Rroxscaffold_2G00093100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000633
Physical Location & Seq
Forward (+)
14518069 .. 14518951
883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00093100.1

Sequence Viewer

Length: 477 bp
ATGAGCAACTCCTTGCATGCCCCCGGTGCAAGGGTACGAGCCACGAAAAATAGAGACACCGGAGAGCTGGCGAACAGCATGAGGACCGCCCGGGCCTTTCACCAACAAAGTTGGGGAGCCATTCGAGCGAATACATCGAAACCACCGAAAATTGACTATACGGGAGTTGGAGATCCCTACCAACATCTACGTGCTTTCCGATCGCAAACAAGCGCCAAGGGATATACGGACGAACTAAGAATTTCCACACCGACTTCGACGATCGAGGATGAGCCACGAAAGAGGAGTGGGTCCACAATCATGATAGGTCACCCCATACCTCGAGCAAAAGAAGCAAAGAATCCTCGTCCGTGTCGAACAAGCTACGGGAACACCCACCCTACCCAGAGCAAAGGCCACAAGCAAGGTCCAAGGACACCCCCACCACCCCGTATGAGGTGTTCACAATCCCGAACGCTTCATACGAGACAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.6

Weight (kDa)

11.23

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 87
AclWI GGATC 1 cut(s) 167
AcsI RAATTY 1 cut(s) 240
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 2 cut(s) 30, 435
AluBI AGCT 2 cut(s) 67, 363
AluI AGCT 2 cut(s) 67, 363
Alw26I GTCTC 2 cut(s) 48, 460
AlwI GGATC 1 cut(s) 167
Ama87I CYCGRG 2 cut(s) 90, 321
AoxI GGCC 2 cut(s) 93, 394
ApoI RAATTY 1 cut(s) 240
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 4 cut(s) 84, 93, 291, 407
AsuC2I CCSGG 3 cut(s) 24, 91, 92
AsuHPI GGTGA 2 cut(s) 92, 302
AvaI CYCGRG 2 cut(s) 90, 321
AvaII GGWCC 3 cut(s) 84, 291, 407
BcnI CCSGG 3 cut(s) 24, 91, 92
BcoDI GTCTC 2 cut(s) 48, 460
BfoI RGCGCY 1 cut(s) 216
Bme1390I CCNGG 3 cut(s) 24, 91, 92
Bme18I GGWCC 3 cut(s) 84, 291, 407
BmeT110I CYCGRG 2 cut(s) 90, 321
BmgT120I GGNCC 4 cut(s) 84, 93, 291, 407
BmiI GGNNCC 2 cut(s) 118, 292
BmrFI CCNGG 3 cut(s) 24, 91, 92
BpuMI CCSGG 3 cut(s) 24, 91, 92
BsaAI YACGTR 1 cut(s) 191
BsaJI CCNNGG 4 cut(s) 22, 90, 216, 410
BsaWI WCCGGW 1 cut(s) 59
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 435
BseDI CCNNGG 4 cut(s) 22, 90, 216, 410
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 2 cut(s) 30, 435
BseRI GAGGAG 1 cut(s) 298
Bsh1285I CGRYCG 2 cut(s) 203, 264
BshFI GGCC 2 cut(s) 95, 396
BsiEI CGRYCG 2 cut(s) 203, 264
BsiHKCI CYCGRG 2 cut(s) 90, 321
BsiSI CCGG 3 cut(s) 24, 60, 91
BslI CCNNNNNNNGG 2 cut(s) 30, 435
BsmAI GTCTC 2 cut(s) 48, 460
BsnI GGCC 2 cut(s) 95, 396
BsoBI CYCGRG 2 cut(s) 90, 321
Bsp143I GATC 3 cut(s) 172, 200, 261
BspACI CCGC 1 cut(s) 87
BspANI GGCC 2 cut(s) 95, 396
BspHI TCATGA 1 cut(s) 300
BspLI GGNNCC 2 cut(s) 118, 292
BspPI GGATC 1 cut(s) 167
BssECI CCNNGG 4 cut(s) 22, 90, 216, 410
BssMI GATC 3 cut(s) 172, 200, 261
BssT1I CCWWGG 2 cut(s) 216, 410
BstBAI YACGTR 1 cut(s) 191
BstC8I GCNNGC 2 cut(s) 18, 69
BstDEI CTNAG 1 cut(s) 236
BstEII GGTNACC 1 cut(s) 308
BstF5I GGATG 1 cut(s) 274
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 3 cut(s) 175, 203, 264
BstMAI GTCTC 2 cut(s) 48, 460
BstMBI GATC 3 cut(s) 172, 200, 261
BstMCI CGRYCG 2 cut(s) 203, 264
BstMWI GCNNNNNNNGC 3 cut(s) 26, 125, 332
BstNSI RCATGY 1 cut(s) 20
BstPI GGTNACC 1 cut(s) 308
BstSCI CCNGG 3 cut(s) 22, 89, 90
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 2 cut(s) 95, 396
BtsCI GGATG 1 cut(s) 274
Cac8I GCNNGC 2 cut(s) 18, 69
CciI TCATGA 1 cut(s) 300
CfoI GCGC 1 cut(s) 215
Cfr13I GGNCC 4 cut(s) 84, 93, 291, 407
Cfr9I CCCGGG 1 cut(s) 90
Csp6I GTAC 1 cut(s) 35
CviAII CATG 3 cut(s) 17, 79, 301
CviJI RGCY 7 cut(s) 41, 67, 95, 119, 274, 363, 396
CviKI_1 RGCY 7 cut(s) 41, 67, 95, 119, 274, 363, 396
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 1 cut(s) 236
DpnI GATC 3 cut(s) 174, 202, 263
DpnII GATC 3 cut(s) 172, 200, 261
Eco130I CCWWGG 2 cut(s) 216, 410
Eco47I GGWCC 3 cut(s) 84, 291, 407
Eco88I CYCGRG 2 cut(s) 90, 321
Eco91I GGTNACC 1 cut(s) 308
EcoO65I GGTNACC 1 cut(s) 308
EcoT14I CCWWGG 2 cut(s) 216, 410
ErhI CCWWGG 2 cut(s) 216, 410
FaeI CATG 3 cut(s) 20, 82, 304
FaiI YATR 8 cut(s) 18, 80, 159, 225, 302, 317, 434, 462
FatI CATG 3 cut(s) 16, 78, 300
FokI GGATG 1 cut(s) 281
GlaI GCGC 1 cut(s) 214
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 2 cut(s) 95, 396
HapII CCGG 3 cut(s) 24, 60, 91
HhaI GCGC 1 cut(s) 215
Hin1II CATG 3 cut(s) 20, 82, 304
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HinfI GANTC 1 cut(s) 340
HpaII CCGG 3 cut(s) 24, 60, 91
HphI GGTGA 2 cut(s) 92, 302
Hpy166II GTNNAC 2 cut(s) 294, 443
Hpy188I TCNGA 1 cut(s) 200
Hpy188III TCNNGA 3 cut(s) 301, 450, 474
Hpy8I GTNNAC 2 cut(s) 294, 443
Hpy99I CGWCG 1 cut(s) 262
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 16, 29
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 125, 332
HpyF3I CTNAG 1 cut(s) 236
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 3 cut(s) 20, 82, 304
HspAI GCGC 1 cut(s) 213
Kzo9I GATC 3 cut(s) 172, 200, 261
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 5 cut(s) 37, 53, 73, 104, 398
MaeII ACGT 1 cut(s) 190
MaeIII GTNAC 1 cut(s) 308
MalI GATC 3 cut(s) 174, 202, 263
MboI GATC 3 cut(s) 172, 200, 261
MflI RGATCY 1 cut(s) 172
MluCI AATT 2 cut(s) 150, 240
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 6 cut(s) 75, 259, 276, 330, 354, 429
MslI CAYNNNNRTG 2 cut(s) 189, 299
MspI CCGG 3 cut(s) 24, 60, 91
MspR9I CCNGG 3 cut(s) 24, 91, 92
MwoI GCNNNNNNNGC 3 cut(s) 26, 125, 332
NciI CCSGG 3 cut(s) 24, 91, 92
NdeII GATC 3 cut(s) 172, 200, 261
NlaIII CATG 3 cut(s) 20, 82, 304
NlaIV GGNNCC 2 cut(s) 118, 292
NmuCI GTSAC 1 cut(s) 308
NspI RCATGY 1 cut(s) 20
PaeI GCATGC 1 cut(s) 20
PaeR7I CTCGAG 1 cut(s) 321
PagI TCATGA 1 cut(s) 300
PcsI WCGNNNNNNNCGW 4 cut(s) 143, 196, 352, 461
PfeI GAWTC 1 cut(s) 340
Ple19I CGATCG 2 cut(s) 203, 264
Ppu21I YACGTR 1 cut(s) 191
PspEI GGTNACC 1 cut(s) 308
PspN4I GGNNCC 2 cut(s) 118, 292
PspPI GGNCC 4 cut(s) 84, 93, 291, 407
PspXI VCTCGAGB 1 cut(s) 321
PsrI GAACNNNNNNTAC 4 cut(s) 424, 445, 456, 477
PsuI RGATCY 1 cut(s) 172
PvuI CGATCG 2 cut(s) 203, 264
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
RseI CAYNNNNRTG 2 cut(s) 189, 299
Sau3AI GATC 3 cut(s) 172, 200, 261
Sau96I GGNCC 4 cut(s) 84, 93, 291, 407
ScrFI CCNGG 3 cut(s) 24, 91, 92
SetI ASST 7 cut(s) 69, 193, 310, 322, 365, 409, 440
Sfr274I CTCGAG 1 cut(s) 321
SinI GGWCC 3 cut(s) 84, 291, 407
SlaI CTCGAG 1 cut(s) 321
SmaI CCCGGG 1 cut(s) 92
SmiMI CAYNNNNRTG 2 cut(s) 189, 299
SmlI CTYRAG 1 cut(s) 321
SmoI CTYRAG 1 cut(s) 321
SphI GCATGC 1 cut(s) 20
SrfI GCCCGGGC 1 cut(s) 92
Sse9I AATT 2 cut(s) 150, 240
SsiI CCGC 1 cut(s) 87
StyD4I CCNGG 3 cut(s) 22, 89, 90
StyI CCWWGG 2 cut(s) 216, 410
TaiI ACGT 1 cut(s) 193
TaqI TCGA 6 cut(s) 124, 137, 257, 264, 322, 355
TasI AATT 2 cut(s) 150, 240
TfiI GAWTC 1 cut(s) 340
TseFI GTSAC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 1 cut(s) 449
TspGWI ACGGA 2 cut(s) 242, 339
TspMI CCCGGG 1 cut(s) 90
VpaK11BI GGWCC 3 cut(s) 84, 291, 407
XapI RAATTY 1 cut(s) 240
XceI RCATGY 1 cut(s) 20
XhoI CTCGAG 1 cut(s) 321
XmaI CCCGGG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.