Rmu_sc0001866.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001866.1
OG0000633
Physical Location & Seq
Forward (+)
54197 .. 56003
1807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001866.1_g000009.1.cds

Sequence Viewer

Length: 792 bp
atgaccccagttgtagagatagaaagagaggaagatgaagatttttacctgagagaagctacaatcgtcaaggaggtgatgagagattctccacataattggtttggcactagaccaagggccccatcggtactcccaggtaccacgccatgggccgggttcacacctcaccatggcgggcttcacataaggtgccaccccgagcacccagggccaggggcaagaccagcacagcccatctattctacaaatacaagactgatagcatcagaagaacctgtgtcccacatcgaggatagggaagactccatccccacacttgagtataaagatcatggcacaaccacctttgaaggggaaggacccctttgtctacaatctaatctacataactatcagtttctcactcaggcatcggagaggtataaaccgtccggggccacggatatgaataagccggaagtgacaggagagagaagtgtcgcccgggcacttgtattctccccgggaacttcatcagcagaggcgccagctgttcgggaggaaatgcatggtctcagatccttggacccaatagtcccggatctggtgactccggtatcggagttagagtctatgcgagctgagatcgcagccttcaaagagcagtcaaggatcgatcgggaacaacgaagtaccgatagggaaacaaaccgcctcacgcaacagagaatggaggatttggaagatgaaaatacggcgctggctcgggcactagacaggaggcatcagcacaacgaggcacttacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

263

Amino Acids

29.66

Weight (kDa)

5.19

Isoelectric Point (pI)

59.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 369, 575
Acc65I GGTACC 1 cut(s) 140
AccB1I GGYRCC 3 cut(s) 140, 192, 526
AccB7I CCANNNNNTGG 1 cut(s) 150
AccI GTMKAC 1 cut(s) 373
AciI CCGC 2 cut(s) 177, 694
AclWI GGATC 3 cut(s) 555, 591, 662
AcyI GRCGYC 1 cut(s) 527
AfaI GTAC 3 cut(s) 132, 142, 676
AfiI CCNNNNNNNGG 7 cut(s) 150, 155, 173, 215, 292, 354, 586
AgsI TTSAA 2 cut(s) 353, 640
AjnI CCWGG 3 cut(s) 136, 208, 214
AluBI AGCT 3 cut(s) 59, 533, 623
AluI AGCT 3 cut(s) 59, 533, 623
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 560
AlwI GGATC 3 cut(s) 555, 591, 662
Ama87I CYCGRG 4 cut(s) 200, 486, 505, 747
AoxI GGCC 4 cut(s) 120, 153, 212, 438
ApaI GGGCCC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 632
Asp718I GGTACC 1 cut(s) 140
AspLEI GCGC 2 cut(s) 529, 742
AspS9I GGNCC 7 cut(s) 120, 121, 153, 212, 362, 438, 568
AsuC2I CCSGG 7 cut(s) 157, 436, 487, 488, 506, 507, 581
AsuHPI GGTGA 3 cut(s) 88, 161, 601
AvaI CYCGRG 4 cut(s) 200, 486, 505, 747
AvaII GGWCC 2 cut(s) 362, 568
BaeGI GKGCMC 3 cut(s) 124, 493, 754
BaeI ACNNNNGTAYC 2 cut(s) 582, 615
BanI GGYRCC 3 cut(s) 140, 192, 526
BanII GRGCYC 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 309
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 644
BccI CCATC 3 cut(s) 133, 245, 317
BceAI ACGGC 1 cut(s) 753
BciT130I CCWGG 3 cut(s) 138, 210, 216
BcnI CCSGG 7 cut(s) 157, 436, 487, 488, 506, 507, 581
BcoDI GTCTC 1 cut(s) 560
BfaI CTAG 2 cut(s) 111, 755
BfoI RGCGCY 2 cut(s) 530, 743
BisI GCNGC 1 cut(s) 633
BlsI GCNGC 1 cut(s) 634
Bme18I GGWCC 2 cut(s) 362, 568
BmeT110I CYCGRG 4 cut(s) 200, 486, 505, 747
BmgT120I GGNCC 7 cut(s) 120, 121, 153, 212, 362, 438, 568
BmiI GGNNCC 8 cut(s) 122, 123, 142, 194, 364, 439, 528, 570
BmsI GCATC 3 cut(s) 275, 422, 775
BpiI GAAGAC 1 cut(s) 309
BplI GAGNNNNNCTC 2 cut(s) 73, 105
BpuEI CTTGAG 1 cut(s) 341
BpuMI CCSGG 7 cut(s) 157, 436, 487, 488, 506, 507, 581
Bsa29I ATCGAT 1 cut(s) 657
BsaHI GRCGYC 1 cut(s) 527
BsaI GGTCTC 1 cut(s) 560
BsaWI WCCGGW 1 cut(s) 595
BsaXI ACNNNNNCTCC 2 cut(s) 596, 626
Bsc4I CCNNNNNNNGG 7 cut(s) 150, 155, 173, 215, 292, 354, 586
Bse1I ACTGG 1 cut(s) 8
BseBI CCWGG 3 cut(s) 138, 210, 216
BseCI ATCGAT 1 cut(s) 657
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 7 cut(s) 150, 155, 173, 215, 292, 354, 586
BseMII CTCAG 4 cut(s) 41, 422, 571, 615
BseNI ACTGG 1 cut(s) 8
BseSI GKGCMC 3 cut(s) 124, 493, 754
BseXI GCAGC 1 cut(s) 644
Bsh1285I CGRYCG 1 cut(s) 661
BshFI GGCC 4 cut(s) 122, 155, 214, 440
BshNI GGYRCC 3 cut(s) 140, 192, 526
BshVI ATCGAT 1 cut(s) 657
BsiEI CGRYCG 1 cut(s) 661
BsiHKAI GWGCWC 1 cut(s) 207
BsiHKCI CYCGRG 4 cut(s) 200, 486, 505, 747
BsiSI CCGG 7 cut(s) 156, 435, 458, 487, 506, 581, 596
BslFI GGGAC 2 cut(s) 268, 563
BslI CCNNNNNNNGG 7 cut(s) 150, 155, 173, 215, 292, 354, 586
BsmAI GTCTC 1 cut(s) 560
BsmFI GGGAC 2 cut(s) 268, 563
BsnI GGCC 4 cut(s) 122, 155, 214, 440
Bso31I GGTCTC 1 cut(s) 560
BsoBI CYCGRG 4 cut(s) 200, 486, 505, 747
Bsp120I GGGCCC 1 cut(s) 120
Bsp1286I GDGCHC 4 cut(s) 124, 207, 493, 754
Bsp143I GATC 6 cut(s) 331, 560, 583, 627, 654, 658
Bsp19I CCATGG 2 cut(s) 149, 172
BspACI CCGC 2 cut(s) 177, 694
BspANI GGCC 4 cut(s) 122, 155, 214, 440
BspCNI CTCAG 4 cut(s) 42, 421, 570, 616
BspDI ATCGAT 1 cut(s) 657
BspLI GGNNCC 8 cut(s) 122, 123, 142, 194, 364, 439, 528, 570
BspPI GGATC 3 cut(s) 555, 591, 662
BspT107I GGYRCC 3 cut(s) 140, 192, 526
BspTNI GGTCTC 1 cut(s) 560
BsrI ACTGG 1 cut(s) 8
BssMI GATC 6 cut(s) 331, 560, 583, 627, 654, 658
BssNI GRCGYC 1 cut(s) 527
BssT1I CCWWGG 4 cut(s) 116, 149, 172, 564
Bst2UI CCWGG 3 cut(s) 138, 210, 216
Bst4CI ACNGT 1 cut(s) 432
BstACI GRCGYC 1 cut(s) 527
BstC8I GCNNGC 4 cut(s) 179, 531, 621, 744
BstDEI CTNAG 5 cut(s) 50, 408, 557, 624, 789
BstDSI CCRYGG 3 cut(s) 149, 172, 441
BstF5I GGATG 1 cut(s) 309
BstH2I RGCGCY 2 cut(s) 530, 743
BstHHI GCGC 2 cut(s) 529, 742
BstKTI GATC 6 cut(s) 334, 563, 586, 630, 657, 661
BstMAI GTCTC 1 cut(s) 560
BstMBI GATC 6 cut(s) 331, 560, 583, 627, 654, 658
BstMCI CGRYCG 1 cut(s) 661
BstMWI GCNNNNNNNGC 3 cut(s) 211, 227, 629
BstNI CCWGG 3 cut(s) 138, 210, 216
BstSLI GKGCMC 3 cut(s) 124, 493, 754
BstV1I GCAGC 1 cut(s) 644
BstV2I GAAGAC 1 cut(s) 309
BstX2I RGATCY 2 cut(s) 560, 583
BstXI CCANNNNNNTGG 1 cut(s) 99
BstYI RGATCY 2 cut(s) 560, 583
Bsu15I ATCGAT 1 cut(s) 657
BsuRI GGCC 4 cut(s) 122, 155, 214, 440
BsuTUI ATCGAT 1 cut(s) 657
BtgI CCRYGG 3 cut(s) 149, 172, 441
BtsCI GGATG 1 cut(s) 309
Cac8I GCNNGC 4 cut(s) 179, 531, 621, 744
CfoI GCGC 2 cut(s) 529, 742
Cfr13I GGNCC 7 cut(s) 120, 121, 153, 212, 362, 438, 568
Cfr9I CCCGGG 2 cut(s) 486, 505
ClaI ATCGAT 1 cut(s) 657
Csp6I GTAC 3 cut(s) 131, 141, 675
CviAII CATG 4 cut(s) 150, 173, 335, 551
CviQI GTAC 3 cut(s) 131, 141, 675
DdeI CTNAG 5 cut(s) 50, 408, 557, 624, 789
DinI GGCGCC 1 cut(s) 528
DpnI GATC 6 cut(s) 333, 562, 585, 629, 656, 660
DpnII GATC 6 cut(s) 331, 560, 583, 627, 654, 658
DrdI GACNNNNNNGTC 2 cut(s) 369, 575
DseDI GACNNNNNNGTC 2 cut(s) 369, 575
Eco130I CCWWGG 4 cut(s) 116, 149, 172, 564
Eco24I GRGCYC 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 560
Eco47I GGWCC 2 cut(s) 362, 568
Eco88I CYCGRG 4 cut(s) 200, 486, 505, 747
EcoO109I RGGNCCY 3 cut(s) 120, 121, 362
EcoRII CCWGG 3 cut(s) 136, 208, 214
EcoT14I CCWWGG 4 cut(s) 116, 149, 172, 564
EcoT22I ATGCAT 1 cut(s) 552
EcoT38I GRGCYC 1 cut(s) 124
EgeI GGCGCC 1 cut(s) 528
EheI GGCGCC 1 cut(s) 528
ErhI CCWWGG 4 cut(s) 116, 149, 172, 564
FaeI CATG 4 cut(s) 153, 176, 338, 554
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FaqI GGGAC 2 cut(s) 268, 563
FatI CATG 4 cut(s) 149, 172, 334, 550
FauI CCCGC 1 cut(s) 170
FblI GTMKAC 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 633
FokI GGATG 1 cut(s) 296
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 633
FspBI CTAG 2 cut(s) 111, 755
GlaI GCGC 2 cut(s) 528, 741
GluI GCNGC 1 cut(s) 633
HaeII RGCGCY 2 cut(s) 530, 743
HaeIII GGCC 4 cut(s) 122, 155, 214, 440
HapII CCGG 7 cut(s) 156, 435, 458, 487, 506, 581, 596
HhaI GCGC 2 cut(s) 529, 742
Hin1I GRCGYC 1 cut(s) 527
Hin1II CATG 4 cut(s) 153, 176, 338, 554
Hin6I GCGC 2 cut(s) 527, 740
HinP1I GCGC 2 cut(s) 527, 740
HinfI GANTC 4 cut(s) 86, 305, 592, 611
HpaII CCGG 7 cut(s) 156, 435, 458, 487, 506, 581, 596
HphI GGTGA 3 cut(s) 88, 161, 601
Hpy166II GTNNAC 2 cut(s) 162, 374
Hpy188I TCNGA 4 cut(s) 271, 418, 560, 604
Hpy188III TCNNGA 2 cut(s) 539, 662
Hpy8I GTNNAC 2 cut(s) 162, 374
HpyAV CCTTC 3 cut(s) 347, 353, 646
HpyCH4III ACNGT 1 cut(s) 432
HpyCH4V TGCA 1 cut(s) 550
HpyF10VI GCNNNNNNNGC 3 cut(s) 211, 227, 629
HpyF3I CTNAG 5 cut(s) 50, 408, 557, 624, 789
Hsp92I GRCGYC 1 cut(s) 527
Hsp92II CATG 4 cut(s) 153, 176, 338, 554
HspAI GCGC 2 cut(s) 527, 740
KasI GGCGCC 1 cut(s) 526
KpnI GGTACC 1 cut(s) 144
Kzo9I GATC 6 cut(s) 331, 560, 583, 627, 654, 658
Lsp1109I GCAGC 1 cut(s) 644
LweI GCATC 3 cut(s) 275, 422, 775
MaeI CTAG 2 cut(s) 111, 755
MaeIII GTNAC 2 cut(s) 463, 589
MalI GATC 6 cut(s) 333, 562, 585, 629, 656, 660
MboI GATC 6 cut(s) 331, 560, 583, 627, 654, 658
MboII GAAGA 5 cut(s) 44, 50, 284, 314, 737
MflI RGATCY 2 cut(s) 560, 583
MhlI GDGCHC 4 cut(s) 124, 207, 493, 754
MluCI AATT 1 cut(s) 97
Mly113I GGCGCC 1 cut(s) 527
MlyI GAGTC 3 cut(s) 299, 586, 620
Mph1103I ATGCAT 1 cut(s) 552
MslI CAYNNNNRTG 1 cut(s) 446
MspA1I CMGCKG 1 cut(s) 533
MspI CCGG 7 cut(s) 156, 435, 458, 487, 506, 581, 596
MvaI CCWGG 3 cut(s) 138, 210, 216
MwoI GCNNNNNNNGC 3 cut(s) 211, 227, 629
NarI GGCGCC 1 cut(s) 527
NciI CCSGG 7 cut(s) 157, 436, 487, 488, 506, 507, 581
NcoI CCATGG 2 cut(s) 149, 172
NdeII GATC 6 cut(s) 331, 560, 583, 627, 654, 658
NlaIII CATG 4 cut(s) 153, 176, 338, 554
NlaIV GGNNCC 8 cut(s) 122, 123, 142, 194, 364, 439, 528, 570
NmuCI GTSAC 2 cut(s) 463, 589
NsiI ATGCAT 1 cut(s) 552
PasI CCCWGGG 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 667
PfeI GAWTC 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 150
PfoI TCCNGGA 1 cut(s) 579
PkrI GCNGC 1 cut(s) 634
Ple19I CGATCG 1 cut(s) 661
PleI GAGTC 3 cut(s) 299, 586, 619
PluTI GGCGCC 1 cut(s) 530
PpsI GAGTC 3 cut(s) 299, 586, 619
PpuMI RGGWCCY 1 cut(s) 362
Psp5II RGGWCCY 1 cut(s) 362
Psp6I CCWGG 3 cut(s) 136, 208, 214
PspGI CCWGG 3 cut(s) 136, 208, 214
PspN4I GGNNCC 8 cut(s) 122, 123, 142, 194, 364, 439, 528, 570
PspOMI GGGCCC 1 cut(s) 120
PspPI GGNCC 7 cut(s) 120, 121, 153, 212, 362, 438, 568
PspPPI RGGWCCY 1 cut(s) 362
PsuI RGATCY 2 cut(s) 560, 583
PvuI CGATCG 1 cut(s) 661
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 3 cut(s) 132, 142, 676
RsaNI GTAC 3 cut(s) 131, 141, 675
RseI CAYNNNNRTG 1 cut(s) 446
SatI GCNGC 1 cut(s) 633
Sau3AI GATC 6 cut(s) 331, 560, 583, 627, 654, 658
Sau96I GGNCC 7 cut(s) 120, 121, 153, 212, 362, 438, 568
SchI GAGTC 3 cut(s) 299, 586, 620
SduI GDGCHC 4 cut(s) 124, 207, 493, 754
SfaNI GCATC 3 cut(s) 275, 422, 775
SfoI GGCGCC 1 cut(s) 528
SinI GGWCC 2 cut(s) 362, 568
SmaI CCCGGG 2 cut(s) 488, 507
SmiMI CAYNNNNRTG 1 cut(s) 446
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SrfI GCCCGGGC 1 cut(s) 488
Sse9I AATT 1 cut(s) 97
SsiI CCGC 2 cut(s) 177, 694
SspDI GGCGCC 1 cut(s) 526
SspMI CTAG 2 cut(s) 111, 755
StyI CCWWGG 4 cut(s) 116, 149, 172, 564
TaaI ACNGT 1 cut(s) 432
TaqI TCGA 2 cut(s) 291, 657
TasI AATT 1 cut(s) 97
TfiI GAWTC 1 cut(s) 86
TseFI GTSAC 2 cut(s) 463, 589
TseI GCWGC 1 cut(s) 632
Tsp45I GTSAC 2 cut(s) 463, 589
TspDTI ATGAA 4 cut(s) 51, 464, 504, 744
TspGWI ACGGA 1 cut(s) 458
TspMI CCCGGG 2 cut(s) 486, 505
Van91I CCANNNNNTGG 1 cut(s) 150
VpaK11BI GGWCC 2 cut(s) 362, 568
XmaI CCCGGG 2 cut(s) 486, 505
XmiI GTMKAC 1 cut(s) 373
XspI CTAG 2 cut(s) 111, 755
Zsp2I ATGCAT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.