Rmu_sc0007677.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007677.1
OG0000633
Physical Location & Seq
Forward (+)
1 .. 242
242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007677.1_g000001.1.cds

Sequence Viewer

Length: 242 bp
cgataatcccggatcaggtgactccggtatcggaattggagtctatgcgagctgagatcgcagccttcagggagcagtccagaattgatcaggaacaacggagtaccgatagggaaacaaaccgcctcacgcaacagagaatgcaggatttggaagatgaaaacacggcgctagcccgagcactagacaggaggcaccagcacaacaaggcactcactcaggccctggctagagcatcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.16

Weight (kDa)

5.64

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AciI CCGC 1 cut(s) 123
AclWI GGATC 1 cut(s) 20
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 15
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
Alw21I GWGCWC 1 cut(s) 183
AlwI GGATC 1 cut(s) 20
AlwNI CAGNNNCTG 1 cut(s) 225
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 61
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 222
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 30
AsuNHI GCTAGC 1 cut(s) 171
AvaI CYCGRG 1 cut(s) 176
BaeI ACNNNNGTAYC 2 cut(s) 11, 44
BanI GGYRCC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 73
BceAI ACGGC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 226
BclI TGATCA 1 cut(s) 87
BcnI CCSGG 1 cut(s) 10
BfaI CTAG 4 cut(s) 172, 184, 230, 240
BfoI RGCGCY 1 cut(s) 172
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
Bme1390I CCNGG 2 cut(s) 10, 226
BmeT110I CYCGRG 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 2 cut(s) 10, 226
BmtI GCTAGC 1 cut(s) 175
BpuMI CCSGG 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 224
BsaWI WCCGGW 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 15
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 44, 232
BseXI GCAGC 1 cut(s) 73
BshFI GGCC 1 cut(s) 223
BshNI GGYRCC 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 183
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 2 cut(s) 10, 25
BslI CCNNNNNNNGG 1 cut(s) 15
BsmI GAATGC 1 cut(s) 146
BsnI GGCC 1 cut(s) 223
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 3 cut(s) 12, 56, 87
BspACI CCGC 1 cut(s) 123
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 2 cut(s) 45, 231
BspLI GGNNCC 1 cut(s) 196
BspOI GCTAGC 1 cut(s) 175
BspPI GGATC 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 3 cut(s) 12, 56, 87
Bst2UI CCWGG 1 cut(s) 226
BstC8I GCNNGC 2 cut(s) 50, 173
BstDEI CTNAG 2 cut(s) 53, 218
BstF5I GGATG 1 cut(s) 235
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 3 cut(s) 15, 59, 90
BstMBI GATC 3 cut(s) 12, 56, 87
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 8, 224
BstV1I GCAGC 1 cut(s) 73
BsuRI GGCC 1 cut(s) 223
BtsCI GGATG 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 50, 173
CaiI CAGNNNCTG 1 cut(s) 225
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 104
CviJI RGCY 5 cut(s) 52, 64, 175, 223, 229
CviKI_1 RGCY 5 cut(s) 52, 64, 175, 223, 229
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 2 cut(s) 53, 218
DpnI GATC 3 cut(s) 14, 58, 89
DpnII GATC 3 cut(s) 12, 56, 87
Eco57I CTGAAG 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 224
FaiI YATR 1 cut(s) 46
FbaI TGATCA 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 62
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 62
FspBI CTAG 4 cut(s) 172, 184, 230, 240
GlaI GCGC 1 cut(s) 170
GluI GCNGC 1 cut(s) 62
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 1 cut(s) 223
HapII CCGG 2 cut(s) 10, 25
HhaI GCGC 1 cut(s) 171
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HinfI GANTC 2 cut(s) 21, 40
HpaII CCGG 2 cut(s) 10, 25
HphI GGTGA 1 cut(s) 30
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 2 cut(s) 80, 91
HpyAV CCTTC 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 2 cut(s) 53, 218
HspAI GCGC 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 87
Kzo9I GATC 3 cut(s) 12, 56, 87
LmnI GCTCC 1 cut(s) 72
Lsp1109I GCAGC 1 cut(s) 73
MaeI CTAG 4 cut(s) 172, 184, 230, 240
MaeIII GTNAC 1 cut(s) 18
MalI GATC 3 cut(s) 14, 58, 89
MboI GATC 3 cut(s) 12, 56, 87
MboII GAAGA 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 2 cut(s) 34, 83
MlyI GAGTC 2 cut(s) 15, 49
MnlI CCTC 2 cut(s) 136, 185
MspI CCGG 2 cut(s) 10, 25
MspR9I CCNGG 2 cut(s) 10, 226
Mva1269I GAATGC 1 cut(s) 146
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 58
NciI CCSGG 1 cut(s) 10
NdeII GATC 3 cut(s) 12, 56, 87
NheI GCTAGC 1 cut(s) 171
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 18
PctI GAATGC 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 8
PkrI GCNGC 1 cut(s) 63
PleI GAGTC 2 cut(s) 15, 48
PpsI GAGTC 2 cut(s) 15, 48
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 222
PstNI CAGNNNCTG 1 cut(s) 225
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 3 cut(s) 12, 56, 87
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 2 cut(s) 15, 49
ScrFI CCNGG 2 cut(s) 10, 226
SduI GDGCHC 1 cut(s) 183
SetI ASST 2 cut(s) 20, 54
Sse9I AATT 2 cut(s) 34, 83
SsiI CCGC 1 cut(s) 123
SspMI CTAG 4 cut(s) 172, 184, 230, 240
StyD4I CCNGG 2 cut(s) 8, 224
TasI AATT 2 cut(s) 34, 83
TseFI GTSAC 1 cut(s) 18
TseI GCWGC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 18
TspDTI ATGAA 1 cut(s) 173
TspGWI ACGGA 1 cut(s) 114
XspI CTAG 4 cut(s) 172, 184, 230, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.