Rmu_sc0009255.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009255.1
OG0000633
Physical Location & Seq
Forward (+)
12569 .. 13178
610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009255.1_g000002.1.cds

Sequence Viewer

Length: 507 bp
atgaacgagccagaagtgacaggagagggtcgacgtgtcgctcgggcactgatattctctccgggaacttcatcagcagaagcgccaggtgttcaagaaatgcatggtctcggatccttggacccgatagtcccggatcaagtgactccggtatcggagttggagtctatgcgagctgagatcgcagccttaagggaacaatccaggatcgatcgggaacaacaaagtaccgatagggaaacaaaccgccttacgcaacagagaatgcaggatttggaagatgaaaacacagcgctaggatcaagtgacttcggtatcggaagaatgcaggatttggaagatgaaaacacagcgctggcccgagcactggacagaaggcaccagcacaacgaggcactcacccaggccctggatagagcatctcagctagcagcaggcatgaacgctgccccgataacaggagaccccagcaccaccccagcaccttatatggagggcggtcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.25

Weight (kDa)

4.51

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 378
AccB7I CCANNNNNTGG 1 cut(s) 409
AccI GTMKAC 1 cut(s) 31
AciI CCGC 2 cut(s) 247, 498
AclWI GGATC 5 cut(s) 108, 121, 144, 215, 307
AfaI GTAC 1 cut(s) 229
AfeI AGCGCT 2 cut(s) 294, 354
AfiI CCNNNNNNNGG 3 cut(s) 367, 409, 458
AflII CTTAAG 1 cut(s) 190
AflIII ACRYGT 1 cut(s) 34
AgsI TTSAA 1 cut(s) 95
AjiI CACGTC 1 cut(s) 35
AjnI CCWGG 4 cut(s) 85, 203, 402, 408
AluBI AGCT 2 cut(s) 176, 427
AluI AGCT 2 cut(s) 176, 427
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 2 cut(s) 113, 456
AlwI GGATC 5 cut(s) 108, 121, 144, 215, 307
AlwNI CAGNNNCTG 1 cut(s) 409
Ama87I CYCGRG 2 cut(s) 42, 360
Aor51HI AGCGCT 2 cut(s) 294, 354
AoxI GGCC 2 cut(s) 357, 405
ApeKI GCWGC 3 cut(s) 185, 431, 446
AspLEI GCGC 3 cut(s) 85, 295, 355
AspS9I GGNCC 3 cut(s) 121, 358, 406
AsuC2I CCSGG 2 cut(s) 63, 134
AsuHPI GGTGA 1 cut(s) 391
AsuNHI GCTAGC 1 cut(s) 427
AvaI CYCGRG 2 cut(s) 42, 360
AvaII GGWCC 1 cut(s) 121
BaeGI GKGCMC 1 cut(s) 49
BaeI ACNNNNGTAYC 4 cut(s) 135, 168, 298, 331
BamHI GGATCC 1 cut(s) 113
BanI GGYRCC 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 367
BbvI GCAGC 3 cut(s) 197, 433, 443
BciT130I CCWGG 4 cut(s) 87, 205, 404, 410
BcnI CCSGG 2 cut(s) 63, 134
BcoDI GTCTC 2 cut(s) 113, 456
BfaI CTAG 2 cut(s) 296, 428
BfoI RGCGCY 3 cut(s) 86, 296, 356
BfrI CTTAAG 1 cut(s) 190
BisI GCNGC 3 cut(s) 186, 432, 447
BlsI GCNGC 3 cut(s) 187, 433, 448
Bme1390I CCNGG 6 cut(s) 63, 87, 134, 205, 404, 410
Bme18I GGWCC 1 cut(s) 121
BmeT110I CYCGRG 2 cut(s) 42, 360
BmgBI CACGTC 1 cut(s) 35
BmgT120I GGNCC 3 cut(s) 121, 358, 406
BmiI GGNNCC 3 cut(s) 115, 123, 380
BmrFI CCNGG 6 cut(s) 63, 87, 134, 205, 404, 410
BmsI GCATC 1 cut(s) 428
BmtI GCTAGC 1 cut(s) 431
BpuMI CCSGG 2 cut(s) 63, 134
Bsa29I ATCGAT 1 cut(s) 210
BsaI GGTCTC 2 cut(s) 113, 456
BsaJI CCNNGG 3 cut(s) 117, 402, 408
BsaWI WCCGGW 1 cut(s) 148
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 3 cut(s) 367, 409, 458
Bse1I ACTGG 1 cut(s) 372
BseBI CCWGG 4 cut(s) 87, 205, 404, 410
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 3 cut(s) 117, 402, 408
BseLI CCNNNNNNNGG 3 cut(s) 367, 409, 458
BseMII CTCAG 2 cut(s) 168, 437
BseNI ACTGG 1 cut(s) 372
BseSI GKGCMC 1 cut(s) 49
BseXI GCAGC 3 cut(s) 197, 433, 443
BseYI CCCAGC 2 cut(s) 467, 478
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 2 cut(s) 359, 407
BshNI GGYRCC 1 cut(s) 378
BshVI ATCGAT 1 cut(s) 210
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 367
BsiHKCI CYCGRG 2 cut(s) 42, 360
BsiSI CCGG 3 cut(s) 62, 134, 149
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 3 cut(s) 367, 409, 458
BsmAI GTCTC 2 cut(s) 113, 456
BsmFI GGGAC 1 cut(s) 116
BsmI GAATGC 2 cut(s) 270, 330
BsnI GGCC 2 cut(s) 359, 407
Bso31I GGTCTC 2 cut(s) 113, 456
BsoBI CYCGRG 2 cut(s) 42, 360
Bsp1286I GDGCHC 2 cut(s) 49, 367
Bsp143I GATC 6 cut(s) 113, 136, 180, 207, 211, 299
BspACI CCGC 2 cut(s) 247, 498
BspANI GGCC 2 cut(s) 359, 407
BspCNI CTCAG 2 cut(s) 169, 436
BspDI ATCGAT 1 cut(s) 210
BspLI GGNNCC 3 cut(s) 115, 123, 380
BspOI GCTAGC 1 cut(s) 431
BspPI GGATC 5 cut(s) 108, 121, 144, 215, 307
BspT107I GGYRCC 1 cut(s) 378
BspTI CTTAAG 1 cut(s) 190
BspTNI GGTCTC 2 cut(s) 113, 456
BsrI ACTGG 1 cut(s) 372
BssECI CCNNGG 3 cut(s) 117, 402, 408
BssMI GATC 6 cut(s) 113, 136, 180, 207, 211, 299
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 4 cut(s) 87, 205, 404, 410
BstAFI CTTAAG 1 cut(s) 190
BstC8I GCNNGC 4 cut(s) 174, 357, 429, 436
BstDEI CTNAG 2 cut(s) 177, 423
BstH2I RGCGCY 3 cut(s) 86, 296, 356
BstHHI GCGC 3 cut(s) 85, 295, 355
BstKTI GATC 6 cut(s) 116, 139, 183, 210, 214, 302
BstMAI GTCTC 2 cut(s) 113, 456
BstMBI GATC 6 cut(s) 113, 136, 180, 207, 211, 299
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 4 cut(s) 87, 205, 404, 410
BstSCI CCNGG 6 cut(s) 61, 85, 132, 203, 402, 408
BstSLI GKGCMC 1 cut(s) 49
BstV1I GCAGC 3 cut(s) 197, 433, 443
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
Bsu15I ATCGAT 1 cut(s) 210
BsuRI GGCC 2 cut(s) 359, 407
BsuTUI ATCGAT 1 cut(s) 210
BtrI CACGTC 1 cut(s) 35
BtsIMutI CAGTG 2 cut(s) 47, 365
Cac8I GCNNGC 4 cut(s) 174, 357, 429, 436
CaiI CAGNNNCTG 1 cut(s) 409
CfoI GCGC 3 cut(s) 85, 295, 355
Cfr13I GGNCC 3 cut(s) 121, 358, 406
ClaI ATCGAT 1 cut(s) 210
Csp6I GTAC 1 cut(s) 228
CviAII CATG 2 cut(s) 104, 439
CviJI RGCY 6 cut(s) 10, 176, 188, 359, 407, 427
CviKI_1 RGCY 6 cut(s) 10, 176, 188, 359, 407, 427
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 2 cut(s) 177, 423
DpnI GATC 6 cut(s) 115, 138, 182, 209, 213, 301
DpnII GATC 6 cut(s) 113, 136, 180, 207, 211, 299
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 117
Eco31I GGTCTC 2 cut(s) 113, 456
Eco47I GGWCC 1 cut(s) 121
Eco47III AGCGCT 2 cut(s) 294, 354
Eco88I CYCGRG 2 cut(s) 42, 360
EcoO109I RGGNCCY 1 cut(s) 406
EcoRII CCWGG 4 cut(s) 85, 203, 402, 408
EcoT14I CCWWGG 1 cut(s) 117
EcoT22I ATGCAT 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 2 cut(s) 107, 442
FaiI YATR 5 cut(s) 105, 170, 440, 489, 491
FaqI GGGAC 1 cut(s) 116
FatI CATG 2 cut(s) 103, 438
FblI GTMKAC 1 cut(s) 31
Fnu4HI GCNGC 3 cut(s) 186, 432, 447
Fsp4HI GCNGC 3 cut(s) 186, 432, 447
FspBI CTAG 2 cut(s) 296, 428
GlaI GCGC 3 cut(s) 84, 294, 354
GluI GCNGC 3 cut(s) 186, 432, 447
GsaI CCCAGC 2 cut(s) 471, 482
HaeII RGCGCY 3 cut(s) 86, 296, 356
HaeIII GGCC 2 cut(s) 359, 407
HapII CCGG 3 cut(s) 62, 134, 149
HhaI GCGC 3 cut(s) 85, 295, 355
Hin1II CATG 2 cut(s) 107, 442
Hin6I GCGC 3 cut(s) 83, 293, 353
HinP1I GCGC 3 cut(s) 83, 293, 353
HincII GTYRAC 1 cut(s) 32
HindII GTYRAC 1 cut(s) 32
HinfI GANTC 2 cut(s) 145, 164
HpaII CCGG 3 cut(s) 62, 134, 149
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 3 cut(s) 113, 157, 320
Hpy188III TCNNGA 2 cut(s) 95, 215
Hpy8I GTNNAC 1 cut(s) 32
Hpy99I CGWCG 1 cut(s) 36
HpyAV CCTTC 1 cut(s) 369
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 3 cut(s) 103, 268, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 2 cut(s) 177, 423
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 2 cut(s) 107, 442
HspAI GCGC 3 cut(s) 83, 293, 353
Kzo9I GATC 6 cut(s) 113, 136, 180, 207, 211, 299
Lsp1109I GCAGC 3 cut(s) 197, 433, 443
LweI GCATC 1 cut(s) 428
MaeI CTAG 2 cut(s) 296, 428
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 3 cut(s) 16, 142, 305
MalI GATC 6 cut(s) 115, 138, 182, 209, 213, 301
MboI GATC 6 cut(s) 113, 136, 180, 207, 211, 299
MboII GAAGA 3 cut(s) 290, 333, 350
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 2 cut(s) 49, 367
MlyI GAGTC 2 cut(s) 139, 173
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 3 cut(s) 19, 385, 487
Mph1103I ATGCAT 1 cut(s) 105
MseI TTAA 1 cut(s) 191
MspCI CTTAAG 1 cut(s) 190
MspI CCGG 3 cut(s) 62, 134, 149
MspR9I CCNGG 6 cut(s) 63, 87, 134, 205, 404, 410
Mva1269I GAATGC 2 cut(s) 270, 330
MvaI CCWGG 4 cut(s) 87, 205, 404, 410
MwoI GCNNNNNNNGC 1 cut(s) 182
NciI CCSGG 2 cut(s) 63, 134
NdeII GATC 6 cut(s) 113, 136, 180, 207, 211, 299
NheI GCTAGC 1 cut(s) 427
NlaIII CATG 2 cut(s) 107, 442
NlaIV GGNNCC 3 cut(s) 115, 123, 380
NmuCI GTSAC 3 cut(s) 16, 142, 305
NsiI ATGCAT 1 cut(s) 105
PctI GAATGC 2 cut(s) 270, 330
PflMI CCANNNNNTGG 1 cut(s) 409
PfoI TCCNGGA 3 cut(s) 61, 132, 203
PkrI GCNGC 3 cut(s) 187, 433, 448
Ple19I CGATCG 1 cut(s) 214
PleI GAGTC 2 cut(s) 139, 172
PpsI GAGTC 2 cut(s) 139, 172
Psp6I CCWGG 4 cut(s) 85, 203, 402, 408
PspFI CCCAGC 2 cut(s) 467, 478
PspGI CCWGG 4 cut(s) 85, 203, 402, 408
PspN4I GGNNCC 3 cut(s) 115, 123, 380
PspPI GGNCC 3 cut(s) 121, 358, 406
PstNI CAGNNNCTG 1 cut(s) 409
PsuI RGATCY 1 cut(s) 113
PvuI CGATCG 1 cut(s) 214
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
SalI GTCGAC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 3 cut(s) 186, 432, 447
Sau3AI GATC 6 cut(s) 113, 136, 180, 207, 211, 299
Sau96I GGNCC 3 cut(s) 121, 358, 406
SchI GAGTC 2 cut(s) 139, 173
ScrFI CCNGG 6 cut(s) 63, 87, 134, 205, 404, 410
SduI GDGCHC 2 cut(s) 49, 367
SetI ASST 5 cut(s) 37, 91, 178, 429, 487
SfaNI GCATC 1 cut(s) 428
SinI GGWCC 1 cut(s) 121
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
SsiI CCGC 2 cut(s) 247, 498
SspMI CTAG 2 cut(s) 296, 428
StyD4I CCNGG 6 cut(s) 61, 85, 132, 203, 402, 408
StyI CCWWGG 1 cut(s) 117
TaiI ACGT 1 cut(s) 37
TaqI TCGA 2 cut(s) 31, 210
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TscAI CASTG 2 cut(s) 54, 372
TseFI GTSAC 3 cut(s) 16, 142, 305
TseI GCWGC 3 cut(s) 185, 431, 446
Tsp45I GTSAC 3 cut(s) 16, 142, 305
TspDTI ATGAA 5 cut(s) 17, 60, 297, 357, 455
TspRI CASTG 2 cut(s) 54, 372
Van91I CCANNNNNTGG 1 cut(s) 409
Vha464I CTTAAG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 31
XspI CTAG 2 cut(s) 296, 428
Zsp2I ATGCAT 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.