Rmu_sc0000779.1_g000017

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000779.1
OG0000633
Physical Location & Seq
Reverse (-)
78427 .. 79946
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000779.1_g000017.1.cds

Sequence Viewer

Length: 1146 bp
atggttgaggatgaattggctctgaccctagaggaggggttcagatatgatgcaaattgggaacctatccccaaggttgagtgggacgttgaggagcctagagtgatcaagactgtggcctcactggaggctcagcctttaaagaggtcaatttcctatttgtcaattccggtttctactaataaaatgctaccctctattgttcaggcacccaagttggaattgaaggtactccatgagcatttaaagtacgcgtactatacatacaagggagtctcaactaggcttcacataagatgccaccccgggcacccagggcccggggcaaggccagcacagcccatctatctttacaaatacaagactgatatggcatcagaagaacctgtgtcccacatcgaggataggggagactcccttcccacgcttgaatataaagattatagcacaaccaccttggacgggagccgatcggtgccccaggcggatatgagtgagccagaagcgacaggtgaggggagaagtgtcgctcgggcacttgtattctccccgggaacttcatcagtagaggtgccagctgttcgggaggaaatccatggtctcggatccttggacccaatagtcccggatcaggtgactccggatttggaagatgaaaacacggcgctggcccgagcactagacaggaggcaccagcacaacgaggcacttactcaggccctggctagagcatcccagctagcagacctgaacgctgccccgataacaggaactaccaacaccgcaccaacacctcccacggagggcagccagaggttaatccaggtaccggtagacttattcccggaatgcttgagacatctaccaccaccaccgttaccacagccaacagttcacggtatcatgccggtacccgacgcaaacacagcattactggtacaaatgagcaactccttgcatgccctgcaggcaagggtacgggccacggaaaatagagacacttggagagctatgaacagttacgaggaccgcctggggcctttcacccaacaggttaggggagccattcgagcgaatacatcgaaaccactgaaaattgactatacgggagttggagatccctaccaacatctacaggctttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

381

Amino Acids

42.16

Weight (kDa)

5.56

Isoelectric Point (pI)

49.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 620
Acc65I GGTACC 2 cut(s) 826, 910
AccB1I GGYRCC 7 cut(s) 208, 309, 475, 571, 690, 826, 910
AccI GTMKAC 1 cut(s) 834
AccII CGCG 1 cut(s) 254
AccIII TCCGGA 1 cut(s) 640
AciI CCGC 3 cut(s) 485, 783, 1030
AclWI GGATC 4 cut(s) 600, 613, 636, 1112
AfaI GTAC 7 cut(s) 231, 251, 257, 828, 912, 939, 978
AfiI CCNNNNNNNGG 9 cut(s) 34, 320, 327, 400, 462, 631, 767, 803, 829
AflIII ACRYGT 1 cut(s) 252
AgeI ACCGGT 1 cut(s) 829
AgsI TTSAA 2 cut(s) 226, 431
AjnI CCWGG 5 cut(s) 313, 480, 720, 822, 1032
AluBI AGCT 3 cut(s) 578, 739, 1010
AluI AGCT 3 cut(s) 578, 739, 1010
Alw21I GWGCWC 1 cut(s) 679
Alw26I GTCTC 5 cut(s) 280, 405, 605, 850, 990
AlwI GGATC 4 cut(s) 600, 613, 636, 1112
AlwNI CAGNNNCTG 1 cut(s) 721
Ama87I CYCGRG 5 cut(s) 305, 320, 531, 550, 672
Aor13HI TCCGGA 1 cut(s) 640
AoxI GGCC 7 cut(s) 117, 317, 329, 669, 717, 981, 1037
ApaI GGGCCC 1 cut(s) 321
ApeKI GCWGC 2 cut(s) 755, 807
ArsI GACNNNNNNTTYG 2 cut(s) 628, 660
AsiGI ACCGGT 1 cut(s) 829
Asp718I GGTACC 2 cut(s) 826, 910
AspLEI GCGC 1 cut(s) 667
AspS9I GGNCC 8 cut(s) 317, 318, 613, 670, 718, 981, 1027, 1037
AsuC2I CCSGG 8 cut(s) 306, 307, 321, 322, 551, 552, 626, 845
AsuHPI GGTGA 3 cut(s) 524, 646, 1036
AsuNHI GCTAGC 1 cut(s) 739
AvaI CYCGRG 5 cut(s) 305, 320, 531, 550, 672
AvaII GGWCC 2 cut(s) 613, 1027
BaeGI GKGCMC 4 cut(s) 312, 321, 480, 538
BamHI GGATCC 1 cut(s) 605
BanI GGYRCC 7 cut(s) 208, 309, 475, 571, 690, 826, 910
BanII GRGCYC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 679
BbvI GCAGC 2 cut(s) 742, 819
BccI CCATC 1 cut(s) 350
BceAI ACGGC 1 cut(s) 678
BciT130I CCWGG 5 cut(s) 315, 482, 722, 824, 1034
BclI TGATCA 1 cut(s) 105
BcnI CCSGG 8 cut(s) 306, 307, 321, 322, 551, 552, 626, 845
BcoDI GTCTC 5 cut(s) 280, 405, 605, 850, 990
BfaI CTAG 6 cut(s) 29, 99, 282, 680, 726, 740
BfmI CTRYAG 2 cut(s) 965, 1133
BfoI RGCGCY 1 cut(s) 668
BglI GCCNNNNNGGC 1 cut(s) 968
BisI GCNGC 2 cut(s) 756, 808
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 2 cut(s) 757, 809
Bme18I GGWCC 2 cut(s) 613, 1027
BmeT110I CYCGRG 5 cut(s) 305, 320, 531, 550, 672
BmgT120I GGNCC 8 cut(s) 317, 318, 613, 670, 718, 981, 1027, 1037
BmsI GCATC 4 cut(s) 40, 287, 383, 740
BmtI GCTAGC 1 cut(s) 743
BpmI CTGGAG 1 cut(s) 146
Bpu1102I GCTNAGC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 874
BpuMI CCSGG 8 cut(s) 306, 307, 321, 322, 551, 552, 626, 845
BsaI GGTCTC 1 cut(s) 605
BsaWI WCCGGW 3 cut(s) 169, 640, 829
Bsc4I CCNNNNNNNGG 9 cut(s) 34, 320, 327, 400, 462, 631, 767, 803, 829
Bse118I RCCGGY 2 cut(s) 829, 907
Bse1I ACTGG 2 cut(s) 129, 939
BseAI TCCGGA 1 cut(s) 640
BseBI CCWGG 5 cut(s) 315, 482, 722, 824, 1034
BseGI GGATG 2 cut(s) 16, 731
BseLI CCNNNNNNNGG 9 cut(s) 34, 320, 327, 400, 462, 631, 767, 803, 829
BseMII CTCAG 2 cut(s) 146, 728
BseNI ACTGG 2 cut(s) 129, 939
BseRI GAGGAG 2 cut(s) 47, 107
BseSI GKGCMC 4 cut(s) 312, 321, 480, 538
BseXI GCAGC 2 cut(s) 742, 819
BseYI CCCAGC 1 cut(s) 735
Bsh1236I CGCG 1 cut(s) 254
Bsh1285I CGRYCG 1 cut(s) 473
BshFI GGCC 7 cut(s) 119, 319, 331, 671, 719, 983, 1039
BshNI GGYRCC 7 cut(s) 208, 309, 475, 571, 690, 826, 910
BshTI ACCGGT 1 cut(s) 829
BsiEI CGRYCG 1 cut(s) 473
BsiHKAI GWGCWC 1 cut(s) 679
BsiHKCI CYCGRG 5 cut(s) 305, 320, 531, 550, 672
BsiSI CCGG 9 cut(s) 170, 306, 321, 551, 626, 641, 830, 845, 908
BslFI GGGAC 3 cut(s) 98, 376, 608
BslI CCNNNNNNNGG 9 cut(s) 34, 320, 327, 400, 462, 631, 767, 803, 829
BsmAI GTCTC 5 cut(s) 280, 405, 605, 850, 990
BsmFI GGGAC 3 cut(s) 98, 376, 608
BsmI GAATGC 1 cut(s) 854
BsnI GGCC 7 cut(s) 119, 319, 331, 671, 719, 983, 1039
Bso31I GGTCTC 1 cut(s) 605
BsoBI CYCGRG 5 cut(s) 305, 320, 531, 550, 672
Bsp120I GGGCCC 1 cut(s) 317
Bsp1286I GDGCHC 5 cut(s) 312, 321, 480, 538, 679
Bsp13I TCCGGA 1 cut(s) 640
Bsp143I GATC 5 cut(s) 105, 470, 605, 628, 1117
Bsp1720I GCTNAGC 1 cut(s) 132
Bsp19I CCATGG 1 cut(s) 595
BspACI CCGC 3 cut(s) 485, 783, 1030
BspANI GGCC 7 cut(s) 119, 319, 331, 671, 719, 983, 1039
BspCNI CTCAG 2 cut(s) 145, 727
BspEI TCCGGA 1 cut(s) 640
BspFNI CGCG 1 cut(s) 254
BspMAI CTGCAG 1 cut(s) 969
BspOI GCTAGC 1 cut(s) 743
BspPI GGATC 4 cut(s) 600, 613, 636, 1112
BspT107I GGYRCC 7 cut(s) 208, 309, 475, 571, 690, 826, 910
BspTNI GGTCTC 1 cut(s) 605
BsrFI RCCGGY 2 cut(s) 829, 907
BsrI ACTGG 2 cut(s) 129, 939
BssAI RCCGGY 2 cut(s) 829, 907
BssMI GATC 5 cut(s) 105, 470, 605, 628, 1117
BssT1I CCWWGG 4 cut(s) 72, 456, 595, 609
Bst2UI CCWGG 5 cut(s) 315, 482, 722, 824, 1034
Bst4CI ACNGT 5 cut(s) 115, 876, 892, 899, 1019
BstAPI GCANNNNNTGC 1 cut(s) 964
BstC8I GCNNGC 6 cut(s) 333, 576, 669, 741, 960, 969
BstDEI CTNAG 2 cut(s) 132, 714
BstDSI CCRYGG 3 cut(s) 595, 798, 984
BstENI CCTNNNNNAGG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 16, 731
BstFNI CGCG 1 cut(s) 254
BstH2I RGCGCY 1 cut(s) 668
BstHHI GCGC 1 cut(s) 667
BstKTI GATC 5 cut(s) 108, 473, 608, 631, 1120
BstMAI GTCTC 5 cut(s) 280, 405, 605, 850, 990
BstMBI GATC 5 cut(s) 105, 470, 605, 628, 1117
BstMCI CGRYCG 1 cut(s) 473
BstMWI GCNNNNNNNGC 7 cut(s) 316, 332, 337, 926, 964, 968, 1070
BstNI CCWGG 5 cut(s) 315, 482, 722, 824, 1034
BstNSI RCATGY 1 cut(s) 962
BstSFI CTRYAG 2 cut(s) 965, 1133
BstSLI GKGCMC 4 cut(s) 312, 321, 480, 538
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 2 cut(s) 742, 819
BstX2I RGATCY 2 cut(s) 605, 1117
BstYI RGATCY 2 cut(s) 605, 1117
BsuRI GGCC 7 cut(s) 119, 319, 331, 671, 719, 983, 1039
BtgI CCRYGG 3 cut(s) 595, 798, 984
BtsCI GGATG 2 cut(s) 16, 731
BtsIMutI CAGTG 2 cut(s) 122, 1088
Cac8I GCNNGC 6 cut(s) 333, 576, 669, 741, 960, 969
CaiI CAGNNNCTG 1 cut(s) 721
CfoI GCGC 1 cut(s) 667
Cfr10I RCCGGY 2 cut(s) 829, 907
Cfr13I GGNCC 8 cut(s) 317, 318, 613, 670, 718, 981, 1027, 1037
Cfr9I CCCGGG 3 cut(s) 305, 320, 550
CseI GACGC 1 cut(s) 926
Csp6I GTAC 7 cut(s) 230, 250, 256, 827, 911, 938, 977
CspAI ACCGGT 1 cut(s) 829
CviAII CATG 4 cut(s) 236, 596, 904, 959
CviQI GTAC 7 cut(s) 230, 250, 256, 827, 911, 938, 977
DdeI CTNAG 2 cut(s) 132, 714
DpnI GATC 5 cut(s) 107, 472, 607, 630, 1119
DpnII GATC 5 cut(s) 105, 470, 605, 628, 1117
DraI TTTAAA 2 cut(s) 141, 246
DrdI GACNNNNNNGTC 1 cut(s) 620
DseDI GACNNNNNNGTC 1 cut(s) 620
EciI GGCGGA 1 cut(s) 500
Eco130I CCWWGG 4 cut(s) 72, 456, 595, 609
Eco24I GRGCYC 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 605
Eco47I GGWCC 2 cut(s) 613, 1027
Eco88I CYCGRG 5 cut(s) 305, 320, 531, 550, 672
EcoNI CCTNNNNNAGG 1 cut(s) 32
EcoO109I RGGNCCY 3 cut(s) 317, 718, 1037
EcoRII CCWGG 5 cut(s) 313, 480, 720, 822, 1032
EcoT14I CCWWGG 4 cut(s) 72, 456, 595, 609
EcoT38I GRGCYC 1 cut(s) 321
ErhI CCWWGG 4 cut(s) 72, 456, 595, 609
FaeI CATG 4 cut(s) 239, 599, 907, 962
FaqI GGGAC 3 cut(s) 98, 376, 608
FatI CATG 4 cut(s) 235, 595, 903, 958
FbaI TGATCA 1 cut(s) 105
FblI GTMKAC 1 cut(s) 834
Fnu4HI GCNGC 2 cut(s) 756, 808
FokI GGATG 2 cut(s) 23, 718
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 2 cut(s) 756, 808
FspBI CTAG 6 cut(s) 29, 99, 282, 680, 726, 740
GlaI GCGC 1 cut(s) 666
GluI GCNGC 2 cut(s) 756, 808
GsaI CCCAGC 1 cut(s) 739
GsuI CTGGAG 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 668
HaeIII GGCC 7 cut(s) 119, 319, 331, 671, 719, 983, 1039
HapII CCGG 9 cut(s) 170, 306, 321, 551, 626, 641, 830, 845, 908
HgaI GACGC 1 cut(s) 926
HhaI GCGC 1 cut(s) 667
Hin1II CATG 4 cut(s) 239, 599, 907, 962
Hin6I GCGC 1 cut(s) 665
HinP1I GCGC 1 cut(s) 665
HinfI GANTC 3 cut(s) 273, 413, 637
HpaII CCGG 9 cut(s) 170, 306, 321, 551, 626, 641, 830, 845, 908
HphI GGTGA 3 cut(s) 524, 646, 1036
Hpy166II GTNNAC 2 cut(s) 835, 895
Hpy188I TCNGA 5 cut(s) 24, 44, 379, 605, 1145
Hpy188III TCNNGA 3 cut(s) 109, 584, 641
Hpy8I GTNNAC 2 cut(s) 835, 895
Hpy99I CGWCG 1 cut(s) 920
HpyAV CCTTC 2 cut(s) 220, 428
HpyCH4III ACNGT 5 cut(s) 115, 876, 892, 899, 1019
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 3 cut(s) 53, 958, 967
HpyF10VI GCNNNNNNNGC 7 cut(s) 316, 332, 337, 926, 964, 968, 1070
HpyF3I CTNAG 2 cut(s) 132, 714
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 4 cut(s) 239, 599, 907, 962
HspAI GCGC 1 cut(s) 665
Kpn2I TCCGGA 1 cut(s) 640
KpnI GGTACC 2 cut(s) 830, 914
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 5 cut(s) 105, 470, 605, 628, 1117
LmnI GCTCC 3 cut(s) 94, 465, 1061
Lsp1109I GCAGC 2 cut(s) 742, 819
LweI GCATC 4 cut(s) 40, 287, 383, 740
MaeI CTAG 6 cut(s) 29, 99, 282, 680, 726, 740
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 3 cut(s) 634, 876, 1019
MalI GATC 5 cut(s) 107, 472, 607, 630, 1119
MboI GATC 5 cut(s) 105, 470, 605, 628, 1117
MboII GAAGA 2 cut(s) 392, 662
MflI RGATCY 2 cut(s) 605, 1117
MhlI GDGCHC 5 cut(s) 312, 321, 480, 538, 679
MluCI AATT 6 cut(s) 14, 55, 150, 165, 221, 1095
MluI ACGCGT 1 cut(s) 252
MlyI GAGTC 3 cut(s) 282, 407, 631
MmeI TCCRAC 2 cut(s) 198, 1093
MroI TCCGGA 1 cut(s) 640
MseI TTAA 3 cut(s) 140, 245, 818
MspA1I CMGCKG 1 cut(s) 578
MspI CCGG 9 cut(s) 170, 306, 321, 551, 626, 641, 830, 845, 908
Mva1269I GAATGC 1 cut(s) 854
MvaI CCWGG 5 cut(s) 315, 482, 722, 824, 1034
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 7 cut(s) 316, 332, 337, 926, 964, 968, 1070
NciI CCSGG 8 cut(s) 306, 307, 321, 322, 551, 552, 626, 845
NcoI CCATGG 1 cut(s) 595
NdeII GATC 5 cut(s) 105, 470, 605, 628, 1117
NheI GCTAGC 1 cut(s) 739
NlaIII CATG 4 cut(s) 239, 599, 907, 962
NmuCI GTSAC 1 cut(s) 634
NspI RCATGY 1 cut(s) 962
PaeI GCATGC 1 cut(s) 962
PasI CCCWGGG 1 cut(s) 314
PctI GAATGC 1 cut(s) 854
PfoI TCCNGGA 2 cut(s) 624, 843
PinAI ACCGGT 1 cut(s) 829
PkrI GCNGC 2 cut(s) 757, 809
Ple19I CGATCG 1 cut(s) 473
PleI GAGTC 3 cut(s) 281, 407, 631
PpsI GAGTC 3 cut(s) 281, 407, 631
Psp6I CCWGG 5 cut(s) 313, 480, 720, 822, 1032
PspFI CCCAGC 1 cut(s) 735
PspGI CCWGG 5 cut(s) 313, 480, 720, 822, 1032
PspOMI GGGCCC 1 cut(s) 317
PspPI GGNCC 8 cut(s) 317, 318, 613, 670, 718, 981, 1027, 1037
PstI CTGCAG 1 cut(s) 969
PstNI CAGNNNCTG 1 cut(s) 721
PsuI RGATCY 2 cut(s) 605, 1117
PvuI CGATCG 1 cut(s) 473
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 7 cut(s) 231, 251, 257, 828, 912, 939, 978
RsaNI GTAC 7 cut(s) 230, 250, 256, 827, 911, 938, 977
SaqAI TTAA 3 cut(s) 140, 245, 818
SatI GCNGC 2 cut(s) 756, 808
Sau3AI GATC 5 cut(s) 105, 470, 605, 628, 1117
Sau96I GGNCC 8 cut(s) 317, 318, 613, 670, 718, 981, 1027, 1037
SbfI CCTGCAGG 1 cut(s) 969
SchI GAGTC 3 cut(s) 282, 407, 631
SdaI CCTGCAGG 1 cut(s) 969
SduI GDGCHC 5 cut(s) 312, 321, 480, 538, 679
SfaNI GCATC 4 cut(s) 40, 287, 383, 740
SfcI CTRYAG 2 cut(s) 965, 1133
SinI GGWCC 2 cut(s) 613, 1027
SmaI CCCGGG 3 cut(s) 307, 322, 552
SmlI CTYRAG 1 cut(s) 853
SmoI CTYRAG 1 cut(s) 853
SphI GCATGC 1 cut(s) 962
Sse8387I CCTGCAGG 1 cut(s) 969
Sse9I AATT 6 cut(s) 14, 55, 150, 165, 221, 1095
SsiI CCGC 3 cut(s) 485, 783, 1030
SspMI CTAG 6 cut(s) 29, 99, 282, 680, 726, 740
StyI CCWWGG 4 cut(s) 72, 456, 595, 609
TaaI ACNGT 5 cut(s) 115, 876, 892, 899, 1019
TaiI ACGT 1 cut(s) 90
TaqI TCGA 3 cut(s) 399, 1069, 1082
TasI AATT 6 cut(s) 14, 55, 150, 165, 221, 1095
Tru1I TTAA 3 cut(s) 140, 245, 818
Tru9I TTAA 3 cut(s) 140, 245, 818
TscAI CASTG 2 cut(s) 129, 1095
TseFI GTSAC 1 cut(s) 634
TseI GCWGC 2 cut(s) 755, 807
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 4 cut(s) 27, 549, 669, 1028
TspGWI ACGGA 2 cut(s) 815, 1001
TspMI CCCGGG 3 cut(s) 305, 320, 550
TspRI CASTG 2 cut(s) 129, 1095
VpaK11BI GGWCC 2 cut(s) 613, 1027
XagI CCTNNNNNAGG 1 cut(s) 32
XceI RCATGY 1 cut(s) 962
XmaI CCCGGG 3 cut(s) 305, 320, 550
XmiI GTMKAC 1 cut(s) 834
XspI CTAG 6 cut(s) 29, 99, 282, 680, 726, 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.