Rmu_sc0000279.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000279.1
OG0000633
Physical Location & Seq
Forward (+)
22785 .. 23594
810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000279.1_g000005.1.cds

Sequence Viewer

Length: 810 bp
atgaatgagccggaagtgacaggagaggagagaagtgtcgctcgggcacttgtattctccccgggtacttcatcagcagaggcgccaggtgttcgggaggaaatgcatggtctcggatccttggacccaatagtcccagatcaggtgactccggtatcggagttagagtctaagcgagctgagatcgcagccttcaaggagcagtccaggatcgatagggaacaacgaggtaccgatagggaaacaaaccgcctcacgcaacagagaatgcaggatttggaagatgaaaatacgacgctggcccgagcactagactggaggcaccagcacaacgaggcacttactcaggccctggctagagcatcccagctagcagacctgaacgccgccccgataacaggaactaccaacaccgcaccagcacctcccacggagggcagccagaggttaatccaggtaccggtagacttattcccagaaaacgtgaggcatctaccaccaccaccgctaccacagccagttcacagtatcgcaccggtacccgacgcaaacacggcattactcgtacaaatgagcaactccttgcatgctctgcaggccagggtacaggccacggaaaacagagacacctggagagctatgaacagttacgaggaccgcccggggcctttcacccaacaggttaggggagccattcaagcgaatacatcgaaaccactgaaaattgcctatacgggagttggggatctgacaggacccgccccggatttcaccctgaaatccgaagtgaccctgcggggcccaccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

29.36

Weight (kDa)

5.23

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
Acc65I GGTACC 3 cut(s) 230, 457, 538
AccB1I GGYRCC 5 cut(s) 82, 230, 321, 457, 538
AccI GTMKAC 1 cut(s) 465
AciI CCGC 7 cut(s) 250, 387, 414, 506, 658, 759, 796
AclWI GGATC 4 cut(s) 111, 124, 218, 753
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 6 cut(s) 67, 232, 459, 540, 567, 606
AfiI CCNNNNNNNGG 4 cut(s) 142, 398, 434, 460
AgeI ACCGGT 2 cut(s) 460, 535
AgsI TTSAA 2 cut(s) 196, 698
AjnI CCWGG 6 cut(s) 85, 206, 351, 453, 599, 629
AluBI AGCT 3 cut(s) 179, 370, 638
AluI AGCT 3 cut(s) 179, 370, 638
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 2 cut(s) 116, 618
AlwI GGATC 4 cut(s) 111, 124, 218, 753
AlwNI CAGNNNCTG 1 cut(s) 352
Ama87I CYCGRG 4 cut(s) 42, 61, 303, 661
AoxI GGCC 6 cut(s) 300, 348, 597, 609, 665, 799
ApaI GGGCCC 1 cut(s) 803
ApeKI GCWGC 2 cut(s) 188, 438
AsiGI ACCGGT 2 cut(s) 460, 535
Asp718I GGTACC 3 cut(s) 230, 457, 538
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 8 cut(s) 124, 301, 349, 655, 665, 755, 799, 800
AsuC2I CCSGG 5 cut(s) 62, 63, 662, 663, 764
AsuHPI GGTGA 3 cut(s) 157, 664, 763
AsuNHI GCTAGC 1 cut(s) 370
AvaI CYCGRG 4 cut(s) 42, 61, 303, 661
AvaII GGWCC 3 cut(s) 124, 655, 755
BaeGI GKGCMC 2 cut(s) 49, 803
BaeI ACNNNNGTAYC 2 cut(s) 138, 171
BamHI GGATCC 1 cut(s) 116
BanI GGYRCC 5 cut(s) 82, 230, 321, 457, 538
BanII GRGCYC 1 cut(s) 803
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 2 cut(s) 200, 450
BceAI ACGGC 1 cut(s) 570
BciT130I CCWGG 6 cut(s) 87, 208, 353, 455, 601, 631
BcnI CCSGG 5 cut(s) 62, 63, 662, 663, 764
BcoDI GTCTC 2 cut(s) 116, 618
BfaI CTAG 3 cut(s) 311, 357, 371
BfmI CTRYAG 1 cut(s) 593
BfoI RGCGCY 1 cut(s) 86
BisI GCNGC 3 cut(s) 189, 387, 439
BlsI GCNGC 3 cut(s) 190, 388, 440
Bme18I GGWCC 3 cut(s) 124, 655, 755
BmeT110I CYCGRG 4 cut(s) 42, 61, 303, 661
BmgT120I GGNCC 8 cut(s) 124, 301, 349, 655, 665, 755, 799, 800
BmsI GCATC 2 cut(s) 371, 499
BmtI GCTAGC 1 cut(s) 374
BpmI CTGGAG 2 cut(s) 337, 652
BpuMI CCSGG 5 cut(s) 62, 63, 662, 663, 764
Bsa29I ATCGAT 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 116
BsaWI WCCGGW 3 cut(s) 151, 460, 535
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 398, 434, 460
Bse118I RCCGGY 2 cut(s) 460, 535
Bse1I ACTGG 2 cut(s) 320, 518
BseBI CCWGG 6 cut(s) 87, 208, 353, 455, 601, 631
BseCI ATCGAT 1 cut(s) 213
BseGI GGATG 1 cut(s) 362
BseLI CCNNNNNNNGG 4 cut(s) 142, 398, 434, 460
BseMII CTCAG 2 cut(s) 171, 359
BseNI ACTGG 2 cut(s) 320, 518
BseRI GAGGAG 1 cut(s) 41
BseSI GKGCMC 2 cut(s) 49, 803
BseXI GCAGC 2 cut(s) 200, 450
BseYI CCCAGC 1 cut(s) 366
BshFI GGCC 6 cut(s) 302, 350, 599, 611, 667, 801
BshNI GGYRCC 5 cut(s) 82, 230, 321, 457, 538
BshTI ACCGGT 2 cut(s) 460, 535
BshVI ATCGAT 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 310
BsiHKCI CYCGRG 4 cut(s) 42, 61, 303, 661
BsiSI CCGG 7 cut(s) 11, 62, 152, 461, 536, 662, 764
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 4 cut(s) 142, 398, 434, 460
BsmAI GTCTC 2 cut(s) 116, 618
BsmFI GGGAC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 273
BsnI GGCC 6 cut(s) 302, 350, 599, 611, 667, 801
Bso31I GGTCTC 1 cut(s) 116
BsoBI CYCGRG 4 cut(s) 42, 61, 303, 661
Bsp120I GGGCCC 1 cut(s) 799
Bsp1286I GDGCHC 3 cut(s) 49, 310, 803
Bsp143I GATC 5 cut(s) 116, 139, 183, 210, 745
BspACI CCGC 7 cut(s) 250, 387, 414, 506, 658, 759, 796
BspANI GGCC 6 cut(s) 302, 350, 599, 611, 667, 801
BspCNI CTCAG 2 cut(s) 172, 358
BspDI ATCGAT 1 cut(s) 213
BspMAI CTGCAG 1 cut(s) 597
BspOI GCTAGC 1 cut(s) 374
BspPI GGATC 4 cut(s) 111, 124, 218, 753
BspT107I GGYRCC 5 cut(s) 82, 230, 321, 457, 538
BspTNI GGTCTC 1 cut(s) 116
BsrFI RCCGGY 2 cut(s) 460, 535
BsrI ACTGG 2 cut(s) 320, 518
BssAI RCCGGY 2 cut(s) 460, 535
BssMI GATC 5 cut(s) 116, 139, 183, 210, 745
BssNI GRCGYC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 6 cut(s) 87, 208, 353, 455, 601, 631
Bst4CI ACNGT 2 cut(s) 527, 647
BstACI GRCGYC 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 592
BstC8I GCNNGC 5 cut(s) 177, 300, 372, 588, 597
BstDEI CTNAG 4 cut(s) 171, 180, 345, 807
BstDSI CCRYGG 2 cut(s) 429, 612
BstF5I GGATG 1 cut(s) 362
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 5 cut(s) 119, 142, 186, 213, 748
BstMAI GTCTC 2 cut(s) 116, 618
BstMBI GATC 5 cut(s) 116, 139, 183, 210, 745
BstMWI GCNNNNNNNGC 6 cut(s) 185, 514, 554, 592, 596, 698
BstNI CCWGG 6 cut(s) 87, 208, 353, 455, 601, 631
BstNSI RCATGY 1 cut(s) 590
BstSFI CTRYAG 1 cut(s) 593
BstSLI GKGCMC 2 cut(s) 49, 803
BstV1I GCAGC 2 cut(s) 200, 450
BstX2I RGATCY 2 cut(s) 116, 745
BstYI RGATCY 2 cut(s) 116, 745
Bsu15I ATCGAT 1 cut(s) 213
BsuRI GGCC 6 cut(s) 302, 350, 599, 611, 667, 801
BsuTUI ATCGAT 1 cut(s) 213
BtgI CCRYGG 2 cut(s) 429, 612
BtsCI GGATG 1 cut(s) 362
BtsIMutI CAGTG 1 cut(s) 716
Cac8I GCNNGC 5 cut(s) 177, 300, 372, 588, 597
CaiI CAGNNNCTG 1 cut(s) 352
CfoI GCGC 1 cut(s) 85
Cfr10I RCCGGY 2 cut(s) 460, 535
Cfr13I GGNCC 8 cut(s) 124, 301, 349, 655, 665, 755, 799, 800
Cfr9I CCCGGG 2 cut(s) 61, 661
ClaI ATCGAT 1 cut(s) 213
CseI GACGC 2 cut(s) 304, 554
Csp6I GTAC 6 cut(s) 66, 231, 458, 539, 566, 605
CspAI ACCGGT 2 cut(s) 460, 535
CviAII CATG 2 cut(s) 107, 587
CviQI GTAC 6 cut(s) 66, 231, 458, 539, 566, 605
DdeI CTNAG 4 cut(s) 171, 180, 345, 807
DinI GGCGCC 1 cut(s) 84
DpnI GATC 5 cut(s) 118, 141, 185, 212, 747
DpnII GATC 5 cut(s) 116, 139, 183, 210, 745
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 803
Eco31I GGTCTC 1 cut(s) 116
Eco47I GGWCC 3 cut(s) 124, 655, 755
Eco88I CYCGRG 4 cut(s) 42, 61, 303, 661
EcoO109I RGGNCCY 4 cut(s) 349, 665, 755, 799
EcoRII CCWGG 6 cut(s) 85, 206, 351, 453, 599, 629
EcoT14I CCWWGG 1 cut(s) 120
EcoT22I ATGCAT 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 803
EgeI GGCGCC 1 cut(s) 84
EheI GGCGCC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 2 cut(s) 110, 590
FaiI YATR 4 cut(s) 108, 588, 641, 732
FaqI GGGAC 1 cut(s) 119
FatI CATG 2 cut(s) 106, 586
FauI CCCGC 2 cut(s) 766, 789
FblI GTMKAC 1 cut(s) 465
Fnu4HI GCNGC 3 cut(s) 189, 387, 439
FokI GGATG 1 cut(s) 349
FriOI GRGCYC 1 cut(s) 803
Fsp4HI GCNGC 3 cut(s) 189, 387, 439
FspBI CTAG 3 cut(s) 311, 357, 371
GlaI GCGC 1 cut(s) 84
GluI GCNGC 3 cut(s) 189, 387, 439
GsaI CCCAGC 1 cut(s) 370
GsuI CTGGAG 2 cut(s) 337, 652
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 6 cut(s) 302, 350, 599, 611, 667, 801
HapII CCGG 7 cut(s) 11, 62, 152, 461, 536, 662, 764
HgaI GACGC 2 cut(s) 304, 554
HhaI GCGC 1 cut(s) 85
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 2 cut(s) 110, 590
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HinfI GANTC 2 cut(s) 148, 167
HpaII CCGG 7 cut(s) 11, 62, 152, 461, 536, 662, 764
HphI GGTGA 3 cut(s) 157, 664, 763
Hpy166II GTNNAC 2 cut(s) 466, 523
Hpy188I TCNGA 4 cut(s) 116, 160, 750, 784
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 2 cut(s) 466, 523
Hpy99I CGWCG 2 cut(s) 298, 548
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 2 cut(s) 527, 647
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 4 cut(s) 106, 271, 586, 595
HpyF10VI GCNNNNNNNGC 6 cut(s) 185, 514, 554, 592, 596, 698
HpyF3I CTNAG 4 cut(s) 171, 180, 345, 807
HpySE526I ACGT 1 cut(s) 483
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 2 cut(s) 110, 590
HspAI GCGC 1 cut(s) 83
KasI GGCGCC 1 cut(s) 82
KpnI GGTACC 3 cut(s) 234, 461, 542
Kzo9I GATC 5 cut(s) 116, 139, 183, 210, 745
LmnI GCTCC 2 cut(s) 199, 689
Lsp1109I GCAGC 2 cut(s) 200, 450
LweI GCATC 2 cut(s) 371, 499
MaeI CTAG 3 cut(s) 311, 357, 371
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 4 cut(s) 16, 145, 647, 787
MalI GATC 5 cut(s) 118, 141, 185, 212, 747
MboI GATC 5 cut(s) 116, 139, 183, 210, 745
MboII GAAGA 1 cut(s) 293
MflI RGATCY 2 cut(s) 116, 745
MhlI GDGCHC 3 cut(s) 49, 310, 803
MluCI AATT 1 cut(s) 723
Mly113I GGCGCC 1 cut(s) 83
MlyI GAGTC 2 cut(s) 142, 176
Mph1103I ATGCAT 1 cut(s) 108
MseI TTAA 1 cut(s) 449
MspI CCGG 7 cut(s) 11, 62, 152, 461, 536, 662, 764
Mva1269I GAATGC 1 cut(s) 273
MvaI CCWGG 6 cut(s) 87, 208, 353, 455, 601, 631
MwoI GCNNNNNNNGC 6 cut(s) 185, 514, 554, 592, 596, 698
NarI GGCGCC 1 cut(s) 83
NciI CCSGG 5 cut(s) 62, 63, 662, 663, 764
NdeII GATC 5 cut(s) 116, 139, 183, 210, 745
NheI GCTAGC 1 cut(s) 370
NlaIII CATG 2 cut(s) 110, 590
NmuCI GTSAC 3 cut(s) 16, 145, 787
NsiI ATGCAT 1 cut(s) 108
NspI RCATGY 1 cut(s) 590
PaeI GCATGC 1 cut(s) 590
PctI GAATGC 1 cut(s) 273
PfoI TCCNGGA 1 cut(s) 206
PinAI ACCGGT 2 cut(s) 460, 535
PkrI GCNGC 3 cut(s) 190, 388, 440
PleI GAGTC 2 cut(s) 142, 175
PluTI GGCGCC 1 cut(s) 86
PpsI GAGTC 2 cut(s) 142, 175
PpuMI RGGWCCY 1 cut(s) 755
Psp5II RGGWCCY 1 cut(s) 755
Psp6I CCWGG 6 cut(s) 85, 206, 351, 453, 599, 629
PspFI CCCAGC 1 cut(s) 366
PspGI CCWGG 6 cut(s) 85, 206, 351, 453, 599, 629
PspOMI GGGCCC 1 cut(s) 799
PspPI GGNCC 8 cut(s) 124, 301, 349, 655, 665, 755, 799, 800
PspPPI RGGWCCY 1 cut(s) 755
PstI CTGCAG 1 cut(s) 597
PstNI CAGNNNCTG 1 cut(s) 352
PsuI RGATCY 2 cut(s) 116, 745
RsaI GTAC 6 cut(s) 67, 232, 459, 540, 567, 606
RsaNI GTAC 6 cut(s) 66, 231, 458, 539, 566, 605
SaqAI TTAA 1 cut(s) 449
SatI GCNGC 3 cut(s) 189, 387, 439
Sau3AI GATC 5 cut(s) 116, 139, 183, 210, 745
Sau96I GGNCC 8 cut(s) 124, 301, 349, 655, 665, 755, 799, 800
SchI GAGTC 2 cut(s) 142, 176
SduI GDGCHC 3 cut(s) 49, 310, 803
SfaNI GCATC 2 cut(s) 371, 499
SfcI CTRYAG 1 cut(s) 593
SfoI GGCGCC 1 cut(s) 84
SinI GGWCC 3 cut(s) 124, 655, 755
SmaI CCCGGG 2 cut(s) 63, 663
SphI GCATGC 1 cut(s) 590
Sse9I AATT 1 cut(s) 723
SsiI CCGC 7 cut(s) 250, 387, 414, 506, 658, 759, 796
SspDI GGCGCC 1 cut(s) 82
SspMI CTAG 3 cut(s) 311, 357, 371
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 2 cut(s) 527, 647
TaiI ACGT 1 cut(s) 486
TaqI TCGA 2 cut(s) 213, 710
TasI AATT 1 cut(s) 723
TauI GCSGC 1 cut(s) 389
Tru1I TTAA 1 cut(s) 449
Tru9I TTAA 1 cut(s) 449
TscAI CASTG 1 cut(s) 723
TseFI GTSAC 3 cut(s) 16, 145, 787
TseI GCWGC 2 cut(s) 188, 438
Tsp45I GTSAC 3 cut(s) 16, 145, 787
TspDTI ATGAA 4 cut(s) 17, 60, 300, 656
TspGWI ACGGA 2 cut(s) 446, 629
TspMI CCCGGG 2 cut(s) 61, 661
TspRI CASTG 1 cut(s) 723
VpaK11BI GGWCC 3 cut(s) 124, 655, 755
XceI RCATGY 1 cut(s) 590
XmaI CCCGGG 2 cut(s) 61, 661
XmiI GTMKAC 1 cut(s) 465
XspI CTAG 3 cut(s) 311, 357, 371
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.