Rmu_co7991850.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7991850.1
OG0000633
Physical Location & Seq
Reverse (-)
2 .. 438
437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7991850.1_g000001.1.cds

Sequence Viewer

Length: 437 bp
atgagtgagccagaagtgtcaggagaggggagaagtgttgcccgggcattggtattctctccgggaacttcgtcagcagaggcgccagctgctcagggggaaatccatggtgtcggatccttgagcccggtggtcccggatcaggtggctccggtatcggagctggagtctatgcgagctgagatcgcagcctttagggagcaatccaggatcgatcgggaacaacggagtaccgatagggaaacgaaccgcctcacgcaacagagaatgcaggatttggaagatgaaaacacggcgctagctagagcactagacaggaggcaccagcacaacgaagcacttactcaagccctggctagagcatcccagctagcagacctgaacgccatcccgataacaggaaacaccaacaccgcaccggcacctcctacggagga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.62

Weight (kDa)

4.9

Isoelectric Point (pI)

56.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 82, 321, 421
AciI CCGC 2 cut(s) 250, 414
AclWI GGATC 4 cut(s) 111, 124, 147, 218
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 3 cut(s) 49, 142, 398
AjnI CCWGG 2 cut(s) 206, 351
AluBI AGCT 5 cut(s) 89, 163, 179, 302, 370
AluI AGCT 5 cut(s) 89, 163, 179, 302, 370
Alw21I GWGCWC 1 cut(s) 310
AlwI GGATC 4 cut(s) 111, 124, 147, 218
Ama87I CYCGRG 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 89, 188
AspLEI GCGC 2 cut(s) 85, 298
AspS9I GGNCC 1 cut(s) 133
AsuC2I CCSGG 5 cut(s) 43, 44, 63, 128, 137
AsuNHI GCTAGC 2 cut(s) 298, 370
AvaI CYCGRG 1 cut(s) 42
AvaII GGWCC 1 cut(s) 133
BamHI GGATCC 1 cut(s) 116
BanI GGYRCC 3 cut(s) 82, 321, 421
BanII GRGCYC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 2 cut(s) 76, 200
BccI CCATC 1 cut(s) 395
BceAI ACGGC 1 cut(s) 309
BciT130I CCWGG 2 cut(s) 208, 353
BcnI CCSGG 5 cut(s) 43, 44, 63, 128, 137
BfaI CTAG 5 cut(s) 299, 303, 311, 357, 371
BfoI RGCGCY 2 cut(s) 86, 299
BisI GCNGC 2 cut(s) 90, 189
BlsI GCNGC 2 cut(s) 91, 190
Bme1390I CCNGG 7 cut(s) 43, 44, 63, 128, 137, 208, 353
Bme18I GGWCC 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 6 cut(s) 84, 118, 135, 150, 323, 423
BmrFI CCNGG 7 cut(s) 43, 44, 63, 128, 137, 208, 353
BmsI GCATC 1 cut(s) 371
BmtI GCTAGC 2 cut(s) 302, 374
BpmI CTGGAG 1 cut(s) 185
Bpu10I CCTNAGC 1 cut(s) 93
BpuEI CTTGAG 2 cut(s) 142, 330
BpuMI CCSGG 5 cut(s) 43, 44, 63, 128, 137
Bsa29I ATCGAT 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 83
BsaJI CCNNGG 3 cut(s) 42, 106, 351
BsaWI WCCGGW 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 142, 398
Bse118I RCCGGY 1 cut(s) 418
BseBI CCWGG 2 cut(s) 208, 353
BseCI ATCGAT 1 cut(s) 213
BseDI CCNNGG 3 cut(s) 42, 106, 351
BseGI GGATG 2 cut(s) 362, 387
BseLI CCNNNNNNNGG 3 cut(s) 49, 142, 398
BseMII CTCAG 2 cut(s) 107, 171
BseXI GCAGC 2 cut(s) 76, 200
BseYI CCCAGC 1 cut(s) 366
Bsh1285I CGRYCG 1 cut(s) 217
BshNI GGYRCC 3 cut(s) 82, 321, 421
BshVI ATCGAT 1 cut(s) 213
BsiEI CGRYCG 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 42
BsiSI CCGG 6 cut(s) 43, 62, 128, 137, 152, 419
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 3 cut(s) 49, 142, 398
BsmFI GGGAC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 273
BsoBI CYCGRG 1 cut(s) 42
Bsp1286I GDGCHC 2 cut(s) 128, 310
Bsp143I GATC 5 cut(s) 116, 139, 183, 210, 214
Bsp19I CCATGG 1 cut(s) 106
BspACI CCGC 2 cut(s) 250, 414
BspCNI CTCAG 2 cut(s) 106, 172
BspDI ATCGAT 1 cut(s) 213
BspLI GGNNCC 6 cut(s) 84, 118, 135, 150, 323, 423
BspOI GCTAGC 2 cut(s) 302, 374
BspPI GGATC 4 cut(s) 111, 124, 147, 218
BspT107I GGYRCC 3 cut(s) 82, 321, 421
BsrFI RCCGGY 1 cut(s) 418
BssAI RCCGGY 1 cut(s) 418
BssECI CCNNGG 3 cut(s) 42, 106, 351
BssMI GATC 5 cut(s) 116, 139, 183, 210, 214
BssNI GRCGYC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 106
Bst2UI CCWGG 2 cut(s) 208, 353
BstACI GRCGYC 1 cut(s) 83
BstC8I GCNNGC 4 cut(s) 87, 177, 300, 372
BstDEI CTNAG 2 cut(s) 93, 180
BstDSI CCRYGG 1 cut(s) 106
BstF5I GGATG 2 cut(s) 362, 387
BstH2I RGCGCY 2 cut(s) 86, 299
BstHHI GCGC 2 cut(s) 85, 298
BstKTI GATC 5 cut(s) 119, 142, 186, 213, 217
BstMBI GATC 5 cut(s) 116, 139, 183, 210, 214
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 2 cut(s) 89, 185
BstNI CCWGG 2 cut(s) 208, 353
BstSCI CCNGG 7 cut(s) 41, 42, 61, 126, 135, 206, 351
BstV1I GCAGC 2 cut(s) 76, 200
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
Bsu15I ATCGAT 1 cut(s) 213
BsuTUI ATCGAT 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 106
BtsCI GGATG 2 cut(s) 362, 387
Cac8I GCNNGC 4 cut(s) 87, 177, 300, 372
CfoI GCGC 2 cut(s) 85, 298
Cfr10I RCCGGY 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 133
Cfr9I CCCGGG 1 cut(s) 42
ClaI ATCGAT 1 cut(s) 213
Csp6I GTAC 1 cut(s) 231
CviAII CATG 1 cut(s) 107
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 2 cut(s) 93, 180
DinI GGCGCC 1 cut(s) 84
DpnI GATC 5 cut(s) 118, 141, 185, 212, 216
DpnII GATC 5 cut(s) 116, 139, 183, 210, 214
Eco130I CCWWGG 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 42
EcoRII CCWGG 2 cut(s) 206, 351
EcoT14I CCWWGG 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 128
EgeI GGCGCC 1 cut(s) 84
EheI GGCGCC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 1 cut(s) 110
FaiI YATR 2 cut(s) 108, 173
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 90, 189
FokI GGATG 2 cut(s) 349, 374
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 90, 189
FspBI CTAG 5 cut(s) 299, 303, 311, 357, 371
GlaI GCGC 2 cut(s) 84, 297
GluI GCNGC 2 cut(s) 90, 189
GsaI CCCAGC 1 cut(s) 370
GsuI CTGGAG 1 cut(s) 185
HaeII RGCGCY 2 cut(s) 86, 299
HapII CCGG 6 cut(s) 43, 62, 128, 137, 152, 419
HhaI GCGC 2 cut(s) 85, 298
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 1 cut(s) 110
Hin6I GCGC 2 cut(s) 83, 296
HinP1I GCGC 2 cut(s) 83, 296
HinfI GANTC 1 cut(s) 167
HpaII CCGG 6 cut(s) 43, 62, 128, 137, 152, 419
Hpy188I TCNGA 2 cut(s) 116, 160
Hpy188III TCNNGA 3 cut(s) 21, 218, 391
HpyCH4V TGCA 1 cut(s) 271
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 185
HpyF3I CTNAG 2 cut(s) 93, 180
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 1 cut(s) 110
HspAI GCGC 2 cut(s) 83, 296
KasI GGCGCC 1 cut(s) 82
Kzo9I GATC 5 cut(s) 116, 139, 183, 210, 214
LmnI GCTCC 3 cut(s) 154, 160, 199
Lsp1109I GCAGC 2 cut(s) 76, 200
LweI GCATC 1 cut(s) 371
MaeI CTAG 5 cut(s) 299, 303, 311, 357, 371
MalI GATC 5 cut(s) 118, 141, 185, 212, 216
MboI GATC 5 cut(s) 116, 139, 183, 210, 214
MboII GAAGA 1 cut(s) 293
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 2 cut(s) 128, 310
Mly113I GGCGCC 1 cut(s) 83
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 6 cut(s) 19, 73, 263, 312, 427, 435
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 6 cut(s) 43, 62, 128, 137, 152, 419
MspR9I CCNGG 7 cut(s) 43, 44, 63, 128, 137, 208, 353
Mva1269I GAATGC 1 cut(s) 273
MvaI CCWGG 2 cut(s) 208, 353
MwoI GCNNNNNNNGC 2 cut(s) 89, 185
NarI GGCGCC 1 cut(s) 83
NciI CCSGG 5 cut(s) 43, 44, 63, 128, 137
NcoI CCATGG 1 cut(s) 106
NdeII GATC 5 cut(s) 116, 139, 183, 210, 214
NheI GCTAGC 2 cut(s) 298, 370
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 6 cut(s) 84, 118, 135, 150, 323, 423
PctI GAATGC 1 cut(s) 273
PfoI TCCNGGA 3 cut(s) 61, 135, 206
PkrI GCNGC 2 cut(s) 91, 190
Ple19I CGATCG 1 cut(s) 217
PleI GAGTC 1 cut(s) 175
PluTI GGCGCC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 175
Psp6I CCWGG 2 cut(s) 206, 351
PspFI CCCAGC 1 cut(s) 366
PspGI CCWGG 2 cut(s) 206, 351
PspN4I GGNNCC 6 cut(s) 84, 118, 135, 150, 323, 423
PspPI GGNCC 1 cut(s) 133
PsuI RGATCY 1 cut(s) 116
PvuI CGATCG 1 cut(s) 217
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SatI GCNGC 2 cut(s) 90, 189
Sau3AI GATC 5 cut(s) 116, 139, 183, 210, 214
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 7 cut(s) 43, 44, 63, 128, 137, 208, 353
SduI GDGCHC 2 cut(s) 128, 310
SetI ASST 8 cut(s) 91, 147, 165, 181, 304, 372, 381, 427
SfaNI GCATC 1 cut(s) 371
SfoI GGCGCC 1 cut(s) 84
SinI GGWCC 1 cut(s) 133
SmaI CCCGGG 1 cut(s) 44
SmlI CTYRAG 2 cut(s) 121, 345
SmoI CTYRAG 2 cut(s) 121, 345
SrfI GCCCGGGC 1 cut(s) 44
SsiI CCGC 2 cut(s) 250, 414
SspDI GGCGCC 1 cut(s) 82
SspMI CTAG 5 cut(s) 299, 303, 311, 357, 371
StyD4I CCNGG 7 cut(s) 41, 42, 61, 126, 135, 206, 351
StyI CCWWGG 1 cut(s) 106
TaqI TCGA 1 cut(s) 213
TseI GCWGC 2 cut(s) 89, 188
TspDTI ATGAA 1 cut(s) 300
TspGWI ACGGA 1 cut(s) 241
TspMI CCCGGG 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 133
XmaI CCCGGG 1 cut(s) 42
XspI CTAG 5 cut(s) 299, 303, 311, 357, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.