Rmu_sc0019345.1_g000006

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019345.1
OG0000633
Physical Location & Seq
Reverse (-)
12080 .. 12547
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019345.1_g000006.1.cds

Sequence Viewer

Length: 468 bp
atgtatgaggtgttcactatcctcaacgcttcatacgagactatttggaacgagaacaaggatgagatacgtagaccaccaccgaggaagttcccgaagagtaaacttacccagcaggataccagaaggttttgtacacatcacgaggacgctgggcacaataccaatctctgtgtggctttaaaacatactatcgagtcacttatccagaggggcaagcttcagcggtacctgcctgcaaaagagattggagctatagacgtgtacggtcaaatcttcaagatccccggtgagggcccgaaagagttgcctccccagaggaagaaacgaaattctagtttcagtcacccggaagttttcaatttccacaaggccccacaacaagatgaaggcaccgggtggaaatcggtcacattcctgcagcaggaggaaactgatttgaagatgcccctgatgatcccttcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

155

Amino Acids

18.02

Weight (kDa)

9.08

Isoelectric Point (pI)

59.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 240
Acc65I GGTACC 1 cut(s) 228
AccB1I GGYRCC 2 cut(s) 228, 392
AccI GTMKAC 1 cut(s) 73
AciI CCGC 1 cut(s) 226
AclWI GGATC 2 cut(s) 277, 451
AcsI RAATTY 1 cut(s) 331
AcuI CTGAAG 1 cut(s) 206
AdeI CACNNNGTG 1 cut(s) 399
AfaI GTAC 3 cut(s) 136, 230, 266
AfiI CCNNNNNNNGG 3 cut(s) 292, 293, 424
AflIII ACRYGT 1 cut(s) 261
AgsI TTSAA 3 cut(s) 280, 361, 442
AjiI CACGTC 1 cut(s) 262
AluBI AGCT 2 cut(s) 220, 254
AluI AGCT 2 cut(s) 220, 254
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 2 cut(s) 277, 451
AoxI GGCC 2 cut(s) 295, 372
ApaI GGGCCC 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 421
ApoI RAATTY 1 cut(s) 331
Asp718I GGTACC 1 cut(s) 228
AspS9I GGNCC 3 cut(s) 295, 296, 373
AsuC2I CCSGG 3 cut(s) 288, 350, 397
AsuHPI GGTGA 2 cut(s) 302, 338
BaeGI GKGCMC 2 cut(s) 159, 299
BanI GGYRCC 2 cut(s) 228, 392
BanII GRGCYC 1 cut(s) 299
BarI GAAGNNNNNNTAC 2 cut(s) 118, 150
BauI CACGAG 1 cut(s) 143
BbvI GCAGC 1 cut(s) 433
BcgI CGANNNNNNTGC 2 cut(s) 289, 323
BciVI GTATCC 1 cut(s) 112
BcnI CCSGG 3 cut(s) 288, 350, 397
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 336
BfmI CTRYAG 2 cut(s) 255, 419
BfuAI ACCTGC 1 cut(s) 240
BfuI GTATCC 1 cut(s) 112
BisI GCNGC 1 cut(s) 422
BlsI GCNGC 1 cut(s) 423
Bme1390I CCNGG 3 cut(s) 288, 350, 397
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 3 cut(s) 295, 296, 373
BmiI GGNNCC 4 cut(s) 230, 297, 375, 394
BmrFI CCNGG 3 cut(s) 288, 350, 397
BmsI GCATC 1 cut(s) 435
BpuMI CCSGG 3 cut(s) 288, 350, 397
BsaAI YACGTR 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 83, 286
Bsc4I CCNNNNNNNGG 3 cut(s) 292, 293, 424
BseDI CCNNGG 2 cut(s) 83, 286
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 3 cut(s) 292, 293, 424
BseSI GKGCMC 2 cut(s) 159, 299
BseXI GCAGC 1 cut(s) 433
BseYI CCCAGC 2 cut(s) 111, 152
BshFI GGCC 2 cut(s) 297, 374
BshNI GGYRCC 2 cut(s) 228, 392
BsiSI CCGG 3 cut(s) 288, 350, 396
BslI CCNNNNNNNGG 3 cut(s) 292, 293, 424
BsmAI GTCTC 1 cut(s) 32
BsnI GGCC 2 cut(s) 297, 374
Bsp120I GGGCCC 1 cut(s) 295
Bsp1286I GDGCHC 2 cut(s) 159, 299
Bsp1407I TGTACA 1 cut(s) 134
Bsp143I GATC 2 cut(s) 282, 456
BspACI CCGC 1 cut(s) 226
BspANI GGCC 2 cut(s) 297, 374
BspLI GGNNCC 4 cut(s) 230, 297, 375, 394
BspMAI CTGCAG 1 cut(s) 423
BspMI ACCTGC 1 cut(s) 240
BspPI GGATC 2 cut(s) 277, 451
BspT107I GGYRCC 2 cut(s) 228, 392
BsrGI TGTACA 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 83, 286
BssMI GATC 2 cut(s) 282, 456
BssSI CACGAG 1 cut(s) 143
Bst2BI CACGAG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 92
BstAUI TGTACA 1 cut(s) 134
BstBAI YACGTR 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 218, 237
BstENI CCTNNNNNAGG 1 cut(s) 422
BstF5I GGATG 1 cut(s) 67
BstKTI GATC 2 cut(s) 285, 459
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 282, 456
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstSCI CCNGG 3 cut(s) 286, 348, 395
BstSFI CTRYAG 2 cut(s) 255, 419
BstSLI GKGCMC 2 cut(s) 159, 299
BstSNI TACGTA 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 433
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BsuI GTATCC 1 cut(s) 112
BsuRI GGCC 2 cut(s) 297, 374
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 1 cut(s) 67
BveI ACCTGC 1 cut(s) 240
Cac8I GCNNGC 2 cut(s) 218, 237
Cfr13I GGNCC 3 cut(s) 295, 296, 373
CseI GACGC 1 cut(s) 158
Csp6I GTAC 3 cut(s) 135, 229, 265
CviJI RGCY 5 cut(s) 179, 220, 254, 297, 374
CviKI_1 RGCY 5 cut(s) 179, 220, 254, 297, 374
CviQI GTAC 3 cut(s) 135, 229, 265
DpnI GATC 2 cut(s) 284, 458
DpnII GATC 2 cut(s) 282, 456
DraI TTTAAA 1 cut(s) 183
DraIII CACNNNGTG 1 cut(s) 399
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco105I TACGTA 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 206
EcoNI CCTNNNNNAGG 1 cut(s) 422
EcoO109I RGGNCCY 2 cut(s) 295, 373
EcoT38I GRGCYC 1 cut(s) 299
FaiI YATR 4 cut(s) 6, 34, 189, 257
FblI GTMKAC 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 422
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 1 cut(s) 422
FspBI CTAG 1 cut(s) 336
GluI GCNGC 1 cut(s) 422
GsaI CCCAGC 2 cut(s) 115, 156
HaeIII GGCC 2 cut(s) 297, 374
HapII CCGG 3 cut(s) 288, 350, 396
HgaI GACGC 1 cut(s) 158
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 1 cut(s) 197
HpaII CCGG 3 cut(s) 288, 350, 396
HphI GGTGA 2 cut(s) 302, 338
Hpy166II GTNNAC 5 cut(s) 15, 74, 104, 137, 265
Hpy188III TCNNGA 5 cut(s) 94, 143, 208, 280, 465
Hpy8I GTNNAC 5 cut(s) 15, 74, 104, 137, 265
HpyAV CCTTC 2 cut(s) 120, 383
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 2 cut(s) 70, 261
HpyCH4V TGCA 2 cut(s) 239, 421
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpySE526I ACGT 2 cut(s) 70, 261
KpnI GGTACC 1 cut(s) 232
Kzo9I GATC 2 cut(s) 282, 456
LmnI GCTCC 1 cut(s) 251
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 1 cut(s) 435
MaeI CTAG 1 cut(s) 336
MaeII ACGT 2 cut(s) 70, 261
MaeIII GTNAC 3 cut(s) 198, 344, 409
MalI GATC 2 cut(s) 284, 458
MboI GATC 2 cut(s) 282, 456
MboII GAAGA 4 cut(s) 109, 268, 334, 454
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 2 cut(s) 159, 299
MluCI AATT 2 cut(s) 331, 361
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 8 cut(s) 32, 78, 139, 204, 286, 312, 321, 421
MseI TTAA 1 cut(s) 182
MspA1I CMGCKG 1 cut(s) 226
MspI CCGG 3 cut(s) 288, 350, 396
MspR9I CCNGG 3 cut(s) 288, 350, 397
MwoI GCNNNNNNNGC 1 cut(s) 232
NciI CCSGG 3 cut(s) 288, 350, 397
NdeII GATC 2 cut(s) 282, 456
NlaIV GGNNCC 4 cut(s) 230, 297, 375, 394
NmuCI GTSAC 3 cut(s) 198, 344, 409
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PkrI GCNGC 1 cut(s) 423
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Ppu21I YACGTR 1 cut(s) 71
PspFI CCCAGC 2 cut(s) 111, 152
PspN4I GGNNCC 4 cut(s) 230, 297, 375, 394
PspOMI GGGCCC 1 cut(s) 295
PspPI GGNCC 3 cut(s) 295, 296, 373
PsrI GAACNNNNNNTAC 1 cut(s) 28
PstI CTGCAG 1 cut(s) 423
PsuI RGATCY 1 cut(s) 282
RsaI GTAC 3 cut(s) 136, 230, 266
RsaNI GTAC 3 cut(s) 135, 229, 265
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 1 cut(s) 422
Sau3AI GATC 2 cut(s) 282, 456
Sau96I GGNCC 3 cut(s) 295, 296, 373
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 3 cut(s) 288, 350, 397
SduI GDGCHC 2 cut(s) 159, 299
SetI ASST 7 cut(s) 12, 73, 131, 222, 234, 256, 264
SfaNI GCATC 1 cut(s) 435
SfcI CTRYAG 2 cut(s) 255, 419
SnaBI TACGTA 1 cut(s) 71
Sse9I AATT 2 cut(s) 331, 361
SsiI CCGC 1 cut(s) 226
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 3 cut(s) 286, 348, 395
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 2 cut(s) 73, 264
TaqI TCGA 1 cut(s) 195
TaqII GACCGA 1 cut(s) 397
TasI AATT 2 cut(s) 331, 361
TatI WGTACW 1 cut(s) 134
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TseFI GTSAC 3 cut(s) 198, 344, 409
TseI GCWGC 1 cut(s) 421
Tsp45I GTSAC 3 cut(s) 198, 344, 409
TspDTI ATGAA 2 cut(s) 21, 402
XagI CCTNNNNNAGG 1 cut(s) 422
XapI RAATTY 1 cut(s) 331
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 73
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.