Rmu_sc0001655.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001655.1
OG0000633
Physical Location & Seq
Forward (+)
56318 .. 57129
812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001655.1_g000010.1.cds

Sequence Viewer

Length: 600 bp
atggcgggcctcacatgggatgccaccctgggcacccagggcccgaggcaaggtcagcacagcccatctatttacacaacaagagggctgataaggcatcagaagaacaacctgtgtcccacatcgaggataggggagactccattcccatacttgagtataaagacattagcacaaccaccttttacgggatttaggagttggatcggtgccccaaacggcatagcattctgtgtgaggtacccggagaaagctaccagaaacattggcgcgccagaggcgccaagtggtcagggagaaatccatggtctcggatccttggacccgatagtctcggatcaggtgactccggtatcggaattggagtctatgcgagctgagatcgcagccttcagggagcaatccaggatcgatcgggaacaacagagtactgataaggaaataaaccgcctcacgcaacagagaatgcaggatttggaagatgaaaacacggcgctggcccgagcactggacaggaggcaccagcacaacgaggcactcactcaggccctggctagagcatcccagctagctagtactataagactaggaccatgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

21.97

Weight (kDa)

7.8

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
Acc65I GGTACC 1 cut(s) 240
AccB1I GGYRCC 5 cut(s) 32, 209, 240, 280, 519
AccII CGCG 1 cut(s) 272
AciI CCGC 2 cut(s) 5, 448
AclWI GGATC 5 cut(s) 212, 309, 322, 345, 416
AcuI CTGAAG 1 cut(s) 376
AcyI GRCGYC 1 cut(s) 281
AfaI GTAC 3 cut(s) 242, 430, 577
AfiI CCNNNNNNNGG 5 cut(s) 16, 50, 126, 188, 508
AjnI CCWGG 4 cut(s) 27, 36, 404, 549
AluBI AGCT 4 cut(s) 254, 377, 568, 572
AluI AGCT 4 cut(s) 254, 377, 568, 572
Alw21I GWGCWC 1 cut(s) 508
Alw26I GTCTC 3 cut(s) 131, 314, 337
AlwI GGATC 5 cut(s) 212, 309, 322, 345, 416
AlwNI CAGNNNCTG 1 cut(s) 550
Ama87I CYCGRG 2 cut(s) 43, 501
AoxI GGCC 4 cut(s) 7, 40, 498, 546
ApaI GGGCCC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 386
AscI GGCGCGCC 1 cut(s) 270
Asp718I GGTACC 1 cut(s) 240
AspLEI GCGC 4 cut(s) 272, 274, 283, 496
AspS9I GGNCC 7 cut(s) 7, 40, 41, 322, 499, 547, 590
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 355
AsuNHI GCTAGC 1 cut(s) 568
AvaI CYCGRG 2 cut(s) 43, 501
AvaII GGWCC 2 cut(s) 322, 590
BaeGI GKGCMC 3 cut(s) 35, 44, 214
BaeI ACNNNNGTAYC 2 cut(s) 336, 369
BamHI GGATCC 1 cut(s) 314
BanI GGYRCC 5 cut(s) 32, 209, 240, 280, 519
BanII GRGCYC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 508
BbvI GCAGC 1 cut(s) 398
BccI CCATC 1 cut(s) 73
BceAI ACGGC 2 cut(s) 235, 507
BciT130I CCWGG 4 cut(s) 29, 38, 406, 551
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 3 cut(s) 131, 314, 337
BfaI CTAG 4 cut(s) 555, 569, 573, 587
BfoI RGCGCY 2 cut(s) 284, 497
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
BmcAI AGTACT 2 cut(s) 430, 577
Bme1390I CCNGG 5 cut(s) 29, 38, 245, 406, 551
Bme18I GGWCC 2 cut(s) 322, 590
BmeT110I CYCGRG 2 cut(s) 43, 501
BmgT120I GGNCC 7 cut(s) 7, 40, 41, 322, 499, 547, 590
BmiI GGNNCC 8 cut(s) 34, 42, 211, 242, 282, 316, 324, 521
BmrFI CCNGG 5 cut(s) 29, 38, 245, 406, 551
BmsI GCATC 3 cut(s) 10, 106, 569
BmtI GCTAGC 1 cut(s) 572
BpuEI CTTGAG 1 cut(s) 175
BpuMI CCSGG 1 cut(s) 245
Bsa29I ATCGAT 1 cut(s) 411
BsaHI GRCGYC 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 314
BsaJI CCNNGG 8 cut(s) 27, 28, 36, 37, 44, 304, 318, 549
BsaWI WCCGGW 1 cut(s) 349
Bsc4I CCNNNNNNNGG 5 cut(s) 16, 50, 126, 188, 508
Bse1I ACTGG 1 cut(s) 513
BseBI CCWGG 4 cut(s) 29, 38, 406, 551
BseCI ATCGAT 1 cut(s) 411
BseDI CCNNGG 8 cut(s) 27, 28, 36, 37, 44, 304, 318, 549
BseGI GGATG 2 cut(s) 25, 560
BseLI CCNNNNNNNGG 5 cut(s) 16, 50, 126, 188, 508
BseMII CTCAG 2 cut(s) 369, 557
BseNI ACTGG 1 cut(s) 513
BsePI GCGCGC 1 cut(s) 270
BseSI GKGCMC 3 cut(s) 35, 44, 214
BseXI GCAGC 1 cut(s) 398
BseYI CCCAGC 1 cut(s) 564
Bsh1236I CGCG 1 cut(s) 272
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 4 cut(s) 9, 42, 500, 548
BshNI GGYRCC 5 cut(s) 32, 209, 240, 280, 519
BshVI ATCGAT 1 cut(s) 411
BsiEI CGRYCG 1 cut(s) 415
BsiHKAI GWGCWC 1 cut(s) 508
BsiHKCI CYCGRG 2 cut(s) 43, 501
BsiSI CCGG 2 cut(s) 245, 350
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 5 cut(s) 16, 50, 126, 188, 508
BsmAI GTCTC 3 cut(s) 131, 314, 337
BsmFI GGGAC 1 cut(s) 102
BsmI GAATGC 2 cut(s) 227, 471
BsnI GGCC 4 cut(s) 9, 42, 500, 548
Bso31I GGTCTC 1 cut(s) 314
BsoBI CYCGRG 2 cut(s) 43, 501
Bsp120I GGGCCC 1 cut(s) 40
Bsp1286I GDGCHC 4 cut(s) 35, 44, 214, 508
Bsp143I GATC 6 cut(s) 204, 314, 337, 381, 408, 412
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 2 cut(s) 5, 448
BspANI GGCC 4 cut(s) 9, 42, 500, 548
BspCNI CTCAG 2 cut(s) 370, 556
BspDI ATCGAT 1 cut(s) 411
BspFNI CGCG 1 cut(s) 272
BspLI GGNNCC 8 cut(s) 34, 42, 211, 242, 282, 316, 324, 521
BspOI GCTAGC 1 cut(s) 572
BspPI GGATC 5 cut(s) 212, 309, 322, 345, 416
BspT107I GGYRCC 5 cut(s) 32, 209, 240, 280, 519
BspTNI GGTCTC 1 cut(s) 314
BsrI ACTGG 1 cut(s) 513
BssECI CCNNGG 8 cut(s) 27, 28, 36, 37, 44, 304, 318, 549
BssHII GCGCGC 1 cut(s) 270
BssMI GATC 6 cut(s) 204, 314, 337, 381, 408, 412
BssNI GRCGYC 1 cut(s) 281
BssT1I CCWWGG 2 cut(s) 304, 318
Bst2UI CCWGG 4 cut(s) 29, 38, 406, 551
BstACI GRCGYC 1 cut(s) 281
BstC8I GCNNGC 5 cut(s) 7, 272, 375, 498, 570
BstDEI CTNAG 2 cut(s) 378, 543
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 2 cut(s) 25, 560
BstFNI CGCG 1 cut(s) 272
BstH2I RGCGCY 2 cut(s) 284, 497
BstHHI GCGC 4 cut(s) 272, 274, 283, 496
BstKTI GATC 6 cut(s) 207, 317, 340, 384, 411, 415
BstMAI GTCTC 3 cut(s) 131, 314, 337
BstMBI GATC 6 cut(s) 204, 314, 337, 381, 408, 412
BstMCI CGRYCG 1 cut(s) 415
BstMWI GCNNNNNNNGC 6 cut(s) 39, 55, 94, 278, 280, 383
BstNI CCWGG 4 cut(s) 29, 38, 406, 551
BstSCI CCNGG 5 cut(s) 27, 36, 243, 404, 549
BstSLI GKGCMC 3 cut(s) 35, 44, 214
BstUI CGCG 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 398
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
Bsu15I ATCGAT 1 cut(s) 411
BsuRI GGCC 4 cut(s) 9, 42, 500, 548
BsuTUI ATCGAT 1 cut(s) 411
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 2 cut(s) 25, 560
BtsIMutI CAGTG 1 cut(s) 506
Cac8I GCNNGC 5 cut(s) 7, 272, 375, 498, 570
CaiI CAGNNNCTG 1 cut(s) 550
CfoI GCGC 4 cut(s) 272, 274, 283, 496
Cfr13I GGNCC 7 cut(s) 7, 40, 41, 322, 499, 547, 590
ClaI ATCGAT 1 cut(s) 411
Csp6I GTAC 3 cut(s) 241, 429, 576
CviAII CATG 3 cut(s) 15, 305, 594
CviQI GTAC 3 cut(s) 241, 429, 576
DdeI CTNAG 2 cut(s) 378, 543
DinI GGCGCC 1 cut(s) 282
DpnI GATC 6 cut(s) 206, 316, 339, 383, 410, 414
DpnII GATC 6 cut(s) 204, 314, 337, 381, 408, 412
DrdI GACNNNNNNGTC 1 cut(s) 329
DseDI GACNNNNNNGTC 1 cut(s) 329
Eco130I CCWWGG 2 cut(s) 304, 318
Eco24I GRGCYC 1 cut(s) 44
Eco31I GGTCTC 1 cut(s) 314
Eco47I GGWCC 2 cut(s) 322, 590
Eco57I CTGAAG 1 cut(s) 376
Eco88I CYCGRG 2 cut(s) 43, 501
EcoO109I RGGNCCY 2 cut(s) 40, 547
EcoRII CCWGG 4 cut(s) 27, 36, 404, 549
EcoT14I CCWWGG 2 cut(s) 304, 318
EcoT38I GRGCYC 1 cut(s) 44
EgeI GGCGCC 1 cut(s) 282
EheI GGCGCC 1 cut(s) 282
ErhI CCWWGG 2 cut(s) 304, 318
FaeI CATG 3 cut(s) 18, 308, 597
FaiI YATR 8 cut(s) 16, 151, 161, 224, 306, 371, 581, 595
FaqI GGGAC 1 cut(s) 102
FatI CATG 3 cut(s) 14, 304, 593
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 2 cut(s) 32, 547
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 387
FspBI CTAG 4 cut(s) 555, 569, 573, 587
GlaI GCGC 4 cut(s) 271, 273, 282, 495
GluI GCNGC 1 cut(s) 387
GsaI CCCAGC 1 cut(s) 568
HaeII RGCGCY 2 cut(s) 284, 497
HaeIII GGCC 4 cut(s) 9, 42, 500, 548
HapII CCGG 2 cut(s) 245, 350
HhaI GCGC 4 cut(s) 272, 274, 283, 496
Hin1I GRCGYC 1 cut(s) 281
Hin1II CATG 3 cut(s) 18, 308, 597
Hin6I GCGC 4 cut(s) 270, 272, 281, 494
HinP1I GCGC 4 cut(s) 270, 272, 281, 494
HinfI GANTC 3 cut(s) 139, 346, 365
HpaII CCGG 2 cut(s) 245, 350
HphI GGTGA 1 cut(s) 355
Hpy188I TCNGA 4 cut(s) 102, 314, 337, 358
Hpy188III TCNNGA 1 cut(s) 416
HpyAV CCTTC 1 cut(s) 400
HpyCH4V TGCA 1 cut(s) 469
HpyF10VI GCNNNNNNNGC 6 cut(s) 39, 55, 94, 278, 280, 383
HpyF3I CTNAG 2 cut(s) 378, 543
Hsp92I GRCGYC 1 cut(s) 281
Hsp92II CATG 3 cut(s) 18, 308, 597
HspAI GCGC 4 cut(s) 270, 272, 281, 494
KasI GGCGCC 1 cut(s) 280
KpnI GGTACC 1 cut(s) 244
Kzo9I GATC 6 cut(s) 204, 314, 337, 381, 408, 412
LmnI GCTCC 1 cut(s) 397
Lsp1109I GCAGC 1 cut(s) 398
LweI GCATC 3 cut(s) 10, 106, 569
MaeI CTAG 4 cut(s) 555, 569, 573, 587
MaeIII GTNAC 1 cut(s) 343
MalI GATC 6 cut(s) 206, 316, 339, 383, 410, 414
MboI GATC 6 cut(s) 204, 314, 337, 381, 408, 412
MboII GAAGA 2 cut(s) 115, 491
MflI RGATCY 1 cut(s) 314
MhlI GDGCHC 4 cut(s) 35, 44, 214, 508
MluCI AATT 1 cut(s) 359
Mly113I GGCGCC 1 cut(s) 281
MlyI GAGTC 3 cut(s) 133, 340, 374
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 9 cut(s) 20, 39, 77, 120, 231, 271, 461, 510, 526
MspI CCGG 2 cut(s) 245, 350
MspR9I CCNGG 5 cut(s) 29, 38, 245, 406, 551
Mva1269I GAATGC 2 cut(s) 227, 471
MvaI CCWGG 4 cut(s) 29, 38, 406, 551
MvnI CGCG 1 cut(s) 272
MwoI GCNNNNNNNGC 6 cut(s) 39, 55, 94, 278, 280, 383
NarI GGCGCC 1 cut(s) 281
NciI CCSGG 1 cut(s) 245
NcoI CCATGG 1 cut(s) 304
NdeII GATC 6 cut(s) 204, 314, 337, 381, 408, 412
NheI GCTAGC 1 cut(s) 568
NlaIII CATG 3 cut(s) 18, 308, 597
NlaIV GGNNCC 8 cut(s) 34, 42, 211, 242, 282, 316, 324, 521
NmuCI GTSAC 1 cut(s) 343
PalAI GGCGCGCC 1 cut(s) 270
PasI CCCWGGG 2 cut(s) 28, 37
PauI GCGCGC 1 cut(s) 270
PctI GAATGC 2 cut(s) 227, 471
PfoI TCCNGGA 1 cut(s) 404
PkrI GCNGC 1 cut(s) 388
Ple19I CGATCG 1 cut(s) 415
PleI GAGTC 3 cut(s) 133, 340, 373
PluTI GGCGCC 1 cut(s) 284
PpsI GAGTC 3 cut(s) 133, 340, 373
Psp6I CCWGG 4 cut(s) 27, 36, 404, 549
PspFI CCCAGC 1 cut(s) 564
PspGI CCWGG 4 cut(s) 27, 36, 404, 549
PspN4I GGNNCC 8 cut(s) 34, 42, 211, 242, 282, 316, 324, 521
PspOMI GGGCCC 1 cut(s) 40
PspPI GGNCC 7 cut(s) 7, 40, 41, 322, 499, 547, 590
PstNI CAGNNNCTG 1 cut(s) 550
PsuI RGATCY 1 cut(s) 314
PteI GCGCGC 1 cut(s) 270
PvuI CGATCG 1 cut(s) 415
RsaI GTAC 3 cut(s) 242, 430, 577
RsaNI GTAC 3 cut(s) 241, 429, 576
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 6 cut(s) 204, 314, 337, 381, 408, 412
Sau96I GGNCC 7 cut(s) 7, 40, 41, 322, 499, 547, 590
ScaI AGTACT 2 cut(s) 430, 577
SchI GAGTC 3 cut(s) 133, 340, 374
ScrFI CCNGG 5 cut(s) 29, 38, 245, 406, 551
SduI GDGCHC 4 cut(s) 35, 44, 214, 508
SetI ASST 9 cut(s) 55, 114, 184, 242, 256, 345, 379, 570, 574
SfaNI GCATC 3 cut(s) 10, 106, 569
SfoI GGCGCC 1 cut(s) 282
SgsI GGCGCGCC 1 cut(s) 270
SinI GGWCC 2 cut(s) 322, 590
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 1 cut(s) 359
SsiI CCGC 2 cut(s) 5, 448
SspDI GGCGCC 1 cut(s) 280
SspMI CTAG 4 cut(s) 555, 569, 573, 587
StyD4I CCNGG 5 cut(s) 27, 36, 243, 404, 549
StyI CCWWGG 2 cut(s) 304, 318
TaqI TCGA 2 cut(s) 125, 411
TasI AATT 1 cut(s) 359
TatI WGTACW 2 cut(s) 428, 575
TscAI CASTG 1 cut(s) 513
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 1 cut(s) 498
TspRI CASTG 1 cut(s) 513
VpaK11BI GGWCC 2 cut(s) 322, 590
XspI CTAG 4 cut(s) 555, 569, 573, 587
ZrmI AGTACT 2 cut(s) 430, 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.