Rmu_sc0002868.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002868.1
OG0000633
Physical Location & Seq
Reverse (-)
50276 .. 51476
1201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002868.1_g000020.1.cds

Sequence Viewer

Length: 1014 bp
atgggccgggttcacaccccaccatggcgagcttcacataagatgccaccccgggcacccaaggcccggggcaaggccagcacagcccatctattttacaaatacaagattgatatggcatcagaagaacctgtgtcccacatcgaggataggggaaactcccttcccacgcttgaatataaagattatagcacaaccacctttgacagaaacattggcgctccagataggggctccttgggggtaccagatatgagtgagccagaagtgacaggagaggggagaagtgccgcccgggcacttatgttctcccccggaacttcgtcagcagaggcaccagctgttcaggaggaaatccatagcctcggatccttggacccgatagtcccggatcaggtgactccggtatcggagttagagtctatgcgagctgagatcgctgccttcagggagcagtccaggatcgatcaggaacaacggagtaccgatagggaaacaaaccgcctcacgcaacagagaatgcaggatttggaagatgaaaacacggcgctggcccgagcactagacaggaggcaccagcacaacgaggcacttactcaggccctggctagagcatccccgctagcagacttgaacactgccccgataacaggaaacaccaacaccgcaccagcacctcctacggagggcagccagaggttaatccaggtaccggtagacttattcccgaaaagcttgaggcatctaccaccaccaccgttaccacagccagttcacggtatcatgccggtacccgacgcaaacacggcattactcgcacaaatgagcaactccttgcatgccctgcaggcaagggtacaggccacagaaaatagagacacctggagagctatgaacagttacgaggaccgcccggggcctttcacccaacaggttaggggagccattagagcgaatacatcgaaaccactgaaaattgactatacgggagttggagatccctaccaacattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

37.15

Weight (kDa)

6.14

Isoelectric Point (pI)

53.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 383
Acc65I GGTACC 3 cut(s) 244, 709, 790
AccB1I GGYRCC 6 cut(s) 55, 244, 334, 573, 709, 790
AccI GTMKAC 1 cut(s) 717
AciI CCGC 5 cut(s) 291, 502, 620, 666, 910
AclWI GGATC 5 cut(s) 363, 376, 399, 470, 992
AcuI CTGAAG 1 cut(s) 430
AfaI GTAC 5 cut(s) 246, 484, 711, 792, 858
AgeI ACCGGT 1 cut(s) 712
AgsI TTSAA 2 cut(s) 176, 634
AjnI CCWGG 4 cut(s) 458, 603, 705, 881
AluBI AGCT 5 cut(s) 32, 341, 431, 735, 890
AluI AGCT 5 cut(s) 32, 341, 431, 735, 890
Alw21I GWGCWC 1 cut(s) 562
Alw26I GTCTC 1 cut(s) 870
AlwI GGATC 5 cut(s) 363, 376, 399, 470, 992
AlwNI CAGNNNCTG 1 cut(s) 604
Ama87I CYCGRG 5 cut(s) 51, 66, 294, 555, 913
AoxI GGCC 7 cut(s) 4, 63, 75, 552, 600, 861, 917
ApeKI GCWGC 2 cut(s) 440, 690
AsiGI ACCGGT 1 cut(s) 712
Asp718I GGTACC 3 cut(s) 244, 709, 790
AspLEI GCGC 2 cut(s) 221, 550
AspS9I GGNCC 7 cut(s) 4, 64, 376, 553, 601, 907, 917
AsuHPI GGTGA 2 cut(s) 409, 916
AsuNHI GCTAGC 1 cut(s) 622
AvaI CYCGRG 5 cut(s) 51, 66, 294, 555, 913
AvaII GGWCC 2 cut(s) 376, 907
BaeGI GKGCMC 2 cut(s) 58, 301
BaeI ACNNNNGTAYC 2 cut(s) 390, 423
BamHI GGATCC 1 cut(s) 368
BanI GGYRCC 6 cut(s) 55, 244, 334, 573, 709, 790
BanII GRGCYC 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 562
BbvI GCAGC 2 cut(s) 427, 702
BccI CCATC 1 cut(s) 96
BceAI ACGGC 2 cut(s) 561, 822
BciT130I CCWGG 4 cut(s) 460, 605, 707, 883
BcoDI GTCTC 1 cut(s) 870
BfaI CTAG 3 cut(s) 563, 609, 623
BfmI CTRYAG 1 cut(s) 845
BfoI RGCGCY 2 cut(s) 222, 551
BglI GCCNNNNNGGC 2 cut(s) 296, 848
BisI GCNGC 3 cut(s) 291, 441, 691
BlsI GCNGC 3 cut(s) 292, 442, 692
Bme18I GGWCC 2 cut(s) 376, 907
BmeT110I CYCGRG 5 cut(s) 51, 66, 294, 555, 913
BmgT120I GGNCC 7 cut(s) 4, 64, 376, 553, 601, 907, 917
BmsI GCATC 4 cut(s) 33, 128, 623, 751
BmtI GCTAGC 1 cut(s) 626
BpmI CTGGAG 2 cut(s) 207, 904
BpuEI CTTGAG 1 cut(s) 757
Bsa29I ATCGAT 1 cut(s) 465
BsaWI WCCGGW 2 cut(s) 403, 712
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bse118I RCCGGY 2 cut(s) 712, 787
Bse1I ACTGG 1 cut(s) 770
BseBI CCWGG 4 cut(s) 460, 605, 707, 883
BseCI ATCGAT 1 cut(s) 465
BseGI GGATG 1 cut(s) 614
BseMII CTCAG 2 cut(s) 423, 611
BseNI ACTGG 1 cut(s) 770
BseSI GKGCMC 2 cut(s) 58, 301
BseXI GCAGC 2 cut(s) 427, 702
BshFI GGCC 7 cut(s) 6, 65, 77, 554, 602, 863, 919
BshNI GGYRCC 6 cut(s) 55, 244, 334, 573, 709, 790
BshTI ACCGGT 1 cut(s) 712
BshVI ATCGAT 1 cut(s) 465
BsiHKAI GWGCWC 1 cut(s) 562
BsiHKCI CYCGRG 5 cut(s) 51, 66, 294, 555, 913
BslFI GGGAC 2 cut(s) 121, 371
BsmAI GTCTC 1 cut(s) 870
BsmFI GGGAC 2 cut(s) 121, 371
BsmI GAATGC 1 cut(s) 525
BsnI GGCC 7 cut(s) 6, 65, 77, 554, 602, 863, 919
BsoBI CYCGRG 5 cut(s) 51, 66, 294, 555, 913
Bsp1286I GDGCHC 4 cut(s) 58, 236, 301, 562
Bsp143I GATC 6 cut(s) 368, 391, 435, 462, 466, 997
Bsp19I CCATGG 1 cut(s) 23
BspACI CCGC 5 cut(s) 291, 502, 620, 666, 910
BspANI GGCC 7 cut(s) 6, 65, 77, 554, 602, 863, 919
BspCNI CTCAG 2 cut(s) 424, 610
BspDI ATCGAT 1 cut(s) 465
BspMAI CTGCAG 1 cut(s) 849
BspOI GCTAGC 1 cut(s) 626
BspPI GGATC 5 cut(s) 363, 376, 399, 470, 992
BspT107I GGYRCC 6 cut(s) 55, 244, 334, 573, 709, 790
BsrFI RCCGGY 2 cut(s) 712, 787
BsrI ACTGG 1 cut(s) 770
BssAI RCCGGY 2 cut(s) 712, 787
BssMI GATC 6 cut(s) 368, 391, 435, 462, 466, 997
BssT1I CCWWGG 4 cut(s) 23, 60, 237, 372
Bst2UI CCWGG 4 cut(s) 460, 605, 707, 883
Bst4CI ACNGT 3 cut(s) 759, 779, 899
BstAPI GCANNNNNTGC 1 cut(s) 844
BstC8I GCNNGC 7 cut(s) 30, 79, 429, 552, 624, 840, 849
BstDEI CTNAG 2 cut(s) 432, 597
BstDSI CCRYGG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 614
BstH2I RGCGCY 2 cut(s) 222, 551
BstHHI GCGC 2 cut(s) 221, 550
BstKTI GATC 6 cut(s) 371, 394, 438, 465, 469, 1000
BstMAI GTCTC 1 cut(s) 870
BstMBI GATC 6 cut(s) 368, 391, 435, 462, 466, 997
BstNI CCWGG 4 cut(s) 460, 605, 707, 883
BstNSI RCATGY 1 cut(s) 842
BstSFI CTRYAG 1 cut(s) 845
BstSLI GKGCMC 2 cut(s) 58, 301
BstV1I GCAGC 2 cut(s) 427, 702
BstX2I RGATCY 2 cut(s) 368, 997
BstYI RGATCY 2 cut(s) 368, 997
Bsu15I ATCGAT 1 cut(s) 465
BsuRI GGCC 7 cut(s) 6, 65, 77, 554, 602, 863, 919
BsuTUI ATCGAT 1 cut(s) 465
BtgI CCRYGG 1 cut(s) 23
BtsCI GGATG 1 cut(s) 614
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 2 cut(s) 636, 968
Cac8I GCNNGC 7 cut(s) 30, 79, 429, 552, 624, 840, 849
CaiI CAGNNNCTG 1 cut(s) 604
CfoI GCGC 2 cut(s) 221, 550
Cfr10I RCCGGY 2 cut(s) 712, 787
Cfr13I GGNCC 7 cut(s) 4, 64, 376, 553, 601, 907, 917
Cfr9I CCCGGG 4 cut(s) 51, 66, 294, 913
ClaI ATCGAT 1 cut(s) 465
CseI GACGC 1 cut(s) 806
Csp6I GTAC 5 cut(s) 245, 483, 710, 791, 857
CspAI ACCGGT 1 cut(s) 712
CviAII CATG 3 cut(s) 24, 784, 839
CviQI GTAC 5 cut(s) 245, 483, 710, 791, 857
DdeI CTNAG 2 cut(s) 432, 597
DpnI GATC 6 cut(s) 370, 393, 437, 464, 468, 999
DpnII GATC 6 cut(s) 368, 391, 435, 462, 466, 997
DrdI GACNNNNNNGTC 1 cut(s) 383
DseDI GACNNNNNNGTC 1 cut(s) 383
Eco130I CCWWGG 4 cut(s) 23, 60, 237, 372
Eco24I GRGCYC 1 cut(s) 236
Eco47I GGWCC 2 cut(s) 376, 907
Eco57I CTGAAG 1 cut(s) 430
Eco88I CYCGRG 5 cut(s) 51, 66, 294, 555, 913
EcoO109I RGGNCCY 2 cut(s) 601, 917
EcoRII CCWGG 4 cut(s) 458, 603, 705, 881
EcoT14I CCWWGG 4 cut(s) 23, 60, 237, 372
EcoT38I GRGCYC 1 cut(s) 236
ErhI CCWWGG 4 cut(s) 23, 60, 237, 372
FaeI CATG 3 cut(s) 27, 787, 842
FaqI GGGAC 2 cut(s) 121, 371
FatI CATG 3 cut(s) 23, 783, 838
FauI CCCGC 1 cut(s) 627
FblI GTMKAC 1 cut(s) 717
Fnu4HI GCNGC 3 cut(s) 291, 441, 691
FokI GGATG 1 cut(s) 601
FriOI GRGCYC 1 cut(s) 236
Fsp4HI GCNGC 3 cut(s) 291, 441, 691
FspBI CTAG 3 cut(s) 563, 609, 623
GlaI GCGC 2 cut(s) 220, 549
GluI GCNGC 3 cut(s) 291, 441, 691
GsuI CTGGAG 2 cut(s) 207, 904
HaeII RGCGCY 2 cut(s) 222, 551
HaeIII GGCC 7 cut(s) 6, 65, 77, 554, 602, 863, 919
HgaI GACGC 1 cut(s) 806
HhaI GCGC 2 cut(s) 221, 550
Hin1II CATG 3 cut(s) 27, 787, 842
Hin6I GCGC 2 cut(s) 219, 548
HinP1I GCGC 2 cut(s) 219, 548
HindIII AAGCTT 1 cut(s) 733
HinfI GANTC 2 cut(s) 400, 419
HphI GGTGA 2 cut(s) 409, 916
Hpy166II GTNNAC 3 cut(s) 13, 718, 775
Hpy188I TCNGA 3 cut(s) 124, 368, 412
Hpy188III TCNNGA 4 cut(s) 224, 347, 470, 727
Hpy8I GTNNAC 3 cut(s) 13, 718, 775
Hpy99I CGWCG 1 cut(s) 800
HpyAV CCTTC 2 cut(s) 173, 454
HpyCH4III ACNGT 3 cut(s) 759, 779, 899
HpyCH4V TGCA 3 cut(s) 523, 838, 847
HpyF3I CTNAG 2 cut(s) 432, 597
Hsp92II CATG 3 cut(s) 27, 787, 842
HspAI GCGC 2 cut(s) 219, 548
KpnI GGTACC 3 cut(s) 248, 713, 794
Kzo9I GATC 6 cut(s) 368, 391, 435, 462, 466, 997
LmnI GCTCC 4 cut(s) 226, 239, 451, 941
Lsp1109I GCAGC 2 cut(s) 427, 702
LweI GCATC 4 cut(s) 33, 128, 623, 751
MaeI CTAG 3 cut(s) 563, 609, 623
MaeIII GTNAC 4 cut(s) 268, 397, 759, 899
MalI GATC 6 cut(s) 370, 393, 437, 464, 468, 999
MboI GATC 6 cut(s) 368, 391, 435, 462, 466, 997
MboII GAAGA 2 cut(s) 137, 545
MflI RGATCY 2 cut(s) 368, 997
MhlI GDGCHC 4 cut(s) 58, 236, 301, 562
MluCI AATT 1 cut(s) 975
MlyI GAGTC 2 cut(s) 394, 428
MmeI TCCRAC 1 cut(s) 973
MseI TTAA 2 cut(s) 701, 1012
MspA1I CMGCKG 1 cut(s) 341
Mva1269I GAATGC 1 cut(s) 525
MvaI CCWGG 4 cut(s) 460, 605, 707, 883
NcoI CCATGG 1 cut(s) 23
NdeII GATC 6 cut(s) 368, 391, 435, 462, 466, 997
NheI GCTAGC 1 cut(s) 622
NlaIII CATG 3 cut(s) 27, 787, 842
NmuCI GTSAC 2 cut(s) 268, 397
NspI RCATGY 1 cut(s) 842
PaeI GCATGC 1 cut(s) 842
PctI GAATGC 1 cut(s) 525
PfoI TCCNGGA 2 cut(s) 387, 458
PinAI ACCGGT 1 cut(s) 712
PkrI GCNGC 3 cut(s) 292, 442, 692
PleI GAGTC 2 cut(s) 394, 427
PpsI GAGTC 2 cut(s) 394, 427
Psp6I CCWGG 4 cut(s) 458, 603, 705, 881
PspGI CCWGG 4 cut(s) 458, 603, 705, 881
PspPI GGNCC 7 cut(s) 4, 64, 376, 553, 601, 907, 917
PstI CTGCAG 1 cut(s) 849
PstNI CAGNNNCTG 1 cut(s) 604
PsuI RGATCY 2 cut(s) 368, 997
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 5 cut(s) 246, 484, 711, 792, 858
RsaNI GTAC 5 cut(s) 245, 483, 710, 791, 857
SaqAI TTAA 2 cut(s) 701, 1012
SatI GCNGC 3 cut(s) 291, 441, 691
Sau3AI GATC 6 cut(s) 368, 391, 435, 462, 466, 997
Sau96I GGNCC 7 cut(s) 4, 64, 376, 553, 601, 907, 917
SbfI CCTGCAGG 1 cut(s) 849
SchI GAGTC 2 cut(s) 394, 428
SdaI CCTGCAGG 1 cut(s) 849
SduI GDGCHC 4 cut(s) 58, 236, 301, 562
SfaNI GCATC 4 cut(s) 33, 128, 623, 751
SfcI CTRYAG 1 cut(s) 845
SinI GGWCC 2 cut(s) 376, 907
SmaI CCCGGG 4 cut(s) 53, 68, 296, 915
SmlI CTYRAG 1 cut(s) 736
SmoI CTYRAG 1 cut(s) 736
SphI GCATGC 1 cut(s) 842
SrfI GCCCGGGC 1 cut(s) 296
Sse8387I CCTGCAGG 1 cut(s) 849
Sse9I AATT 1 cut(s) 975
SsiI CCGC 5 cut(s) 291, 502, 620, 666, 910
SspMI CTAG 3 cut(s) 563, 609, 623
StyI CCWWGG 4 cut(s) 23, 60, 237, 372
TaaI ACNGT 3 cut(s) 759, 779, 899
TaqI TCGA 3 cut(s) 144, 465, 962
TasI AATT 1 cut(s) 975
TauI GCSGC 1 cut(s) 293
Tru1I TTAA 2 cut(s) 701, 1012
Tru9I TTAA 2 cut(s) 701, 1012
TscAI CASTG 2 cut(s) 643, 975
TseFI GTSAC 2 cut(s) 268, 397
TseI GCWGC 2 cut(s) 440, 690
Tsp45I GTSAC 2 cut(s) 268, 397
TspDTI ATGAA 2 cut(s) 552, 908
TspGWI ACGGA 2 cut(s) 493, 698
TspMI CCCGGG 4 cut(s) 51, 66, 294, 913
TspRI CASTG 2 cut(s) 643, 975
VpaK11BI GGWCC 2 cut(s) 376, 907
XceI RCATGY 1 cut(s) 842
XmaI CCCGGG 4 cut(s) 51, 66, 294, 913
XmiI GTMKAC 1 cut(s) 717
XspI CTAG 3 cut(s) 563, 609, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.