Rmu_sc0004549.1_g000021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004549.1
OG0000633
Physical Location & Seq
Forward (+)
98960 .. 99381
422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004549.1_g000021.1.cds

Sequence Viewer

Length: 422 bp
atgcgagctgagatcgcagccttcaaagagcagtccaggatcgatcgggaacaacgaagtaccgatagggaaacaaaccgcctcgcgcaacagagaatgcaggatttggaagatgaaaatacggtgctggctcgggcactagacaggaggtaccagcacaacgaggcacttactcaggccctggctagagcatcccagctagcagacctgaacgccgccccgataacaggaactaccaacaccgcaccaacacctcccacggagggcagccagaggttaatccaggtgccggtagacttattcccggaaagcttgaggcatctaccaccaccaccgttacaacagccagttcacagtatcacgctggtacccgacgcaaacacggcattactcgtacaaatgagcaactccttgcatgccct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.72

Weight (kDa)

5.77

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 150, 367
AccB1I GGYRCC 3 cut(s) 150, 286, 367
AccI GTMKAC 1 cut(s) 294
AccII CGCG 1 cut(s) 86
AciI CCGC 3 cut(s) 79, 216, 243
AclWI GGATC 1 cut(s) 47
AfaI GTAC 4 cut(s) 61, 152, 369, 396
AfiI CCNNNNNNNGG 3 cut(s) 227, 263, 289
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 3 cut(s) 35, 180, 282
AluBI AGCT 3 cut(s) 8, 199, 312
AluI AGCT 3 cut(s) 8, 199, 312
AlwI GGATC 1 cut(s) 47
AlwNI CAGNNNCTG 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 17, 267
Asp718I GGTACC 2 cut(s) 150, 367
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 178
AsuC2I CCSGG 1 cut(s) 305
AsuNHI GCTAGC 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 139
BaeI ACNNNNGTAYC 2 cut(s) 351, 384
BanI GGYRCC 3 cut(s) 150, 286, 367
BbvI GCAGC 2 cut(s) 29, 279
BceAI ACGGC 1 cut(s) 399
BciT130I CCWGG 3 cut(s) 37, 182, 284
BcnI CCSGG 1 cut(s) 305
BfaI CTAG 3 cut(s) 140, 186, 200
BisI GCNGC 3 cut(s) 18, 216, 268
BlsI GCNGC 3 cut(s) 19, 217, 269
Bme1390I CCNGG 4 cut(s) 37, 182, 284, 305
BmeT110I CYCGRG 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 3 cut(s) 152, 288, 369
BmrFI CCNGG 4 cut(s) 37, 182, 284, 305
BmsI GCATC 2 cut(s) 200, 328
BmtI GCTAGC 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 334
BpuMI CCSGG 1 cut(s) 305
Bsa29I ATCGAT 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 180, 258
Bsc4I CCNNNNNNNGG 3 cut(s) 227, 263, 289
Bse118I RCCGGY 1 cut(s) 289
Bse1I ACTGG 1 cut(s) 347
BseBI CCWGG 3 cut(s) 37, 182, 284
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 180, 258
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 3 cut(s) 227, 263, 289
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 347
BseSI GKGCMC 1 cut(s) 139
BseXI GCAGC 2 cut(s) 29, 279
BseYI CCCAGC 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 86
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 3 cut(s) 150, 286, 367
BshVI ATCGAT 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 2 cut(s) 290, 305
BslI CCNNNNNNNGG 3 cut(s) 227, 263, 289
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 3 cut(s) 12, 39, 43
BspACI CCGC 3 cut(s) 79, 216, 243
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 187
BspDI ATCGAT 1 cut(s) 42
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 3 cut(s) 152, 288, 369
BspOI GCTAGC 1 cut(s) 203
BspPI GGATC 1 cut(s) 47
BspT107I GGYRCC 3 cut(s) 150, 286, 367
BsrFI RCCGGY 1 cut(s) 289
BsrI ACTGG 1 cut(s) 347
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 180, 258
BssMI GATC 3 cut(s) 12, 39, 43
Bst2UI CCWGG 3 cut(s) 37, 182, 284
Bst4CI ACNGT 3 cut(s) 124, 336, 356
BstC8I GCNNGC 4 cut(s) 6, 129, 201, 417
BstDEI CTNAG 2 cut(s) 9, 174
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 1 cut(s) 191
BstFNI CGCG 1 cut(s) 86
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 3 cut(s) 15, 42, 46
BstMBI GATC 3 cut(s) 12, 39, 43
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 14, 383
BstNI CCWGG 3 cut(s) 37, 182, 284
BstNSI RCATGY 1 cut(s) 419
BstSCI CCNGG 4 cut(s) 35, 180, 282, 303
BstSLI GKGCMC 1 cut(s) 139
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 2 cut(s) 29, 279
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 1 cut(s) 179
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 258
BtsCI GGATG 1 cut(s) 191
Cac8I GCNNGC 4 cut(s) 6, 129, 201, 417
CaiI CAGNNNCTG 1 cut(s) 181
CfoI GCGC 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 178
ClaI ATCGAT 1 cut(s) 42
CseI GACGC 1 cut(s) 383
Csp6I GTAC 4 cut(s) 60, 151, 368, 395
CviAII CATG 1 cut(s) 416
CviJI RGCY 9 cut(s) 8, 20, 131, 179, 185, 199, 270, 312, 346
CviKI_1 RGCY 9 cut(s) 8, 20, 131, 179, 185, 199, 270, 312, 346
CviQI GTAC 4 cut(s) 60, 151, 368, 395
DdeI CTNAG 2 cut(s) 9, 174
DpnI GATC 3 cut(s) 14, 41, 45
DpnII GATC 3 cut(s) 12, 39, 43
Eco88I CYCGRG 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 3 cut(s) 35, 180, 282
FaeI CATG 1 cut(s) 419
FaiI YATR 1 cut(s) 417
FatI CATG 1 cut(s) 415
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 3 cut(s) 18, 216, 268
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 3 cut(s) 18, 216, 268
FspBI CTAG 3 cut(s) 140, 186, 200
GlaI GCGC 1 cut(s) 87
GluI GCNGC 3 cut(s) 18, 216, 268
GsaI CCCAGC 1 cut(s) 199
HaeIII GGCC 1 cut(s) 179
HapII CCGG 2 cut(s) 290, 305
HgaI GACGC 1 cut(s) 383
HhaI GCGC 1 cut(s) 88
Hin1II CATG 1 cut(s) 419
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HindIII AAGCTT 1 cut(s) 310
HpaII CCGG 2 cut(s) 290, 305
Hpy166II GTNNAC 2 cut(s) 295, 352
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 2 cut(s) 295, 352
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 3 cut(s) 124, 336, 356
HpyCH4V TGCA 2 cut(s) 100, 415
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 383
HpyF3I CTNAG 2 cut(s) 9, 174
Hsp92II CATG 1 cut(s) 419
HspAI GCGC 1 cut(s) 86
KpnI GGTACC 2 cut(s) 154, 371
Kzo9I GATC 3 cut(s) 12, 39, 43
Lsp1109I GCAGC 2 cut(s) 29, 279
LweI GCATC 2 cut(s) 200, 328
MaeI CTAG 3 cut(s) 140, 186, 200
MaeIII GTNAC 1 cut(s) 336
MalI GATC 3 cut(s) 14, 41, 45
MboI GATC 3 cut(s) 12, 39, 43
MboII GAAGA 1 cut(s) 122
MhlI GDGCHC 1 cut(s) 139
MnlI CCTC 7 cut(s) 92, 141, 157, 256, 264, 267, 309
MseI TTAA 1 cut(s) 278
MspI CCGG 2 cut(s) 290, 305
MspR9I CCNGG 4 cut(s) 37, 182, 284, 305
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 3 cut(s) 37, 182, 284
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 2 cut(s) 14, 383
NciI CCSGG 1 cut(s) 305
NdeII GATC 3 cut(s) 12, 39, 43
NheI GCTAGC 1 cut(s) 199
NlaIII CATG 1 cut(s) 419
NlaIV GGNNCC 3 cut(s) 152, 288, 369
NspI RCATGY 1 cut(s) 419
PaeI GCATGC 1 cut(s) 419
PcsI WCGNNNNNNNCGW 1 cut(s) 52
PctI GAATGC 1 cut(s) 102
PfoI TCCNGGA 2 cut(s) 35, 303
PkrI GCNGC 3 cut(s) 19, 217, 269
Ple19I CGATCG 1 cut(s) 46
Psp6I CCWGG 3 cut(s) 35, 180, 282
PspFI CCCAGC 1 cut(s) 195
PspGI CCWGG 3 cut(s) 35, 180, 282
PspN4I GGNNCC 3 cut(s) 152, 288, 369
PspPI GGNCC 1 cut(s) 178
PstNI CAGNNNCTG 1 cut(s) 181
PvuI CGATCG 1 cut(s) 46
RsaI GTAC 4 cut(s) 61, 152, 369, 396
RsaNI GTAC 4 cut(s) 60, 151, 368, 395
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 3 cut(s) 18, 216, 268
Sau3AI GATC 3 cut(s) 12, 39, 43
Sau96I GGNCC 1 cut(s) 178
ScrFI CCNGG 4 cut(s) 37, 182, 284, 305
SduI GDGCHC 1 cut(s) 139
SetI ASST 8 cut(s) 10, 152, 201, 210, 256, 278, 288, 314
SfaNI GCATC 2 cut(s) 200, 328
SmlI CTYRAG 1 cut(s) 313
SmoI CTYRAG 1 cut(s) 313
SphI GCATGC 1 cut(s) 419
SsiI CCGC 3 cut(s) 79, 216, 243
SspMI CTAG 3 cut(s) 140, 186, 200
StyD4I CCNGG 4 cut(s) 35, 180, 282, 303
TaaI ACNGT 3 cut(s) 124, 336, 356
TaqI TCGA 1 cut(s) 42
TauI GCSGC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TseI GCWGC 2 cut(s) 17, 267
TspDTI ATGAA 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 275
XceI RCATGY 1 cut(s) 419
XmiI GTMKAC 1 cut(s) 294
XspI CTAG 3 cut(s) 140, 186, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.