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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 472 |
| AccB1I | GGYRCC | 1 cut(s) | 339 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 370 |
| AccBSI | CCGCTC | 1 cut(s) | 197 |
| AccI | GTMKAC | 2 cut(s) | 449, 486 |
| AccIII | TCCGGA | 1 cut(s) | 682 |
| AciI | CCGC | 5 cut(s) | 146, 197, 268, 749, 788 |
| AclWI | GGATC | 1 cut(s) | 165 |
| AcsI | RAATTY | 1 cut(s) | 824 |
| AdeI | CACNNNGTG | 1 cut(s) | 762 |
| AfaI | GTAC | 1 cut(s) | 70 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 328, 370, 451, 778, 1006, 1056 |
| AflII | CTTAAG | 1 cut(s) | 811 |
| AgsI | TTSAA | 1 cut(s) | 545 |
| AjnI | CCWGG | 5 cut(s) | 44, 224, 369, 897, 1055 |
| AluBI | AGCT | 6 cut(s) | 167, 295, 504, 793, 871, 940 |
| AluI | AGCT | 6 cut(s) | 167, 295, 504, 793, 871, 940 |
| Alw21I | GWGCWC | 1 cut(s) | 328 |
| Alw26I | GTCTC | 1 cut(s) | 98 |
| AlwI | GGATC | 1 cut(s) | 165 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 295 |
| Ama87I | CYCGRG | 2 cut(s) | 321, 1027 |
| Aor13HI | TCCGGA | 1 cut(s) | 682 |
| AoxI | GGCC | 7 cut(s) | 150, 318, 424, 430, 630, 705, 957 |
| ApeKI | GCWGC | 1 cut(s) | 206 |
| ApoI | RAATTY | 1 cut(s) | 824 |
| AseI | ATTAAT | 1 cut(s) | 840 |
| AspLEI | GCGC | 1 cut(s) | 728 |
| AsuC2I | CCSGG | 6 cut(s) | 66, 429, 497, 652, 956, 1091 |
| AsuHPI | GGTGA | 5 cut(s) | 127, 352, 455, 1008, 1079 |
| AvaI | CYCGRG | 2 cut(s) | 321, 1027 |
| AvaII | GGWCC | 8 cut(s) | 106, 676, 685, 769, 997, 1009, 1059, 1074 |
| BaeGI | GKGCMC | 3 cut(s) | 52, 119, 613 |
| BanI | GGYRCC | 1 cut(s) | 339 |
| BanII | GRGCYC | 1 cut(s) | 661 |
| Bbv12I | GWGCWC | 1 cut(s) | 328 |
| BbvI | GCAGC | 1 cut(s) | 218 |
| BccI | CCATC | 1 cut(s) | 868 |
| BceAI | ACGGC | 2 cut(s) | 36, 897 |
| BciT130I | CCWGG | 5 cut(s) | 46, 226, 371, 899, 1057 |
| BclI | TGATCA | 1 cut(s) | 232 |
| BcnI | CCSGG | 6 cut(s) | 66, 429, 497, 652, 956, 1091 |
| BcoDI | GTCTC | 1 cut(s) | 98 |
| BfaI | CTAG | 2 cut(s) | 375, 785 |
| BfmI | CTRYAG | 4 cut(s) | 78, 287, 614, 701 |
| BfoI | RGCGCY | 1 cut(s) | 729 |
| BfrI | CTTAAG | 1 cut(s) | 811 |
| BfuAI | ACCTGC | 1 cut(s) | 472 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 617 |
| BisI | GCNGC | 2 cut(s) | 207, 750 |
| BlsI | GCNGC | 2 cut(s) | 208, 751 |
| Bme18I | GGWCC | 8 cut(s) | 106, 676, 685, 769, 997, 1009, 1059, 1074 |
| BmeT110I | CYCGRG | 2 cut(s) | 321, 1027 |
| BmiI | GGNNCC | 8 cut(s) | 108, 341, 427, 687, 770, 960, 998, 1075 |
| BmrI | ACTGGG | 1 cut(s) | 956 |
| BmsI | GCATC | 2 cut(s) | 389, 520 |
| BmuI | ACTGGG | 1 cut(s) | 956 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 813, 845 |
| Bpu10I | CCTNAGC | 1 cut(s) | 941 |
| BpuEI | CTTGAG | 1 cut(s) | 526 |
| BpuMI | CCSGG | 6 cut(s) | 66, 429, 497, 652, 956, 1091 |
| BsaI | GGTCTC | 1 cut(s) | 98 |
| BsaJI | CCNNGG | 7 cut(s) | 45, 153, 369, 427, 729, 897, 954 |
| BsaWI | WCCGGW | 4 cut(s) | 169, 412, 465, 682 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 170, 200 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 328, 370, 451, 778, 1006, 1056 |
| Bse1I | ACTGG | 4 cut(s) | 333, 539, 962, 1012 |
| Bse3DI | GCAATG | 1 cut(s) | 1048 |
| BseAI | TCCGGA | 1 cut(s) | 682 |
| BseBI | CCWGG | 5 cut(s) | 46, 226, 371, 899, 1057 |
| BseDI | CCNNGG | 7 cut(s) | 45, 153, 369, 427, 729, 897, 954 |
| BseGI | GGATG | 6 cut(s) | 380, 474, 748, 979, 1052, 1081 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 328, 370, 451, 778, 1006, 1056 |
| BseMI | GCAATG | 1 cut(s) | 1048 |
| BseMII | CTCAG | 1 cut(s) | 109 |
| BseNI | ACTGG | 4 cut(s) | 333, 539, 962, 1012 |
| BseRI | GAGGAG | 1 cut(s) | 817 |
| BseSI | GKGCMC | 3 cut(s) | 52, 119, 613 |
| BseXI | GCAGC | 1 cut(s) | 218 |
| BseYI | CCCAGC | 1 cut(s) | 138 |
| BsgI | GTGCAG | 1 cut(s) | 500 |
| Bsh1285I | CGRYCG | 1 cut(s) | 716 |
| BshFI | GGCC | 7 cut(s) | 152, 320, 426, 432, 632, 707, 959 |
| BshNI | GGYRCC | 1 cut(s) | 339 |
| BsiEI | CGRYCG | 1 cut(s) | 716 |
| BsiHKAI | GWGCWC | 1 cut(s) | 328 |
| BsiHKCI | CYCGRG | 2 cut(s) | 321, 1027 |
| BslFI | GGGAC | 4 cut(s) | 659, 782, 935, 1087 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 328, 370, 451, 778, 1006, 1056 |
| BsmAI | GTCTC | 1 cut(s) | 98 |
| BsmFI | GGGAC | 4 cut(s) | 659, 782, 935, 1087 |
| BsnI | GGCC | 7 cut(s) | 152, 320, 426, 432, 632, 707, 959 |
| Bso31I | GGTCTC | 1 cut(s) | 98 |
| BsoBI | CYCGRG | 2 cut(s) | 321, 1027 |
| Bsp1286I | GDGCHC | 5 cut(s) | 52, 119, 328, 613, 661 |
| Bsp13I | TCCGGA | 1 cut(s) | 682 |
| Bsp143I | GATC | 5 cut(s) | 157, 201, 232, 471, 713 |
| BspACI | CCGC | 5 cut(s) | 146, 197, 268, 749, 788 |
| BspANI | GGCC | 7 cut(s) | 152, 320, 426, 432, 632, 707, 959 |
| BspCNI | CTCAG | 1 cut(s) | 108 |
| BspEI | TCCGGA | 1 cut(s) | 682 |
| BspLI | GGNNCC | 8 cut(s) | 108, 341, 427, 687, 770, 960, 998, 1075 |
| BspMAI | CTGCAG | 3 cut(s) | 82, 291, 618 |
| BspMI | ACCTGC | 1 cut(s) | 472 |
| BspPI | GGATC | 1 cut(s) | 165 |
| BspT107I | GGYRCC | 1 cut(s) | 339 |
| BspTI | CTTAAG | 1 cut(s) | 811 |
| BspTNI | GGTCTC | 1 cut(s) | 98 |
| BsrBI | CCGCTC | 1 cut(s) | 197 |
| BsrDI | GCAATG | 1 cut(s) | 1048 |
| BsrI | ACTGG | 4 cut(s) | 333, 539, 962, 1012 |
| BssECI | CCNNGG | 7 cut(s) | 45, 153, 369, 427, 729, 897, 954 |
| BssMI | GATC | 5 cut(s) | 157, 201, 232, 471, 713 |
| BssT1I | CCWWGG | 1 cut(s) | 729 |
| Bst2UI | CCWGG | 5 cut(s) | 46, 226, 371, 899, 1057 |
| Bst4CI | ACNGT | 3 cut(s) | 528, 680, 1067 |
| BstAFI | CTTAAG | 1 cut(s) | 811 |
| BstC8I | GCNNGC | 6 cut(s) | 150, 195, 318, 609, 618, 795 |
| BstDEI | CTNAG | 4 cut(s) | 95, 245, 759, 941 |
| BstEII | GGTNACC | 1 cut(s) | 461 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 776, 1054 |
| BstF5I | GGATG | 6 cut(s) | 380, 474, 748, 979, 1052, 1081 |
| BstH2I | RGCGCY | 1 cut(s) | 729 |
| BstHHI | GCGC | 1 cut(s) | 728 |
| BstKTI | GATC | 5 cut(s) | 160, 204, 235, 474, 716 |
| BstMAI | GTCTC | 1 cut(s) | 98 |
| BstMBI | GATC | 5 cut(s) | 157, 201, 232, 471, 713 |
| BstMCI | CGRYCG | 1 cut(s) | 716 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 203, 613, 617, 794, 1038 |
| BstNI | CCWGG | 5 cut(s) | 46, 226, 371, 899, 1057 |
| BstPI | GGTNACC | 1 cut(s) | 461 |
| BstSFI | CTRYAG | 4 cut(s) | 78, 287, 614, 701 |
| BstSLI | GKGCMC | 3 cut(s) | 52, 119, 613 |
| BstV1I | GCAGC | 1 cut(s) | 218 |
| BsuRI | GGCC | 7 cut(s) | 152, 320, 426, 432, 632, 707, 959 |
| BtsCI | GGATG | 6 cut(s) | 380, 474, 748, 979, 1052, 1081 |
| BtsIMutI | CAGTG | 3 cut(s) | 50, 326, 969 |
| BveI | ACCTGC | 1 cut(s) | 472 |
| Cac8I | GCNNGC | 6 cut(s) | 150, 195, 318, 609, 618, 795 |
| CaiI | CAGNNNCTG | 1 cut(s) | 295 |
| CfoI | GCGC | 1 cut(s) | 728 |
| Csp6I | GTAC | 1 cut(s) | 69 |
| CviAII | CATG | 1 cut(s) | 89 |
| CviQI | GTAC | 1 cut(s) | 69 |
| DdeI | CTNAG | 4 cut(s) | 95, 245, 759, 941 |
| DpnI | GATC | 5 cut(s) | 159, 203, 234, 473, 715 |
| DpnII | GATC | 5 cut(s) | 157, 201, 232, 471, 713 |
| DraIII | CACNNNGTG | 1 cut(s) | 762 |
| Eco130I | CCWWGG | 1 cut(s) | 729 |
| Eco147I | AGGCCT | 2 cut(s) | 152, 707 |
| Eco24I | GRGCYC | 1 cut(s) | 661 |
| Eco31I | GGTCTC | 1 cut(s) | 98 |
| Eco47I | GGWCC | 8 cut(s) | 106, 676, 685, 769, 997, 1009, 1059, 1074 |
| Eco88I | CYCGRG | 2 cut(s) | 321, 1027 |
| Eco91I | GGTNACC | 1 cut(s) | 461 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 776, 1054 |
| EcoO109I | RGGNCCY | 2 cut(s) | 425, 769 |
| EcoO65I | GGTNACC | 1 cut(s) | 461 |
| EcoRII | CCWGG | 5 cut(s) | 44, 224, 369, 897, 1055 |
| EcoT14I | CCWWGG | 1 cut(s) | 729 |
| EcoT38I | GRGCYC | 1 cut(s) | 661 |
| ErhI | CCWWGG | 1 cut(s) | 729 |
| FaeI | CATG | 1 cut(s) | 92 |
| FaqI | GGGAC | 4 cut(s) | 659, 782, 935, 1087 |
| FatI | CATG | 1 cut(s) | 88 |
| FauI | CCCGC | 1 cut(s) | 153 |
| FbaI | TGATCA | 1 cut(s) | 232 |
| FblI | GTMKAC | 2 cut(s) | 449, 486 |
| Fnu4HI | GCNGC | 2 cut(s) | 207, 750 |
| FokI | GGATG | 6 cut(s) | 367, 481, 755, 986, 1039, 1068 |
| FriOI | GRGCYC | 1 cut(s) | 661 |
| Fsp4HI | GCNGC | 2 cut(s) | 207, 750 |
| FspBI | CTAG | 2 cut(s) | 375, 785 |
| GlaI | GCGC | 1 cut(s) | 727 |
| GluI | GCNGC | 2 cut(s) | 207, 750 |
| GsaI | CCCAGC | 1 cut(s) | 142 |
| HaeII | RGCGCY | 1 cut(s) | 729 |
| HaeIII | GGCC | 7 cut(s) | 152, 320, 426, 432, 632, 707, 959 |
| HhaI | GCGC | 1 cut(s) | 728 |
| Hin1II | CATG | 1 cut(s) | 92 |
| Hin6I | GCGC | 1 cut(s) | 726 |
| HinP1I | GCGC | 1 cut(s) | 726 |
| HindIII | AAGCTT | 1 cut(s) | 502 |
| HinfI | GANTC | 4 cut(s) | 99, 185, 977, 1046 |
| HphI | GGTGA | 5 cut(s) | 127, 352, 455, 1008, 1079 |
| Hpy166II | GTNNAC | 3 cut(s) | 218, 450, 487 |
| Hpy188I | TCNGA | 5 cut(s) | 98, 157, 178, 713, 890 |
| Hpy188III | TCNNGA | 5 cut(s) | 236, 683, 767, 981, 1007 |
| Hpy8I | GTNNAC | 3 cut(s) | 218, 450, 487 |
| Hpy99I | CGWCG | 1 cut(s) | 869 |
| HpyAV | CCTTC | 2 cut(s) | 220, 718 |
| HpyCH4III | ACNGT | 3 cut(s) | 528, 680, 1067 |
| HpyCH4IV | ACGT | 2 cut(s) | 399, 914 |
| HpyCH4V | TGCA | 4 cut(s) | 80, 289, 481, 616 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 203, 613, 617, 794, 1038 |
| HpyF3I | CTNAG | 4 cut(s) | 95, 245, 759, 941 |
| HpySE526I | ACGT | 2 cut(s) | 399, 914 |
| Hsp92II | CATG | 1 cut(s) | 92 |
| HspAI | GCGC | 1 cut(s) | 726 |
| Kpn2I | TCCGGA | 1 cut(s) | 682 |
| Ksp22I | TGATCA | 1 cut(s) | 232 |
| Kzo9I | GATC | 5 cut(s) | 157, 201, 232, 471, 713 |
| LmnI | GCTCC | 3 cut(s) | 172, 790, 1093 |
| Lsp1109I | GCAGC | 1 cut(s) | 218 |
| LweI | GCATC | 2 cut(s) | 389, 520 |
| MaeI | CTAG | 2 cut(s) | 375, 785 |
| MaeII | ACGT | 2 cut(s) | 399, 914 |
| MaeIII | GTNAC | 7 cut(s) | 388, 461, 528, 548, 559, 978, 1014 |
| MalI | GATC | 5 cut(s) | 159, 203, 234, 473, 715 |
| MbiI | CCGCTC | 1 cut(s) | 197 |
| MboI | GATC | 5 cut(s) | 157, 201, 232, 471, 713 |
| MboII | GAAGA | 1 cut(s) | 311 |
| MhlI | GDGCHC | 5 cut(s) | 52, 119, 328, 613, 661 |
| MluCI | AATT | 2 cut(s) | 824, 905 |
| MlyI | GAGTC | 3 cut(s) | 194, 986, 1055 |
| MmeI | TCCRAC | 2 cut(s) | 162, 1086 |
| MroI | TCCGGA | 1 cut(s) | 682 |
| MseI | TTAA | 3 cut(s) | 774, 812, 840 |
| MspCI | CTTAAG | 1 cut(s) | 811 |
| MvaI | CCWGG | 5 cut(s) | 46, 226, 371, 899, 1057 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 203, 613, 617, 794, 1038 |
| NciI | CCSGG | 6 cut(s) | 66, 429, 497, 652, 956, 1091 |
| NdeII | GATC | 5 cut(s) | 157, 201, 232, 471, 713 |
| NlaIII | CATG | 1 cut(s) | 92 |
| NlaIV | GGNNCC | 8 cut(s) | 108, 341, 427, 687, 770, 960, 998, 1075 |
| NmuCI | GTSAC | 4 cut(s) | 461, 548, 978, 1014 |
| PaeR7I | CTCGAG | 1 cut(s) | 1027 |
| PceI | AGGCCT | 2 cut(s) | 152, 707 |
| PfeI | GAWTC | 1 cut(s) | 99 |
| PflFI | GACNNNGTC | 1 cut(s) | 7 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 370 |
| PfoI | TCCNGGA | 1 cut(s) | 495 |
| PkrI | GCNGC | 2 cut(s) | 208, 751 |
| Ple19I | CGATCG | 1 cut(s) | 716 |
| PleI | GAGTC | 3 cut(s) | 193, 985, 1054 |
| PpsI | GAGTC | 3 cut(s) | 193, 985, 1054 |
| PpuMI | RGGWCCY | 1 cut(s) | 769 |
| PshBI | ATTAAT | 1 cut(s) | 840 |
| Psp5II | RGGWCCY | 1 cut(s) | 769 |
| Psp6I | CCWGG | 5 cut(s) | 44, 224, 369, 897, 1055 |
| PspEI | GGTNACC | 1 cut(s) | 461 |
| PspFI | CCCAGC | 1 cut(s) | 138 |
| PspGI | CCWGG | 5 cut(s) | 44, 224, 369, 897, 1055 |
| PspN4I | GGNNCC | 8 cut(s) | 108, 341, 427, 687, 770, 960, 998, 1075 |
| PspPPI | RGGWCCY | 1 cut(s) | 769 |
| PspXI | VCTCGAGB | 1 cut(s) | 1027 |
| PstI | CTGCAG | 3 cut(s) | 82, 291, 618 |
| PstNI | CAGNNNCTG | 1 cut(s) | 295 |
| PsyI | GACNNNGTC | 1 cut(s) | 7 |
| PvuI | CGATCG | 1 cut(s) | 716 |
| RsaI | GTAC | 1 cut(s) | 70 |
| RsaNI | GTAC | 1 cut(s) | 69 |
| SaqAI | TTAA | 3 cut(s) | 774, 812, 840 |
| SatI | GCNGC | 2 cut(s) | 207, 750 |
| Sau3AI | GATC | 5 cut(s) | 157, 201, 232, 471, 713 |
| SbfI | CCTGCAGG | 1 cut(s) | 618 |
| SchI | GAGTC | 3 cut(s) | 194, 986, 1055 |
| SdaI | CCTGCAGG | 1 cut(s) | 618 |
| SduI | GDGCHC | 5 cut(s) | 52, 119, 328, 613, 661 |
| SfaNI | GCATC | 2 cut(s) | 389, 520 |
| SfcI | CTRYAG | 4 cut(s) | 78, 287, 614, 701 |
| Sfr274I | CTCGAG | 1 cut(s) | 1027 |
| SinI | GGWCC | 8 cut(s) | 106, 676, 685, 769, 997, 1009, 1059, 1074 |
| SlaI | CTCGAG | 1 cut(s) | 1027 |
| SmlI | CTYRAG | 3 cut(s) | 505, 811, 1027 |
| SmoI | CTYRAG | 3 cut(s) | 505, 811, 1027 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 618 |
| Sse9I | AATT | 2 cut(s) | 824, 905 |
| SseBI | AGGCCT | 2 cut(s) | 152, 707 |
| SsiI | CCGC | 5 cut(s) | 146, 197, 268, 749, 788 |
| SspMI | CTAG | 2 cut(s) | 375, 785 |
| StuI | AGGCCT | 2 cut(s) | 152, 707 |
| StyI | CCWWGG | 1 cut(s) | 729 |
| TaaI | ACNGT | 3 cut(s) | 528, 680, 1067 |
| TaiI | ACGT | 2 cut(s) | 402, 917 |
| TaqI | TCGA | 3 cut(s) | 11, 474, 1028 |
| TasI | AATT | 2 cut(s) | 824, 905 |
| TauI | GCSGC | 1 cut(s) | 752 |
| TfiI | GAWTC | 1 cut(s) | 99 |
| Tru1I | TTAA | 3 cut(s) | 774, 812, 840 |
| Tru9I | TTAA | 3 cut(s) | 774, 812, 840 |
| TscAI | CASTG | 3 cut(s) | 57, 333, 969 |
| TseFI | GTSAC | 4 cut(s) | 461, 548, 978, 1014 |
| TseI | GCWGC | 1 cut(s) | 206 |
| Tsp45I | GTSAC | 4 cut(s) | 461, 548, 978, 1014 |
| TspDTI | ATGAA | 2 cut(s) | 63, 318 |
| TspGWI | ACGGA | 4 cut(s) | 134, 203, 467, 755 |
| TspRI | CASTG | 3 cut(s) | 57, 333, 969 |
| Tth111I | GACNNNGTC | 1 cut(s) | 7 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 370 |
| Vha464I | CTTAAG | 1 cut(s) | 811 |
| VpaK11BI | GGWCC | 8 cut(s) | 106, 676, 685, 769, 997, 1009, 1059, 1074 |
| VspI | ATTAAT | 1 cut(s) | 840 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 776, 1054 |
| XapI | RAATTY | 1 cut(s) | 824 |
| XhoI | CTCGAG | 1 cut(s) | 1027 |
| XmiI | GTMKAC | 2 cut(s) | 449, 486 |
| XspI | CTAG | 2 cut(s) | 375, 785 |