Rmu_co8382323.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8382323.1
OG0000633
Physical Location & Seq
Forward (+)
1 .. 921
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8382323.1_g000001.1.cds

Sequence Viewer

Length: 494 bp
atcccgcagggctttccagagggtgtcaagggccgggttcgataacctccgggtcagtgctcacaaacggcgacacctatggtgacaaaggcatcgggtctgcctactggagctcactgaagaaaacaccagaaactagaaccagagggatgaattgcatcccacatcgaagaaatgggaaacaactttcccatgtccaagtatttaagacaatcccaaccaccttcaaaagggaggcagtgagcaccaggattgaaacacacggcctgagatctttggacccactaagagaaaaccacccaccagtcgtcccggaccctctggcccctacttcagacctggaagccatccaagcggagatcgtagcctttcgtgagcaaagcaagattgacagggaacaacaaaggatcgacagagagaccaacctcctatcgcaacagacactacaagagttagaagaagagaacaccgcgctagcttgggtgttagactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.09

Weight (kDa)

6.53

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 472
AciI CCGC 3 cut(s) 5, 355, 470
AclWI GGATC 1 cut(s) 415
AcuI CTGAAG 2 cut(s) 139, 317
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 2 cut(s) 228, 256
AjnI CCWGG 2 cut(s) 247, 338
AluBI AGCT 2 cut(s) 113, 478
AluI AGCT 2 cut(s) 113, 478
Alw21I GWGCWC 3 cut(s) 62, 115, 247
Alw26I GTCTC 1 cut(s) 412
AlwI GGATC 1 cut(s) 415
AoxI GGCC 3 cut(s) 31, 264, 323
AspLEI GCGC 1 cut(s) 474
AspS9I GGNCC 4 cut(s) 31, 279, 315, 324
AsuC2I CCSGG 3 cut(s) 35, 51, 313
AsuHPI GGTGA 1 cut(s) 94
AsuNHI GCTAGC 1 cut(s) 474
AvaII GGWCC 2 cut(s) 279, 315
BanII GRGCYC 1 cut(s) 115
Bbv12I GWGCWC 3 cut(s) 62, 115, 247
BccI CCATC 1 cut(s) 355
BceAI ACGGC 2 cut(s) 84, 279
BciT130I CCWGG 2 cut(s) 249, 340
BcnI CCSGG 3 cut(s) 35, 51, 313
BcoDI GTCTC 1 cut(s) 412
BfaI CTAG 2 cut(s) 137, 475
BglII AGATCT 1 cut(s) 271
Bme1390I CCNGG 5 cut(s) 35, 51, 249, 313, 340
Bme18I GGWCC 2 cut(s) 279, 315
BmgT120I GGNCC 4 cut(s) 31, 279, 315, 324
BmiI GGNNCC 3 cut(s) 281, 317, 326
BmrFI CCNGG 5 cut(s) 35, 51, 249, 313, 340
BmsI GCATC 2 cut(s) 101, 167
BmtI GCTAGC 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 129
BpuMI CCSGG 3 cut(s) 35, 51, 313
BsaI GGTCTC 1 cut(s) 412
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse1I ACTGG 2 cut(s) 112, 304
BseBI CCWGG 2 cut(s) 249, 340
BseGI GGATG 3 cut(s) 155, 158, 347
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMII CTCAG 1 cut(s) 259
BseNI ACTGG 2 cut(s) 112, 304
Bsh1236I CGCG 1 cut(s) 472
BshFI GGCC 3 cut(s) 33, 266, 325
BsiHKAI GWGCWC 3 cut(s) 62, 115, 247
BsiSI CCGG 3 cut(s) 34, 50, 313
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 1 cut(s) 412
BsmFI GGGAC 1 cut(s) 295
BsnI GGCC 3 cut(s) 33, 266, 325
Bso31I GGTCTC 1 cut(s) 412
Bsp1286I GDGCHC 3 cut(s) 62, 115, 247
Bsp143I GATC 3 cut(s) 271, 359, 407
BspACI CCGC 3 cut(s) 5, 355, 470
BspANI GGCC 3 cut(s) 33, 266, 325
BspCNI CTCAG 1 cut(s) 260
BspFNI CGCG 1 cut(s) 472
BspLI GGNNCC 3 cut(s) 281, 317, 326
BspOI GCTAGC 1 cut(s) 478
BspPI GGATC 1 cut(s) 415
BspTNI GGTCTC 1 cut(s) 412
BsrI ACTGG 2 cut(s) 112, 304
BssMI GATC 3 cut(s) 271, 359, 407
Bst2UI CCWGG 2 cut(s) 249, 340
Bst6I CTCTTC 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 476
BstDEI CTNAG 2 cut(s) 268, 286
BstENI CCTNNNNNAGG 1 cut(s) 228
BstF5I GGATG 3 cut(s) 155, 158, 347
BstFNI CGCG 1 cut(s) 472
BstHHI GCGC 1 cut(s) 474
BstKTI GATC 3 cut(s) 274, 362, 410
BstMAI GTCTC 1 cut(s) 412
BstMBI GATC 3 cut(s) 271, 359, 407
BstMWI GCNNNNNNNGC 1 cut(s) 352
BstNI CCWGG 2 cut(s) 249, 340
BstSCI CCNGG 5 cut(s) 33, 49, 247, 311, 338
BstUI CGCG 1 cut(s) 472
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 3 cut(s) 33, 266, 325
BtsCI GGATG 3 cut(s) 155, 158, 347
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 3 cut(s) 62, 115, 245
Cac8I GCNNGC 1 cut(s) 476
CfoI GCGC 1 cut(s) 474
Cfr13I GGNCC 4 cut(s) 31, 279, 315, 324
CviAII CATG 1 cut(s) 193
CviJI RGCY 8 cut(s) 12, 33, 113, 266, 325, 346, 367, 478
CviKI_1 RGCY 8 cut(s) 12, 33, 113, 266, 325, 346, 367, 478
DdeI CTNAG 2 cut(s) 268, 286
DpnI GATC 3 cut(s) 273, 361, 409
DpnII GATC 3 cut(s) 271, 359, 407
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
Ecl136II GAGCTC 1 cut(s) 113
Eco24I GRGCYC 1 cut(s) 115
Eco31I GGTCTC 1 cut(s) 412
Eco47I GGWCC 2 cut(s) 279, 315
Eco53kI GAGCTC 1 cut(s) 113
Eco57I CTGAAG 2 cut(s) 139, 317
EcoICRI GAGCTC 1 cut(s) 113
EcoNI CCTNNNNNAGG 1 cut(s) 228
EcoRII CCWGG 2 cut(s) 247, 338
EcoT38I GRGCYC 1 cut(s) 115
FaeI CATG 1 cut(s) 196
FaiI YATR 2 cut(s) 80, 194
FaqI GGGAC 1 cut(s) 295
FatI CATG 1 cut(s) 192
FauI CCCGC 1 cut(s) 12
FokI GGATG 3 cut(s) 145, 162, 334
FriOI GRGCYC 1 cut(s) 115
FspBI CTAG 2 cut(s) 137, 475
GlaI GCGC 1 cut(s) 473
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 3 cut(s) 33, 266, 325
HapII CCGG 3 cut(s) 34, 50, 313
HhaI GCGC 1 cut(s) 474
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 1 cut(s) 472
HinP1I GCGC 1 cut(s) 472
HpaII CCGG 3 cut(s) 34, 50, 313
HphI GGTGA 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 336
Hpy188III TCNNGA 2 cut(s) 17, 373
HpyAV CCTTC 1 cut(s) 234
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 352
HpyF3I CTNAG 2 cut(s) 268, 286
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 1 cut(s) 472
Kzo9I GATC 3 cut(s) 271, 359, 407
LmnI GCTCC 1 cut(s) 110
LweI GCATC 2 cut(s) 101, 167
MaeI CTAG 2 cut(s) 137, 475
MaeIII GTNAC 1 cut(s) 82
MalI GATC 3 cut(s) 273, 361, 409
MboI GATC 3 cut(s) 271, 359, 407
MboII GAAGA 4 cut(s) 132, 182, 469, 472
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 3 cut(s) 62, 115, 247
MluCI AATT 1 cut(s) 153
MnlI CCTC 6 cut(s) 13, 57, 139, 228, 329, 436
MseI TTAA 1 cut(s) 206
MspI CCGG 3 cut(s) 34, 50, 313
MspR9I CCNGG 5 cut(s) 35, 51, 249, 313, 340
MvaI CCWGG 2 cut(s) 249, 340
MvnI CGCG 1 cut(s) 472
MwoI GCNNNNNNNGC 1 cut(s) 352
NciI CCSGG 3 cut(s) 35, 51, 313
NdeII GATC 3 cut(s) 271, 359, 407
NheI GCTAGC 1 cut(s) 474
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 3 cut(s) 281, 317, 326
NmuCI GTSAC 1 cut(s) 82
PfoI TCCNGGA 1 cut(s) 311
Psp124BI GAGCTC 1 cut(s) 115
Psp6I CCWGG 2 cut(s) 247, 338
PspGI CCWGG 2 cut(s) 247, 338
PspN4I GGNNCC 3 cut(s) 281, 317, 326
PspPI GGNCC 4 cut(s) 31, 279, 315, 324
PsuI RGATCY 1 cut(s) 271
SacI GAGCTC 1 cut(s) 115
SaqAI TTAA 1 cut(s) 206
Sau3AI GATC 3 cut(s) 271, 359, 407
Sau96I GGNCC 4 cut(s) 31, 279, 315, 324
ScrFI CCNGG 5 cut(s) 35, 51, 249, 313, 340
SduI GDGCHC 3 cut(s) 62, 115, 247
SetI ASST 7 cut(s) 49, 79, 115, 226, 341, 428, 480
SfaNI GCATC 2 cut(s) 101, 167
SinI GGWCC 2 cut(s) 279, 315
Sse9I AATT 1 cut(s) 153
SsiI CCGC 3 cut(s) 5, 355, 470
SspMI CTAG 2 cut(s) 137, 475
SstI GAGCTC 1 cut(s) 115
StyD4I CCNGG 5 cut(s) 33, 49, 247, 311, 338
TaqI TCGA 3 cut(s) 40, 168, 410
TasI AATT 1 cut(s) 153
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 3 cut(s) 62, 122, 245
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 166
TspRI CASTG 3 cut(s) 62, 122, 245
VpaK11BI GGWCC 2 cut(s) 279, 315
XagI CCTNNNNNAGG 1 cut(s) 228
XspI CTAG 2 cut(s) 137, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.