Rmu_sc0006997.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006997.1
OG0000633
Physical Location & Seq
Forward (+)
34948 .. 35574
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006997.1_g000014.1.cds

Sequence Viewer

Length: 627 bp
atgcaggatttggaagatgaaaacaaggcgctggcccgagcactagtcaggaggcaccagtacaacgaggcacttactcaggccctggctagagcatcccagctagcagacctgaatgctgccccgataacaggaactaccaccaccgcaccagcacccaccgagggcagccagaggttaatccaggtaccggtagacttattcccggaaagcttgagccatctaccaccaccaccgttaccacagccagttcacagtatcacgccggtacccgacgcaaacacggcattactcgtacaaatgagcaactccttgcatgctctgcaggcaagagtacaggccacgaaaaatagagacacctggagagctatgaacagttacgaggaccgcccggggcctttcacccaacaggttaggggagccattcgagcgaatacatcgaaaccactgaaaattgactatacgggagttggagatccctaccaacatctacaggctttccgatcgcaaacaaatgccaagggatatacggaagaagtgctttgtcagacaaatcaatggtgtcaaattggtcctgttcagattaaaagcaaaacccactcagtaacttcaagcaactcaacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

22.83

Weight (kDa)

8.6

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 187, 268
AccB1I GGYRCC 3 cut(s) 54, 187, 268
AccI GTMKAC 1 cut(s) 195
AciI CCGC 2 cut(s) 147, 388
AclWI GGATC 1 cut(s) 470
AfaI GTAC 5 cut(s) 62, 189, 270, 297, 336
AfiI CCNNNNNNNGG 3 cut(s) 131, 164, 190
AgeI ACCGGT 1 cut(s) 190
AgsI TTSAA 1 cut(s) 612
AhlI ACTAGT 1 cut(s) 43
AjnI CCWGG 3 cut(s) 84, 183, 359
AluBI AGCT 3 cut(s) 103, 213, 368
AluI AGCT 3 cut(s) 103, 213, 368
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 1 cut(s) 470
AlwNI CAGNNNCTG 1 cut(s) 85
Ama87I CYCGRG 2 cut(s) 36, 391
AoxI GGCC 4 cut(s) 33, 81, 339, 395
ApeKI GCWGC 2 cut(s) 119, 168
AsiGI ACCGGT 1 cut(s) 190
Asp718I GGTACC 2 cut(s) 187, 268
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 5 cut(s) 34, 82, 385, 395, 572
AsuC2I CCSGG 3 cut(s) 206, 392, 393
AsuHPI GGTGA 1 cut(s) 394
AsuNHI GCTAGC 1 cut(s) 103
AvaI CYCGRG 2 cut(s) 36, 391
AvaII GGWCC 2 cut(s) 385, 572
BaeI ACNNNNGTAYC 2 cut(s) 252, 285
BanI GGYRCC 3 cut(s) 54, 187, 268
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 106, 180
BccI CCATC 1 cut(s) 228
BceAI ACGGC 1 cut(s) 300
BciT130I CCWGG 3 cut(s) 86, 185, 361
BcnI CCSGG 3 cut(s) 206, 392, 393
BcoDI GTCTC 1 cut(s) 348
BcuI ACTAGT 1 cut(s) 43
BfaI CTAG 3 cut(s) 44, 90, 104
BfmI CTRYAG 2 cut(s) 323, 491
BfoI RGCGCY 1 cut(s) 32
BisI GCNGC 2 cut(s) 120, 169
BlsI GCNGC 2 cut(s) 121, 170
Bme1390I CCNGG 6 cut(s) 86, 185, 206, 361, 392, 393
Bme18I GGWCC 2 cut(s) 385, 572
BmeT110I CYCGRG 2 cut(s) 36, 391
BmgT120I GGNCC 5 cut(s) 34, 82, 385, 395, 572
BmiI GGNNCC 5 cut(s) 56, 189, 270, 396, 421
BmrFI CCNGG 6 cut(s) 86, 185, 206, 361, 392, 393
BmsI GCATC 1 cut(s) 104
BmtI GCTAGC 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 382
BpuEI CTTGAG 1 cut(s) 235
BpuMI CCSGG 3 cut(s) 206, 392, 393
BsaJI CCNNGG 5 cut(s) 84, 162, 391, 392, 519
BsaWI WCCGGW 1 cut(s) 190
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 164, 190
Bse118I RCCGGY 2 cut(s) 190, 265
Bse1I ACTGG 2 cut(s) 58, 248
BseBI CCWGG 3 cut(s) 86, 185, 361
BseDI CCNNGG 5 cut(s) 84, 162, 391, 392, 519
BseGI GGATG 1 cut(s) 95
BseLI CCNNNNNNNGG 3 cut(s) 131, 164, 190
BseMII CTCAG 2 cut(s) 92, 615
BseNI ACTGG 2 cut(s) 58, 248
BseXI GCAGC 2 cut(s) 106, 180
BseYI CCCAGC 1 cut(s) 99
Bsh1285I CGRYCG 1 cut(s) 506
BshFI GGCC 4 cut(s) 35, 83, 341, 397
BshNI GGYRCC 3 cut(s) 54, 187, 268
BshTI ACCGGT 1 cut(s) 190
BsiEI CGRYCG 1 cut(s) 506
BsiHKAI GWGCWC 1 cut(s) 43
BsiHKCI CYCGRG 2 cut(s) 36, 391
BsiSI CCGG 4 cut(s) 191, 206, 266, 392
BslI CCNNNNNNNGG 3 cut(s) 131, 164, 190
BsmAI GTCTC 1 cut(s) 348
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 4 cut(s) 35, 83, 341, 397
BsoBI CYCGRG 2 cut(s) 36, 391
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 2 cut(s) 475, 503
BspACI CCGC 2 cut(s) 147, 388
BspANI GGCC 4 cut(s) 35, 83, 341, 397
BspCNI CTCAG 2 cut(s) 91, 614
BspLI GGNNCC 5 cut(s) 56, 189, 270, 396, 421
BspMAI CTGCAG 1 cut(s) 327
BspOI GCTAGC 1 cut(s) 107
BspPI GGATC 1 cut(s) 470
BspT107I GGYRCC 3 cut(s) 54, 187, 268
BsrFI RCCGGY 2 cut(s) 190, 265
BsrI ACTGG 2 cut(s) 58, 248
BssAI RCCGGY 2 cut(s) 190, 265
BssECI CCNNGG 5 cut(s) 84, 162, 391, 392, 519
BssMI GATC 2 cut(s) 475, 503
BssT1I CCWWGG 1 cut(s) 519
Bst2UI CCWGG 3 cut(s) 86, 185, 361
Bst4CI ACNGT 3 cut(s) 237, 257, 377
BstAPI GCANNNNNTGC 1 cut(s) 322
BstC8I GCNNGC 4 cut(s) 33, 105, 318, 327
BstDEI CTNAG 2 cut(s) 78, 601
BstF5I GGATG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 2 cut(s) 478, 506
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 2 cut(s) 475, 503
BstMCI CGRYCG 1 cut(s) 506
BstMWI GCNNNNNNNGC 4 cut(s) 284, 322, 326, 428
BstNI CCWGG 3 cut(s) 86, 185, 361
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 6 cut(s) 84, 183, 204, 359, 390, 391
BstSFI CTRYAG 2 cut(s) 323, 491
BstV1I GCAGC 2 cut(s) 106, 180
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BsuRI GGCC 4 cut(s) 35, 83, 341, 397
BtsCI GGATG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 446
Cac8I GCNNGC 4 cut(s) 33, 105, 318, 327
CaiI CAGNNNCTG 1 cut(s) 85
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 2 cut(s) 190, 265
Cfr13I GGNCC 5 cut(s) 34, 82, 385, 395, 572
Cfr9I CCCGGG 1 cut(s) 391
CseI GACGC 1 cut(s) 284
Csp6I GTAC 5 cut(s) 61, 188, 269, 296, 335
CspAI ACCGGT 1 cut(s) 190
CviAII CATG 1 cut(s) 317
CviQI GTAC 5 cut(s) 61, 188, 269, 296, 335
DdeI CTNAG 2 cut(s) 78, 601
DpnI GATC 2 cut(s) 477, 505
DpnII GATC 2 cut(s) 475, 503
Eco130I CCWWGG 1 cut(s) 519
Eco47I GGWCC 2 cut(s) 385, 572
Eco88I CYCGRG 2 cut(s) 36, 391
EcoO109I RGGNCCY 2 cut(s) 82, 395
EcoRII CCWGG 3 cut(s) 84, 183, 359
EcoT14I CCWWGG 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 1 cut(s) 320
FaiI YATR 5 cut(s) 318, 371, 462, 528, 625
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FatI CATG 1 cut(s) 316
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 120, 169
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 2 cut(s) 120, 169
FspBI CTAG 3 cut(s) 44, 90, 104
GlaI GCGC 1 cut(s) 30
GluI GCNGC 2 cut(s) 120, 169
GsaI CCCAGC 1 cut(s) 103
GsuI CTGGAG 1 cut(s) 382
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 4 cut(s) 35, 83, 341, 397
HapII CCGG 4 cut(s) 191, 206, 266, 392
HgaI GACGC 1 cut(s) 284
HhaI GCGC 1 cut(s) 31
Hin1II CATG 1 cut(s) 320
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 211
HpaII CCGG 4 cut(s) 191, 206, 266, 392
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 2 cut(s) 196, 253
Hpy188I TCNGA 3 cut(s) 503, 549, 582
Hpy188III TCNNGA 1 cut(s) 49
Hpy8I GTNNAC 2 cut(s) 196, 253
Hpy99I CGWCG 1 cut(s) 278
HpyCH4III ACNGT 3 cut(s) 237, 257, 377
HpyCH4V TGCA 3 cut(s) 4, 316, 325
HpyF10VI GCNNNNNNNGC 4 cut(s) 284, 322, 326, 428
HpyF3I CTNAG 2 cut(s) 78, 601
Hsp92II CATG 1 cut(s) 320
HspAI GCGC 1 cut(s) 29
KpnI GGTACC 2 cut(s) 191, 272
Kzo9I GATC 2 cut(s) 475, 503
LmnI GCTCC 1 cut(s) 419
Lsp1109I GCAGC 2 cut(s) 106, 180
LweI GCATC 1 cut(s) 104
MaeI CTAG 3 cut(s) 44, 90, 104
MaeIII GTNAC 3 cut(s) 237, 377, 604
MalI GATC 2 cut(s) 477, 505
MboI GATC 2 cut(s) 475, 503
MboII GAAGA 2 cut(s) 26, 545
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 2 cut(s) 453, 567
MmeI TCCRAC 1 cut(s) 451
MnlI CCTC 5 cut(s) 45, 61, 157, 168, 376
MseI TTAA 2 cut(s) 179, 585
MspI CCGG 4 cut(s) 191, 206, 266, 392
MspR9I CCNGG 6 cut(s) 86, 185, 206, 361, 392, 393
Mva1269I GAATGC 1 cut(s) 121
MvaI CCWGG 3 cut(s) 86, 185, 361
MwoI GCNNNNNNNGC 4 cut(s) 284, 322, 326, 428
NciI CCSGG 3 cut(s) 206, 392, 393
NdeII GATC 2 cut(s) 475, 503
NheI GCTAGC 1 cut(s) 103
NlaIII CATG 1 cut(s) 320
NlaIV GGNNCC 5 cut(s) 56, 189, 270, 396, 421
NspI RCATGY 1 cut(s) 320
PaeI GCATGC 1 cut(s) 320
PctI GAATGC 1 cut(s) 121
PfoI TCCNGGA 1 cut(s) 204
PinAI ACCGGT 1 cut(s) 190
PkrI GCNGC 2 cut(s) 121, 170
Ple19I CGATCG 1 cut(s) 506
Psp6I CCWGG 3 cut(s) 84, 183, 359
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 3 cut(s) 84, 183, 359
PspN4I GGNNCC 5 cut(s) 56, 189, 270, 396, 421
PspPI GGNCC 5 cut(s) 34, 82, 385, 395, 572
PstI CTGCAG 1 cut(s) 327
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 1 cut(s) 475
PvuI CGATCG 1 cut(s) 506
RsaI GTAC 5 cut(s) 62, 189, 270, 297, 336
RsaNI GTAC 5 cut(s) 61, 188, 269, 296, 335
SaqAI TTAA 2 cut(s) 179, 585
SatI GCNGC 2 cut(s) 120, 169
Sau3AI GATC 2 cut(s) 475, 503
Sau96I GGNCC 5 cut(s) 34, 82, 385, 395, 572
ScrFI CCNGG 6 cut(s) 86, 185, 206, 361, 392, 393
SduI GDGCHC 1 cut(s) 43
SetI ASST 8 cut(s) 105, 114, 179, 189, 215, 362, 370, 414
SfaNI GCATC 1 cut(s) 104
SfcI CTRYAG 2 cut(s) 323, 491
SinI GGWCC 2 cut(s) 385, 572
SmaI CCCGGG 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
SpeI ACTAGT 1 cut(s) 43
SphI GCATGC 1 cut(s) 320
Sse9I AATT 2 cut(s) 453, 567
SsiI CCGC 2 cut(s) 147, 388
SspMI CTAG 3 cut(s) 44, 90, 104
StyD4I CCNGG 6 cut(s) 84, 183, 204, 359, 390, 391
StyI CCWWGG 1 cut(s) 519
TaaI ACNGT 3 cut(s) 237, 257, 377
TaqI TCGA 2 cut(s) 427, 440
TasI AATT 2 cut(s) 453, 567
TatI WGTACW 2 cut(s) 60, 334
Tru1I TTAA 2 cut(s) 179, 585
Tru9I TTAA 2 cut(s) 179, 585
TscAI CASTG 1 cut(s) 453
TseI GCWGC 2 cut(s) 119, 168
TspDTI ATGAA 2 cut(s) 33, 386
TspGWI ACGGA 1 cut(s) 545
TspMI CCCGGG 1 cut(s) 391
TspRI CASTG 1 cut(s) 453
VpaK11BI GGWCC 2 cut(s) 385, 572
XceI RCATGY 1 cut(s) 320
XmaI CCCGGG 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 195
XspI CTAG 3 cut(s) 44, 90, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.