSI GKGCMC 2 cut(s) 124, 205
BseXI GCAGC 1 cut(s) 377
BseYI CCCAGC 1 cut(s) 53
BshNI GGYRCC 2 cut(s) 498, 637
BshTI ACCGGT 1 cut(s) 640
BshVI ATCGAT 1 cut(s) 390
BsiHKAI GWGCWC 2 cut(s) 81, 487
BsiHKCI CYCGRG 4 cut(s) 10, 80, 198, 480
BsiSI CCGG 9 cut(s) 21, 91, 118, 138, 199, 373, 572, 604, 641
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 7 cut(s) 102, 182, 487, 534, 578, 610, 640
BsmAI GTCTC 2 cut(s) 272, 436
BsmFI GGGAC 1 cut(s) 250
Bso31I GGTCTC 1 cut(s) 272
BsoBI CYCGRG 4 cut(s) 10, 80, 198, 480
Bsp120I GGGCCC 1 cut(s) 120
Bsp1286I GDGCHC 4 cut(s) 81, 124, 205, 487
Bsp143I GATC 3 cut(s) 360, 387, 630
BspCNI CTCAG 1 cut(s) 556
BspDI ATCGAT 1 cut(s) 390
BspLI GGNNCC 4 cut(s) 122, 123, 500, 639
BspMAI CTGCAG 1 cut(s) 450
BspPI GGATC 2 cut(s) 395, 625
BspT107I GGYRCC 2 cut(s) 498, 637
BspTNI GGTCTC 1 cut(s) 272
BsrFI RCCGGY 1 cut(s) 640
BsrI ACTGG 2 cut(s) 309, 492
BssAI RCCGGY 1 cut(s) 640
BssECI CCNNGG 4 cut(s) 198, 217, 327, 570
BssMI GATC 3 cut(s) 360, 387, 630
Bst2UI CCWGG 5 cut(s) 27, 219, 385, 635, 656
Bst4CI ACNGT 1 cut(s) 719
BstC8I GCNNGC 4 cut(s) 135, 354, 477, 699
BstDEI CTNAG 2 cut(s) 47, 543
BstEII GGTNACC 1 cut(s) 620
BstENI CCTNNNNNAGG 1 cut(s) 532
BstF5I GGATG 1 cut(s) 309
BstHHI GCGC 2 cut(s) 262, 475
BstKTI GATC 3 cut(s) 363, 390, 633
BstMAI GTCTC 2 cut(s) 272, 436
BstMBI GATC 3 cut(s) 360, 387, 630
BstMWI GCNNNNNNNGC 2 cut(s) 139, 362
BstNI CCWGG 5 cut(s) 27, 219, 385, 635, 656
BstNSI RCATGY 1 cut(s) 146
BstPI GGTNACC 1 cut(s) 620
BstSFI CTRYAG 1 cut(s) 446
BstSLI GKGCMC 2 cut(s) 124, 205
BstV1I GCAGC 1 cut(s) 377
BstXI CCANNNNNNTGG 1 cut(s) 33
Bsu15I ATCGAT 1 cut(s) 390
BsuTUI ATCGAT 1 cut(s) 390
BtsCI GGATG 1 cut(s) 309
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 3 cut(s) 302, 468, 485
Cac8I GCNNGC 4 cut(s) 135, 354, 477, 699
CaiI CAGNNNCTG 2 cut(s) 445, 454
CfoI GCGC 2 cut(s) 262, 475
Cfr10I RCCGGY 1 cut(s) 640
Cfr9I CCCGGG 1 cut(s) 198
ClaI ATCGAT 1 cut(s) 390
Csp6I GTAC 3 cut(s) 115, 222, 638
CspAI ACCGGT 1 cut(s) 640
CviAII CATG 2 cut(s) 143, 263
CviQI GTAC 3 cut(s) 115, 222, 638
DdeI CTNAG 2 cut(s) 47, 543
DpnI GATC 3 cut(s) 362, 389, 632
DpnII GATC 3 cut(s) 360, 387, 630
DraIII CACNNNGTG 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 272
Eco88I CYCGRG 4 cut(s) 10, 80, 198, 480
Eco91I GGTNACC 1 cut(s) 620
EcoNI CCTNNNNNAGG 1 cut(s) 532
EcoO109I RGGNCCY 1 cut(s) 121
EcoO65I GGTNACC 1 cut(s) 620
EcoRI GAATTC 1 cut(s) 272
EcoRII CCWGG 5 cut(s) 25, 217, 383, 633, 654
EcoT38I GRGCYC 1 cut(s) 124
FaeI CATG 2 cut(s) 146, 266
FaiI YATR 4 cut(s) 144, 264, 350, 507
FaqI GGGAC 1 cut(s) 250
FatI CATG 2 cut(s) 142, 262
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 1 cut(s) 366
FokI GGATG 1 cut(s) 296
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 366
FspBI CTAG 2 cut(s) 182, 534
GlaI GCGC 2 cut(s) 261, 474
GluI GCNGC 1 cut(s) 366
GsaI CCCAGC 1 cut(s) 57
HapII CCGG 9 cut(s) 21, 91, 118, 138, 199, 373, 572, 604, 641
HhaI GCGC 2 cut(s) 262, 475
Hin1II CATG 2 cut(s) 146, 266
Hin6I GCGC 2 cut(s) 260, 473
HinP1I GCGC 2 cut(s) 260, 473
HincII GTYRAC 1 cut(s) 609
HindII GTYRAC 1 cut(s) 609
HindIII AAGCTT 2 cut(s) 131, 661
HinfI GANTC 1 cut(s) 344
HpaII CCGG 9 cut(s) 21, 91, 118, 138, 199, 373, 572, 604, 641
HphI GGTGA 3 cut(s) 187, 511, 614
Hpy166II GTNNAC 2 cut(s) 609, 646
Hpy188I TCNGA 2 cut(s) 251, 337
Hpy188III TCNNGA 2 cut(s) 269, 277
Hpy8I GTNNAC 2 cut(s) 609, 646
HpyAV CCTTC 2 cut(s) 379, 489
HpyCH4III ACNGT 1 cut(s) 719
HpyCH4V TGCA 1 cut(s) 448
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 362
HpyF3I CTNAG 2 cut(s) 47, 543
Hsp92II CATG 2 cut(s) 146, 266
HspAI GCGC 2 cut(s) 260, 473
KpnI GGTACC 1 cut(s) 641
Kzo9I GATC 3 cut(s) 360, 387, 630
LmnI GCTCC 2 cut(s) 451, 601
Lsp1109I GCAGC 1 cut(s) 377
LweI GCATC 2 cut(s) 318, 548
MaeI CTAG 2 cut(s) 182, 534
MaeIII GTNAC 5 cut(s) 193, 574, 620, 707, 719
MalI GATC 3 cut(s) 362, 389, 632
MboI GATC 3 cut(s) 360, 387, 630
MboII GAAGA 1 cut(s) 470
MhlI GDGCHC 4 cut(s) 81, 124, 205, 487
MluCI AATT 1 cut(s) 272
MlyI GAGTC 1 cut(s) 353
MmeI TCCRAC 2 cut(s) 321, 623
MnlI CCTC 8 cut(s) 189, 245, 250, 337, 437, 505, 602, 660
MseI TTAA 2 cut(s) 129, 530
MspI CCGG 9 cut(s) 21, 91, 118, 138, 199, 373, 572, 604, 641
MvaI CCWGG 5 cut(s) 27, 219, 385, 635, 656
MwoI GCNNNNNNNGC 2 cut(s) 139, 362
NciI CCSGG 9 cut(s) 22, 92, 119, 139, 199, 200, 374, 572, 604
NdeII GATC 3 cut(s) 360, 387, 630
NlaIII CATG 2 cut(s) 146, 266
NlaIV GGNNCC 4 cut(s) 122, 123, 500, 639
NmuCI GTSAC 3 cut(s) 193, 620, 707
NspI RCATGY 1 cut(s) 146
PfoI TCCNGGA 2 cut(s) 372, 654
PinAI ACCGGT 1 cut(s) 640
PkrI GCNGC 1 cut(s) 367
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
Psp6I CCWGG 5 cut(s) 25, 217, 383, 633, 654
PspEI GGTNACC 1 cut(s) 620
PspFI CCCAGC 1 cut(s) 53
PspGI CCWGG 5 cut(s) 25, 217, 383, 633, 654
PspN4I GGNNCC 4 cut(s) 122, 123, 500, 639
PspOMI GGGCCC 1 cut(s) 120
PstI CTGCAG 1 cut(s) 450
PstNI CAGNNNCTG 2 cut(s) 445, 454
RsaI GTAC 3 cut(s) 116, 223, 639
RsaNI GTAC 3 cut(s) 115, 222, 638
SaqAI TTAA 2 cut(s) 129, 530
SatI GCNGC 1 cut(s) 366
Sau3AI GATC 3 cut(s) 360, 387, 630
SchI GAGTC 1 cut(s) 353
SduI GDGCHC 4 cut(s) 81, 124, 205, 487
SetI ASST 9 cut(s) 135, 181, 187, 429, 456, 549, 639, 665, 703
SfaNI GCATC 2 cut(s) 318, 548
SfcI CTRYAG 1 cut(s) 446
SmaI CCCGGG 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 664
SmoI CTYRAG 1 cut(s) 664
Sse9I AATT 1 cut(s) 272
SspI AATATT 2 cut(s) 43, 210
SspMI CTAG 2 cut(s) 182, 534
TaaI ACNGT 1 cut(s) 719
TaqI TCGA 2 cut(s) 270, 390
TasI AATT 1 cut(s) 272
Tru1I TTAA 2 cut(s) 129, 530
Tru9I TTAA 2 cut(s) 129, 530
TscAI CASTG 3 cut(s) 309, 475, 492
TseFI GTSAC 3 cut(s) 193, 620, 707
TseI GCWGC 1 cut(s) 365
Tsp45I GTSAC 3 cut(s) 193, 620, 707
TspDTI ATGAA 1 cut(s) 477
TspGWI ACGGA 1 cut(s) 626
TspMI CCCGGG 1 cut(s) 198
TspRI CASTG 3 cut(s) 309, 475, 492
XagI CCTNNNNNAGG 1 cut(s) 532
XapI RAATTY 1 cut(s) 272
XceI RCATGY 1 cut(s) 146
XmaI CCCGGG 1 cut(s) 198
XmiI GTMKAC 1 cut(s) 645
XspI CTAG 2 cut(s) 182, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.