Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000633

Physical Location & Seq

Genomic Coordinates Forward (+)

5034321 .. 5035232

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00337050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGATACATATCCCGAAGGGCCTCGCTAAAGATTCAACAGGGGGAAAATGAAACCTTGAAGACCTTCGTTAACCGATGGCAAGCGCCTACCGCTAAGTGCCGGGACCTTAACAAAGAACCGGCTAAGCTAGCTTTCGGGAGGGGCTTAAGGTGCGGAGAGTTTCTCTACGAGATTAACCATCACCCCGCAGCTAGCTACAACGAGCCGATGGCCACGGCCATCGTGCACGCTCAAGCCGAATTCAAAAATTATGGGGATAACGTCATACTAGAGCTAAGGGTCTTCACCCGCCCCCAATGGTCGTGGATGAGCCACGAAAGAGGGAGTGGGTCCATAATCGGGATTGATCACCCCATACCTCAAGCAAGAGAAGCAAAGAGTCCTCATCCAGAAAGGGCACAAGAGCCCCTCGAACACTACCACCACCCCGGTATGAGGTGTTTACTATCCTCAACGCTTCGTATGAAACTATATGGAACGAGAACAAGGATGAGATACTTGGACCACCACCGAGGAAGTTCCCGAAGAGTAAACTTACCCGGCAGGATACCGGAAGGTTCTATACATACCATGAAGATGCCGGCACAATACCAACCTCTCGCATGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

204

Amino Acids

23.52

Weight (kDa)

9.87

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000633)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22376 FvH4_4g15485
rosa_laevigata	RLG00000001772
rosa_multiflora	Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii	Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa	Rorug02G0247700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	93, 156, 189, 292
AcoI	YGGCCR	2 cut(s)	213, 219
AcsI	RAATTY	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	342, 438
AflII	CTTAAG	1 cut(s)	148
AgsI	TTSAA	3 cut(s)	38, 61, 247
AluBI	AGCT	5 cut(s)	130, 134, 194, 198, 277
AluI	AGCT	5 cut(s)	130, 134, 194, 198, 277
Alw21I	GWGCWC	1 cut(s)	231
Alw44I	GTGCAC	1 cut(s)	227
AoxI	GGCC	3 cut(s)	21, 213, 219
ApaLI	GTGCAC	1 cut(s)	227
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	242
Asp700I	GAANNNNTTC	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	4 cut(s)	21, 106, 333, 505
AsuC2I	CCSGG	3 cut(s)	104, 432, 543
AsuHPI	GGTGA	3 cut(s)	176, 280, 344
AsuNHI	GCTAGC	2 cut(s)	130, 194
AvaII	GGWCC	3 cut(s)	106, 333, 505
BaeGI	GKGCMC	2 cut(s)	231, 403
BalI	TGGCCA	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	411
BarI	GAAGNNNNNNTAC	2 cut(s)	549, 581
BbsI	GAAGAC	2 cut(s)	68, 277
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	203
BccI	CCATC	4 cut(s)	72, 189, 205, 230
BceAI	ACGGC	1 cut(s)	234
BciVI	GTATCC	1 cut(s)	543
BclI	TGATCA	1 cut(s)	349
BcnI	CCSGG	3 cut(s)	104, 432, 543
BfaI	CTAG	3 cut(s)	131, 195, 272
BfoI	RGCGCY	1 cut(s)	89
BfrI	CTTAAG	1 cut(s)	148
BfuI	GTATCC	1 cut(s)	543
BisI	GCNGC	1 cut(s)	192
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	3 cut(s)	104, 432, 543
Bme18I	GGWCC	3 cut(s)	106, 333, 505
BmgT120I	GGNCC	4 cut(s)	21, 106, 333, 505
BmiI	GGNNCC	2 cut(s)	107, 334
BmrFI	CCNGG	3 cut(s)	104, 432, 543
BmsI	GCATC	1 cut(s)	570
BmtI	GCTAGC	2 cut(s)	134, 198
BpiI	GAAGAC	2 cut(s)	68, 277
BplI	GAGNNNNNCTC	2 cut(s)	150, 182
Bpu10I	CCTNAGC	1 cut(s)	278
Bpu1102I	GCTNAGC	1 cut(s)	126
BpuEI	CTTGAG	2 cut(s)	219, 348
BpuMI	CCSGG	3 cut(s)	104, 432, 543
BsaBI	GATNNNNATC	1 cut(s)	10
BsaJI	CCNNGG	3 cut(s)	216, 430, 514
BsaWI	WCCGGW	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	2 cut(s)	342, 438
Bse118I	RCCGGY	2 cut(s)	121, 583
Bse8I	GATNNNNATC	1 cut(s)	10
BseDI	CCNNGG	3 cut(s)	216, 430, 514
BseGI	GGATG	3 cut(s)	315, 388, 498
BseJI	GATNNNNATC	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	342, 438
BseSI	GKGCMC	2 cut(s)	231, 403
BseXI	GCAGC	1 cut(s)	203
BshFI	GGCC	3 cut(s)	23, 215, 221
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	6 cut(s)	103, 122, 432, 543, 554, 584
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	2 cut(s)	342, 438
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	3 cut(s)	23, 215, 221
Bsp1286I	GDGCHC	3 cut(s)	231, 403, 411
Bsp143I	GATC	1 cut(s)	349
Bsp1720I	GCTNAGC	1 cut(s)	126
BspACI	CCGC	4 cut(s)	93, 156, 189, 292
BspANI	GGCC	3 cut(s)	23, 215, 221
BspLI	GGNNCC	2 cut(s)	107, 334
BspOI	GCTAGC	2 cut(s)	134, 198
BspTI	CTTAAG	1 cut(s)	148
BsrFI	RCCGGY	2 cut(s)	121, 583
BssAI	RCCGGY	2 cut(s)	121, 583
BssECI	CCNNGG	3 cut(s)	216, 430, 514
BssMI	GATC	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	523
BstAFI	CTTAAG	1 cut(s)	148
BstC8I	GCNNGC	5 cut(s)	84, 132, 196, 231, 585
BstDEI	CTNAG	3 cut(s)	96, 126, 278
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	3 cut(s)	315, 388, 498
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 131, 153, 374
BstSCI	CCNGG	3 cut(s)	102, 430, 541
BstSLI	GKGCMC	2 cut(s)	231, 403
BstV1I	GCAGC	1 cut(s)	203
BstV2I	GAAGAC	2 cut(s)	68, 277
BsuI	GTATCC	1 cut(s)	543
BsuRI	GGCC	3 cut(s)	23, 215, 221
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	3 cut(s)	315, 388, 498
Cac8I	GCNNGC	5 cut(s)	84, 132, 196, 231, 585
CfoI	GCGC	1 cut(s)	88
Cfr10I	RCCGGY	2 cut(s)	121, 583
Cfr13I	GGNCC	4 cut(s)	21, 106, 333, 505
CspCI	CAANNNNNGTGG	2 cut(s)	287, 322
CviAII	CATG	2 cut(s)	574, 606
DdeI	CTNAG	3 cut(s)	96, 126, 278
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
EaeI	YGGCCR	2 cut(s)	213, 219
Eam1104I	CTCTTC	1 cut(s)	523
EarI	CTCTTC	1 cut(s)	523
Eco24I	GRGCYC	1 cut(s)	411
Eco47I	GGWCC	3 cut(s)	106, 333, 505
EcoO109I	RGGNCCY	2 cut(s)	21, 106
EcoRI	GAATTC	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	411
FaeI	CATG	2 cut(s)	577, 609
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	2 cut(s)	573, 605
FauI	CCCGC	2 cut(s)	196, 299
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	3 cut(s)	322, 375, 505
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	3 cut(s)	131, 195, 272
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	89
HaeIII	GGCC	3 cut(s)	23, 215, 221
HapII	CCGG	6 cut(s)	103, 122, 432, 543, 554, 584
HhaI	GCGC	1 cut(s)	88
Hin1II	CATG	2 cut(s)	577, 609
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	2 cut(s)	34, 382
HpaI	GTTAAC	1 cut(s)	73
HpaII	CCGG	6 cut(s)	103, 122, 432, 543, 554, 584
HphI	GGTGA	3 cut(s)	176, 280, 344
Hpy166II	GTNNAC	4 cut(s)	73, 229, 446, 535
Hpy188III	TCNNGA	5 cut(s)	15, 139, 343, 392, 525
Hpy8I	GTNNAC	4 cut(s)	73, 229, 446, 535
HpyAV	CCTTC	3 cut(s)	12, 76, 551
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 131, 153, 374
HpyF3I	CTNAG	3 cut(s)	96, 126, 278
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	577, 609
HspAI	GCGC	1 cut(s)	86
KroI	GCCGGC	1 cut(s)	583
KroNI	GCCGGC	1 cut(s)	585
Ksp22I	TGATCA	1 cut(s)	349
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	349
LpnPI	CCDG	9 cut(s)	26, 116, 135, 405, 445, 532, 556, 567, 597
Lsp1109I	GCAGC	1 cut(s)	203
LweI	GCATC	1 cut(s)	570
MaeI	CTAG	3 cut(s)	131, 195, 272
MaeII	ACGT	1 cut(s)	264
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	4 cut(s)	73, 277, 540, 589
MhlI	GDGCHC	3 cut(s)	231, 403, 411
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	2 cut(s)	242, 250
MluNI	TGGCCA	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	391
Mox20I	TGGCCA	1 cut(s)	215
MroNI	GCCGGC	1 cut(s)	583
MroXI	GAANNNNTTC	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	5 cut(s)	72, 111, 149, 177, 613
MslI	CAYNNNNRTG	1 cut(s)	578
Msp20I	TGGCCA	1 cut(s)	215
MspCI	CTTAAG	1 cut(s)	148
MspI	CCGG	6 cut(s)	103, 122, 432, 543, 554, 584
MspR9I	CCNGG	3 cut(s)	104, 432, 543
MwoI	GCNNNNNNNGC	4 cut(s)	92, 131, 153, 374
NaeI	GCCGGC	1 cut(s)	585
NciI	CCSGG	3 cut(s)	104, 432, 543
NdeII	GATC	1 cut(s)	349
NgoMIV	GCCGGC	1 cut(s)	583
NheI	GCTAGC	2 cut(s)	130, 194
NlaIII	CATG	2 cut(s)	577, 609
NlaIV	GGNNCC	2 cut(s)	107, 334
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PdiI	GCCGGC	1 cut(s)	585
PdmI	GAANNNNTTC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
PpuMI	RGGWCCY	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	107, 334
PspPI	GGNCC	4 cut(s)	21, 106, 333, 505
PspPPI	RGGWCCY	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	578
SaqAI	TTAA	5 cut(s)	72, 111, 149, 177, 613
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	4 cut(s)	21, 106, 333, 505
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	3 cut(s)	104, 432, 543
SduI	GDGCHC	3 cut(s)	231, 403, 411
SfaNI	GCATC	1 cut(s)	570
SinI	GGWCC	3 cut(s)	106, 333, 505
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	3 cut(s)	148, 234, 363
SmoI	CTYRAG	3 cut(s)	148, 234, 363
Sse9I	AATT	2 cut(s)	242, 250
SsiI	CCGC	4 cut(s)	93, 156, 189, 292
SspMI	CTAG	3 cut(s)	131, 195, 272
StyD4I	CCNGG	3 cut(s)	102, 430, 541
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	414
TasI	AATT	2 cut(s)	242, 250
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	5 cut(s)	72, 111, 149, 177, 613
Tru9I	TTAA	5 cut(s)	72, 111, 149, 177, 613
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	3 cut(s)	66, 482, 590
Vha464I	CTTAAG	1 cut(s)	148
VneI	GTGCAC	1 cut(s)	227
VpaK11BI	GGWCC	3 cut(s)	106, 333, 505
XapI	RAATTY	1 cut(s)	242
XmnI	GAANNNNTTC	1 cut(s)	65
XspI	CTAG	3 cut(s)	131, 195, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.