Rmu_sc0035796.1_g000001

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035796.1
OG0000633
Physical Location & Seq
Forward (+)
1 .. 883
883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035796.1_g000001.1.cds

Sequence Viewer

Length: 556 bp
gaggggcctaaggcgaggagaatttctctacgggatcaaccataatcctccagctagctacgacgaactgatggccaccgctatcagacatgctcaggccgaattcgaaacatacggagacacgcccagaccagagctaagattttccacactgacttcgactattagggatgagccacgaaagagggagtggaggggcaagctccaacggtacctacctgctaaggagataggagcggtcgacttatacggccagatattcacgatccacggttggggtccgaaagagtcgcccgccaagggaaagaaacgaaattctagtttcggccgtccggaagttttcaacttccaccaagccccgcagcaaaatagtggcaccaagtggacatcggtgacattcctgcaggaggaggaagtcgatctgaggatgccccatgatgatcccttcctaatcacactccaaatggaccactacataatgtccagggtgctcatagacaccggggcctcggttagcgtattatttcgtgctcatagacacccgggcctcggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

184

Amino Acids

21.12

Weight (kDa)

9.22

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 227
Acc65I GGTACC 1 cut(s) 211
AccB1I GGYRCC 2 cut(s) 211, 375
AccBSI CCGCTC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 241
AccIII TCCGGA 1 cut(s) 332
AciI CCGC 4 cut(s) 79, 237, 295, 360
AclWI GGATC 3 cut(s) 42, 260, 435
AcoI YGGCCR 3 cut(s) 73, 251, 326
AcsI RAATTY 3 cut(s) 21, 102, 314
AdeI CACNNNGTG 1 cut(s) 382
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 4 cut(s) 275, 300, 407, 549
AgsI TTSAA 1 cut(s) 344
AjnI CCWGG 1 cut(s) 483
AluBI AGCT 4 cut(s) 54, 58, 137, 203
AluI AGCT 4 cut(s) 54, 58, 137, 203
Alw21I GWGCWC 2 cut(s) 493, 533
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 3 cut(s) 42, 260, 435
Ama87I CYCGRG 1 cut(s) 542
Aor13HI TCCGGA 1 cut(s) 332
AoxI GGCC 7 cut(s) 5, 73, 97, 251, 326, 505, 545
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 3 cut(s) 21, 102, 314
Asp718I GGTACC 1 cut(s) 211
AspS9I GGNCC 5 cut(s) 5, 279, 467, 505, 545
AsuC2I CCSGG 3 cut(s) 503, 543, 544
AsuHPI GGTGA 1 cut(s) 404
AsuII TTCGAA 1 cut(s) 106
AsuNHI GCTAGC 1 cut(s) 54
AvaI CYCGRG 1 cut(s) 542
AvaII GGWCC 2 cut(s) 279, 467
AxyI CCTNAGG 1 cut(s) 9
BalI TGGCCA 1 cut(s) 75
BanI GGYRCC 2 cut(s) 211, 375
Bbv12I GWGCWC 2 cut(s) 493, 533
BbvI GCAGC 1 cut(s) 374
BccI CCATC 1 cut(s) 65
BceAI ACGGC 2 cut(s) 266, 313
BciT130I CCWGG 1 cut(s) 485
BcnI CCSGG 3 cut(s) 503, 543, 544
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 2 cut(s) 55, 319
BfmI CTRYAG 1 cut(s) 402
BfuAI ACCTGC 1 cut(s) 227
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
Bme1390I CCNGG 4 cut(s) 485, 503, 543, 544
Bme18I GGWCC 2 cut(s) 279, 467
BmeT110I CYCGRG 1 cut(s) 542
BmgT120I GGNCC 5 cut(s) 5, 279, 467, 505, 545
BmiI GGNNCC 5 cut(s) 6, 213, 280, 377, 506
BmrFI CCNGG 4 cut(s) 485, 503, 543, 544
BmsI GCATC 1 cut(s) 418
BmtI GCTAGC 1 cut(s) 58
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpmI CTGGAG 1 cut(s) 34
Bpu10I CCTNAGC 2 cut(s) 94, 223
Bpu14I TTCGAA 1 cut(s) 106
BpuMI CCSGG 3 cut(s) 503, 543, 544
BsaJI CCNNGG 7 cut(s) 269, 298, 484, 502, 508, 542, 548
BsaWI WCCGGW 1 cut(s) 332
Bsc4I CCNNNNNNNGG 4 cut(s) 275, 300, 407, 549
Bse21I CCTNAGG 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 332
BseBI CCWGG 1 cut(s) 485
BseDI CCNNGG 7 cut(s) 269, 298, 484, 502, 508, 542, 548
BseGI GGATG 2 cut(s) 176, 433
BseLI CCNNNNNNNGG 4 cut(s) 275, 300, 407, 549
BseMII CTCAG 2 cut(s) 108, 414
BseRI GAGGAG 2 cut(s) 31, 423
BseX3I CGGCCG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 374
Bsh1285I CGRYCG 2 cut(s) 241, 329
BshFI GGCC 7 cut(s) 7, 75, 99, 253, 328, 507, 547
BshNI GGYRCC 2 cut(s) 211, 375
BsiEI CGRYCG 2 cut(s) 241, 329
BsiHKAI GWGCWC 2 cut(s) 493, 533
BsiHKCI CYCGRG 1 cut(s) 542
BsiSI CCGG 3 cut(s) 333, 502, 543
BslI CCNNNNNNNGG 4 cut(s) 275, 300, 407, 549
BsmAI GTCTC 1 cut(s) 112
BsnI GGCC 7 cut(s) 7, 75, 99, 253, 328, 507, 547
BsoBI CYCGRG 1 cut(s) 542
Bsp119I TTCGAA 1 cut(s) 106
Bsp1286I GDGCHC 2 cut(s) 493, 533
Bsp13I TCCGGA 1 cut(s) 332
Bsp143I GATC 4 cut(s) 34, 265, 419, 440
BspACI CCGC 4 cut(s) 79, 237, 295, 360
BspANI GGCC 7 cut(s) 7, 75, 99, 253, 328, 507, 547
BspCNI CTCAG 2 cut(s) 107, 415
BspEI TCCGGA 1 cut(s) 332
BspLI GGNNCC 5 cut(s) 6, 213, 280, 377, 506
BspMAI CTGCAG 1 cut(s) 406
BspMI ACCTGC 1 cut(s) 227
BspOI GCTAGC 1 cut(s) 58
BspPI GGATC 3 cut(s) 42, 260, 435
BspT104I TTCGAA 1 cut(s) 106
BspT107I GGYRCC 2 cut(s) 211, 375
BsrBI CCGCTC 1 cut(s) 237
BssECI CCNNGG 7 cut(s) 269, 298, 484, 502, 508, 542, 548
BssMI GATC 4 cut(s) 34, 265, 419, 440
BssT1I CCWWGG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 2 cut(s) 211, 273
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 3 cut(s) 56, 201, 295
BstDEI CTNAG 5 cut(s) 9, 94, 138, 223, 423
BstDSI CCRYGG 1 cut(s) 269
BstENI CCTNNNNNAGG 1 cut(s) 405
BstF5I GGATG 2 cut(s) 176, 433
BstKTI GATC 4 cut(s) 37, 268, 422, 443
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 4 cut(s) 34, 265, 419, 440
BstMCI CGRYCG 2 cut(s) 241, 329
BstNI CCWGG 1 cut(s) 485
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 4 cut(s) 483, 501, 541, 542
BstSFI CTRYAG 1 cut(s) 402
BstV1I GCAGC 1 cut(s) 374
BstZI CGGCCG 1 cut(s) 326
Bsu36I CCTNAGG 1 cut(s) 9
BsuRI GGCC 7 cut(s) 7, 75, 99, 253, 328, 507, 547
BtgI CCRYGG 1 cut(s) 269
BtsCI GGATG 2 cut(s) 176, 433
BtsIMutI CAGTG 1 cut(s) 150
BveI ACCTGC 1 cut(s) 227
Cac8I GCNNGC 3 cut(s) 56, 201, 295
Cfr13I GGNCC 5 cut(s) 5, 279, 467, 505, 545
Cfr9I CCCGGG 1 cut(s) 542
Csp6I GTAC 1 cut(s) 212
CviAII CATG 2 cut(s) 90, 435
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 5 cut(s) 9, 94, 138, 223, 423
DpnI GATC 4 cut(s) 36, 267, 421, 442
DpnII GATC 4 cut(s) 34, 265, 419, 440
DraIII CACNNNGTG 1 cut(s) 382
EaeI YGGCCR 3 cut(s) 73, 251, 326
EagI CGGCCG 1 cut(s) 326
EclXI CGGCCG 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 298
Eco47I GGWCC 2 cut(s) 279, 467
Eco52I CGGCCG 1 cut(s) 326
Eco81I CCTNAGG 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 542
EcoNI CCTNNNNNAGG 1 cut(s) 405
EcoO109I RGGNCCY 2 cut(s) 5, 505
EcoRI GAATTC 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 2 cut(s) 93, 438
FaiI YATR 8 cut(s) 43, 91, 113, 248, 436, 477, 495, 535
FatI CATG 2 cut(s) 89, 434
FauI CCCGC 2 cut(s) 302, 367
FblI GTMKAC 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 2 cut(s) 183, 440
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 2 cut(s) 55, 319
GluI GCNGC 1 cut(s) 363
GsuI CTGGAG 1 cut(s) 34
HaeIII GGCC 7 cut(s) 7, 75, 99, 253, 328, 507, 547
HapII CCGG 3 cut(s) 333, 502, 543
Hin1II CATG 2 cut(s) 93, 438
HincII GTYRAC 1 cut(s) 242
HindII GTYRAC 1 cut(s) 242
HinfI GANTC 1 cut(s) 288
HpaII CCGG 3 cut(s) 333, 502, 543
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 2 cut(s) 242, 385
Hpy188I TCNGA 3 cut(s) 87, 283, 424
Hpy188III TCNNGA 2 cut(s) 263, 333
Hpy8I GTNNAC 2 cut(s) 242, 385
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 1 cut(s) 455
HpyCH4III ACNGT 2 cut(s) 211, 273
HpyCH4V TGCA 1 cut(s) 404
HpyF3I CTNAG 5 cut(s) 9, 94, 138, 223, 423
Hsp92II CATG 2 cut(s) 93, 438
Kpn2I TCCGGA 1 cut(s) 332
KpnI GGTACC 1 cut(s) 215
Kzo9I GATC 4 cut(s) 34, 265, 419, 440
LmnI GCTCC 2 cut(s) 208, 234
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 1 cut(s) 418
MaeI CTAG 2 cut(s) 55, 319
MaeIII GTNAC 1 cut(s) 392
MalI GATC 4 cut(s) 36, 267, 421, 442
MbiI CCGCTC 1 cut(s) 237
MboI GATC 4 cut(s) 34, 265, 419, 440
MhlI GDGCHC 2 cut(s) 493, 533
MlsI TGGCCA 1 cut(s) 75
MluCI AATT 3 cut(s) 21, 102, 314
MluNI TGGCCA 1 cut(s) 75
MlyI GAGTC 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 8 cut(s) 9, 58, 178, 187, 401, 404, 418, 518
Mox20I TGGCCA 1 cut(s) 75
MroI TCCGGA 1 cut(s) 332
MscI TGGCCA 1 cut(s) 75
Msp20I TGGCCA 1 cut(s) 75
MspI CCGG 3 cut(s) 333, 502, 543
MspR9I CCNGG 4 cut(s) 485, 503, 543, 544
MvaI CCWGG 1 cut(s) 485
NciI CCSGG 3 cut(s) 503, 543, 544
NdeII GATC 4 cut(s) 34, 265, 419, 440
NheI GCTAGC 1 cut(s) 54
NlaIII CATG 2 cut(s) 93, 438
NlaIV GGNNCC 5 cut(s) 6, 213, 280, 377, 506
NmuCI GTSAC 1 cut(s) 392
NspI RCATGY 1 cut(s) 93
NspV TTCGAA 1 cut(s) 106
PkrI GCNGC 1 cut(s) 364
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Psp6I CCWGG 1 cut(s) 483
PspGI CCWGG 1 cut(s) 483
PspN4I GGNNCC 5 cut(s) 6, 213, 280, 377, 506
PspPI GGNCC 5 cut(s) 5, 279, 467, 505, 545
PstI CTGCAG 1 cut(s) 406
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SalI GTCGAC 1 cut(s) 240
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 4 cut(s) 34, 265, 419, 440
Sau96I GGNCC 5 cut(s) 5, 279, 467, 505, 545
SbfI CCTGCAGG 1 cut(s) 406
SchI GAGTC 1 cut(s) 297
ScrFI CCNGG 4 cut(s) 485, 503, 543, 544
SdaI CCTGCAGG 1 cut(s) 406
SduI GDGCHC 2 cut(s) 493, 533
SetI ASST 6 cut(s) 56, 60, 139, 205, 217, 221
SfaNI GCATC 1 cut(s) 418
SfcI CTRYAG 1 cut(s) 402
SfuI TTCGAA 1 cut(s) 106
SinI GGWCC 2 cut(s) 279, 467
SmaI CCCGGG 1 cut(s) 544
Sse8387I CCTGCAGG 1 cut(s) 406
Sse9I AATT 3 cut(s) 21, 102, 314
SsiI CCGC 4 cut(s) 79, 237, 295, 360
SspMI CTAG 2 cut(s) 55, 319
StyD4I CCNGG 4 cut(s) 483, 501, 541, 542
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 2 cut(s) 211, 273
TaqI TCGA 4 cut(s) 106, 159, 241, 418
TasI AATT 3 cut(s) 21, 102, 314
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 392
TspGWI ACGGA 1 cut(s) 130
TspMI CCCGGG 1 cut(s) 542
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 2 cut(s) 279, 467
XagI CCTNNNNNAGG 1 cut(s) 405
XapI RAATTY 3 cut(s) 21, 102, 314
XceI RCATGY 1 cut(s) 93
XmaI CCCGGG 1 cut(s) 542
XmiI GTMKAC 1 cut(s) 241
XspI CTAG 2 cut(s) 55, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.