Rmu_sc0002075.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002075.1
OG0000633
Physical Location & Seq
Forward (+)
21 .. 527
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002075.1_g000001.1.cds

Sequence Viewer

Length: 507 bp
atgcgagctgagatcgcagccttcaaggagcagtccaggatcgatcgggaacaacgaagtatcgatagggaaacaaaccgcctcacgcaacagagaatgcaggatttggaagatgaaaacacagcgctggcccaagcactagacaggaggcaccagcacaacgaggcacttactcaggccctggctagagcatcccagctagcagacctgaacgctgccgcgataataggaaacaccaacaccgcaccagcacctcccacggagggcagccagaggttaatccaggaaccggtagacttattcccggaaagcttgaggcatctaccaccaccacctttaccacagccagttcacagtatcacgccggtacccgacgcaaacaaggcattactcgtacaaatgagcaactctttgcatgccctgcaggcaagggtacaggccacggaaaatagagacacctgtagagctatgaacagttacgaggaccgcccggggcctttcacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.75

Weight (kDa)

5.72

Isoelectric Point (pI)

56.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 367
AccB1I GGYRCC 2 cut(s) 150, 367
AccI GTMKAC 1 cut(s) 294
AccII CGCG 1 cut(s) 221
AciI CCGC 4 cut(s) 79, 219, 243, 487
AclWI GGATC 1 cut(s) 47
AfaI GTAC 3 cut(s) 369, 396, 435
AfeI AGCGCT 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 263, 289
AgeI ACCGGT 1 cut(s) 289
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 3 cut(s) 35, 180, 282
AluBI AGCT 4 cut(s) 8, 199, 312, 467
AluI AGCT 4 cut(s) 8, 199, 312, 467
Alw26I GTCTC 1 cut(s) 447
AlwI GGATC 1 cut(s) 47
AlwNI CAGNNNCTG 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 490
Aor51HI AGCGCT 1 cut(s) 126
AoxI GGCC 4 cut(s) 129, 177, 438, 494
ApeKI GCWGC 3 cut(s) 17, 215, 267
AsiGI ACCGGT 1 cut(s) 289
Asp718I GGTACC 1 cut(s) 367
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 4 cut(s) 130, 178, 484, 494
AsuC2I CCSGG 3 cut(s) 305, 491, 492
AsuHPI GGTGA 1 cut(s) 493
AsuNHI GCTAGC 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 490
AvaII GGWCC 1 cut(s) 484
BaeI ACNNNNGTAYC 2 cut(s) 351, 384
BanI GGYRCC 2 cut(s) 150, 367
BbvI GCAGC 3 cut(s) 29, 202, 279
BciT130I CCWGG 3 cut(s) 37, 182, 284
BcnI CCSGG 3 cut(s) 305, 491, 492
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 3 cut(s) 140, 186, 200
BfmI CTRYAG 2 cut(s) 422, 460
BfoI RGCGCY 1 cut(s) 128
BglI GCCNNNNNGGC 1 cut(s) 425
BisI GCNGC 4 cut(s) 18, 216, 219, 268
BlsI GCNGC 4 cut(s) 19, 217, 220, 269
Bme1390I CCNGG 6 cut(s) 37, 182, 284, 305, 491, 492
Bme18I GGWCC 1 cut(s) 484
BmeT110I CYCGRG 1 cut(s) 490
BmgT120I GGNCC 4 cut(s) 130, 178, 484, 494
BmiI GGNNCC 4 cut(s) 152, 288, 369, 495
BmrFI CCNGG 6 cut(s) 37, 182, 284, 305, 491, 492
BmsI GCATC 2 cut(s) 200, 328
BmtI GCTAGC 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 334
BpuMI CCSGG 3 cut(s) 305, 491, 492
Bsa29I ATCGAT 2 cut(s) 42, 63
BsaJI CCNNGG 5 cut(s) 180, 258, 441, 490, 491
BsaWI WCCGGW 1 cut(s) 289
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 289
Bse118I RCCGGY 2 cut(s) 289, 364
Bse1I ACTGG 1 cut(s) 347
BseBI CCWGG 3 cut(s) 37, 182, 284
BseCI ATCGAT 2 cut(s) 42, 63
BseDI CCNNGG 5 cut(s) 180, 258, 441, 490, 491
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 2 cut(s) 263, 289
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 347
BseXI GCAGC 3 cut(s) 29, 202, 279
BseYI CCCAGC 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 221
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 4 cut(s) 131, 179, 440, 496
BshNI GGYRCC 2 cut(s) 150, 367
BshTI ACCGGT 1 cut(s) 289
BshVI ATCGAT 2 cut(s) 42, 63
BsiEI CGRYCG 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 490
BsiSI CCGG 4 cut(s) 290, 305, 365, 491
BslI CCNNNNNNNGG 2 cut(s) 263, 289
BsmAI GTCTC 1 cut(s) 447
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 4 cut(s) 131, 179, 440, 496
BsoBI CYCGRG 1 cut(s) 490
Bsp143I GATC 3 cut(s) 12, 39, 43
BspACI CCGC 4 cut(s) 79, 219, 243, 487
BspANI GGCC 4 cut(s) 131, 179, 440, 496
BspCNI CTCAG 1 cut(s) 187
BspDI ATCGAT 2 cut(s) 42, 63
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 4 cut(s) 152, 288, 369, 495
BspMAI CTGCAG 1 cut(s) 426
BspOI GCTAGC 1 cut(s) 203
BspPI GGATC 1 cut(s) 47
BspT107I GGYRCC 2 cut(s) 150, 367
BsrFI RCCGGY 2 cut(s) 289, 364
BsrI ACTGG 1 cut(s) 347
BssAI RCCGGY 2 cut(s) 289, 364
BssECI CCNNGG 5 cut(s) 180, 258, 441, 490, 491
BssMI GATC 3 cut(s) 12, 39, 43
Bst2UI CCWGG 3 cut(s) 37, 182, 284
Bst4CI ACNGT 2 cut(s) 356, 476
BstAPI GCANNNNNTGC 1 cut(s) 421
BstC8I GCNNGC 5 cut(s) 6, 129, 201, 417, 426
BstDEI CTNAG 2 cut(s) 9, 174
BstDSI CCRYGG 2 cut(s) 258, 441
BstF5I GGATG 1 cut(s) 191
BstFNI CGCG 1 cut(s) 221
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 3 cut(s) 15, 42, 46
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 3 cut(s) 12, 39, 43
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 4 cut(s) 14, 383, 421, 425
BstNI CCWGG 3 cut(s) 37, 182, 284
BstNSI RCATGY 1 cut(s) 419
BstSCI CCNGG 6 cut(s) 35, 180, 282, 303, 489, 490
BstSFI CTRYAG 2 cut(s) 422, 460
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 3 cut(s) 29, 202, 279
Bsu15I ATCGAT 2 cut(s) 42, 63
BsuRI GGCC 4 cut(s) 131, 179, 440, 496
BsuTUI ATCGAT 2 cut(s) 42, 63
BtgI CCRYGG 2 cut(s) 258, 441
BtsCI GGATG 1 cut(s) 191
Cac8I GCNNGC 5 cut(s) 6, 129, 201, 417, 426
CaiI CAGNNNCTG 1 cut(s) 181
CfoI GCGC 1 cut(s) 127
Cfr10I RCCGGY 2 cut(s) 289, 364
Cfr13I GGNCC 4 cut(s) 130, 178, 484, 494
Cfr9I CCCGGG 1 cut(s) 490
ClaI ATCGAT 2 cut(s) 42, 63
CseI GACGC 1 cut(s) 383
Csp6I GTAC 3 cut(s) 368, 395, 434
CspAI ACCGGT 1 cut(s) 289
CviAII CATG 1 cut(s) 416
CviQI GTAC 3 cut(s) 368, 395, 434
DdeI CTNAG 2 cut(s) 9, 174
DpnI GATC 3 cut(s) 14, 41, 45
DpnII GATC 3 cut(s) 12, 39, 43
Eco47I GGWCC 1 cut(s) 484
Eco47III AGCGCT 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 490
EcoO109I RGGNCCY 2 cut(s) 178, 494
EcoRII CCWGG 3 cut(s) 35, 180, 282
FaeI CATG 1 cut(s) 419
FaiI YATR 2 cut(s) 417, 470
FatI CATG 1 cut(s) 415
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 4 cut(s) 18, 216, 219, 268
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 4 cut(s) 18, 216, 219, 268
FspBI CTAG 3 cut(s) 140, 186, 200
GlaI GCGC 1 cut(s) 126
GluI GCNGC 4 cut(s) 18, 216, 219, 268
GsaI CCCAGC 1 cut(s) 199
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 4 cut(s) 131, 179, 440, 496
HapII CCGG 4 cut(s) 290, 305, 365, 491
HgaI GACGC 1 cut(s) 383
HhaI GCGC 1 cut(s) 127
Hin1II CATG 1 cut(s) 419
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HindIII AAGCTT 1 cut(s) 310
HpaII CCGG 4 cut(s) 290, 305, 365, 491
HphI GGTGA 1 cut(s) 493
Hpy166II GTNNAC 2 cut(s) 295, 352
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 2 cut(s) 295, 352
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 356, 476
HpyCH4V TGCA 3 cut(s) 100, 415, 424
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 383, 421, 425
HpyF3I CTNAG 2 cut(s) 9, 174
Hsp92II CATG 1 cut(s) 419
HspAI GCGC 1 cut(s) 125
KpnI GGTACC 1 cut(s) 371
Kzo9I GATC 3 cut(s) 12, 39, 43
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 3 cut(s) 29, 202, 279
LweI GCATC 2 cut(s) 200, 328
MaeI CTAG 3 cut(s) 140, 186, 200
MaeIII GTNAC 1 cut(s) 476
MalI GATC 3 cut(s) 14, 41, 45
MboI GATC 3 cut(s) 12, 39, 43
MboII GAAGA 1 cut(s) 122
MnlI CCTC 8 cut(s) 92, 141, 157, 256, 264, 267, 309, 475
MseI TTAA 1 cut(s) 278
MspI CCGG 4 cut(s) 290, 305, 365, 491
MspR9I CCNGG 6 cut(s) 37, 182, 284, 305, 491, 492
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 3 cut(s) 37, 182, 284
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 4 cut(s) 14, 383, 421, 425
NciI CCSGG 3 cut(s) 305, 491, 492
NdeII GATC 3 cut(s) 12, 39, 43
NheI GCTAGC 1 cut(s) 199
NlaIII CATG 1 cut(s) 419
NlaIV GGNNCC 4 cut(s) 152, 288, 369, 495
NspI RCATGY 1 cut(s) 419
PaeI GCATGC 1 cut(s) 419
PcsI WCGNNNNNNNCGW 1 cut(s) 52
PctI GAATGC 1 cut(s) 102
PfoI TCCNGGA 3 cut(s) 35, 282, 303
PinAI ACCGGT 1 cut(s) 289
PkrI GCNGC 4 cut(s) 19, 217, 220, 269
Ple19I CGATCG 1 cut(s) 46
Psp6I CCWGG 3 cut(s) 35, 180, 282
PspFI CCCAGC 1 cut(s) 195
PspGI CCWGG 3 cut(s) 35, 180, 282
PspN4I GGNNCC 4 cut(s) 152, 288, 369, 495
PspPI GGNCC 4 cut(s) 130, 178, 484, 494
PstI CTGCAG 1 cut(s) 426
PstNI CAGNNNCTG 1 cut(s) 181
PvuI CGATCG 1 cut(s) 46
RsaI GTAC 3 cut(s) 369, 396, 435
RsaNI GTAC 3 cut(s) 368, 395, 434
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 4 cut(s) 18, 216, 219, 268
Sau3AI GATC 3 cut(s) 12, 39, 43
Sau96I GGNCC 4 cut(s) 130, 178, 484, 494
SbfI CCTGCAGG 1 cut(s) 426
ScrFI CCNGG 6 cut(s) 37, 182, 284, 305, 491, 492
SdaI CCTGCAGG 1 cut(s) 426
SfaNI GCATC 2 cut(s) 200, 328
SfcI CTRYAG 2 cut(s) 422, 460
SinI GGWCC 1 cut(s) 484
SmaI CCCGGG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 313
SmoI CTYRAG 1 cut(s) 313
SphI GCATGC 1 cut(s) 419
Sse8387I CCTGCAGG 1 cut(s) 426
SsiI CCGC 4 cut(s) 79, 219, 243, 487
SspMI CTAG 3 cut(s) 140, 186, 200
StyD4I CCNGG 6 cut(s) 35, 180, 282, 303, 489, 490
TaaI ACNGT 2 cut(s) 356, 476
TaqI TCGA 2 cut(s) 42, 63
TauI GCSGC 1 cut(s) 221
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TseI GCWGC 3 cut(s) 17, 215, 267
TspDTI ATGAA 2 cut(s) 129, 485
TspGWI ACGGA 2 cut(s) 275, 458
TspMI CCCGGG 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 484
XceI RCATGY 1 cut(s) 419
XmaI CCCGGG 1 cut(s) 490
XmiI GTMKAC 1 cut(s) 294
XspI CTAG 3 cut(s) 140, 186, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.