Rroxscaffold_3G00249740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000633
Physical Location & Seq
Reverse (-)
43529445 .. 43530132
688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00249740.1

Sequence Viewer

Length: 324 bp
ATGTGTGGTAACAGGGAAGTCCGAAGACTGTTCCCGTCCCTGTCAGGGGAGATGCCAACCATCTCTCCTTTCTACGAACACAAGCAGAGAGCATTTGCTCACACATTTGAAATTTGGGTTCTGATTAAGGTTGAAGGGAATCAAGATGTACATACTAGGGAAGTCTCCACTAGGTTTGGCACTGTTAATTATGATCCCTTAGTACCCCCACAGTACTATACCATGGGCCGGGTTCACGACCCACCATGGCAGGACTCGTATGGGGTGTCACCTCAGCCGCCCAAGGCCCAGGGCAAGGCTGGCACAACCCACCTAATTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.23

Weight (kDa)

7.94

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 278
AclWI GGATC 1 cut(s) 188
AcsI RAATTY 1 cut(s) 111
AfaI GTAC 3 cut(s) 150, 204, 215
AfiI CCNNNNNNNGG 4 cut(s) 45, 46, 228, 295
AgsI TTSAA 2 cut(s) 110, 134
AjnI CCWGG 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 1 cut(s) 188
AoxI GGCC 2 cut(s) 226, 285
ApoI RAATTY 1 cut(s) 111
AspS9I GGNCC 2 cut(s) 226, 286
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 31
BbvCI CCTCAGC 1 cut(s) 273
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 290
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 2 cut(s) 156, 171
BisI GCNGC 1 cut(s) 278
BlsI GCNGC 1 cut(s) 279
BmcAI AGTACT 1 cut(s) 215
Bme1390I CCNGG 2 cut(s) 230, 290
BmgT120I GGNCC 2 cut(s) 226, 286
BmrFI CCNGG 2 cut(s) 230, 290
BmsI GCATC 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 273
BpuMI CCSGG 1 cut(s) 230
BsaJI CCNNGG 5 cut(s) 222, 245, 282, 288, 289
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bsc4I CCNNNNNNNGG 4 cut(s) 45, 46, 228, 295
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 5 cut(s) 222, 245, 282, 288, 289
BseLI CCNNNNNNNGG 4 cut(s) 45, 46, 228, 295
BseMII CTCAG 1 cut(s) 287
BshFI GGCC 2 cut(s) 228, 287
BsiSI CCGG 1 cut(s) 229
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 4 cut(s) 45, 46, 228, 295
BsmAI GTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 2 cut(s) 228, 287
Bsp1407I TGTACA 1 cut(s) 148
Bsp143I GATC 1 cut(s) 193
Bsp19I CCATGG 2 cut(s) 222, 245
BspACI CCGC 1 cut(s) 278
BspANI GGCC 2 cut(s) 228, 287
BspCNI CTCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 188
BsrGI TGTACA 1 cut(s) 148
BssECI CCNNGG 5 cut(s) 222, 245, 282, 288, 289
BssMI GATC 1 cut(s) 193
BssT1I CCWWGG 3 cut(s) 222, 245, 282
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 3 cut(s) 30, 184, 213
BstAUI TGTACA 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 2 cut(s) 199, 273
BstDSI CCRYGG 2 cut(s) 222, 245
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstNI CCWGG 1 cut(s) 290
BstSCI CCNGG 2 cut(s) 228, 288
BstV2I GAAGAC 1 cut(s) 31
BsuRI GGCC 2 cut(s) 228, 287
BtgI CCRYGG 2 cut(s) 222, 245
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 301
Cfr13I GGNCC 2 cut(s) 226, 286
Csp6I GTAC 3 cut(s) 149, 203, 214
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 2 cut(s) 223, 246
CviJI RGCY 4 cut(s) 228, 277, 287, 299
CviKI_1 RGCY 4 cut(s) 228, 277, 287, 299
CviQI GTAC 3 cut(s) 149, 203, 214
DdeI CTNAG 2 cut(s) 199, 273
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eco130I CCWWGG 3 cut(s) 222, 245, 282
EcoRII CCWGG 1 cut(s) 288
EcoT14I CCWWGG 3 cut(s) 222, 245, 282
ErhI CCWWGG 3 cut(s) 222, 245, 282
FaeI CATG 2 cut(s) 226, 249
FaiI YATR 7 cut(s) 153, 192, 219, 224, 247, 261, 322
FaqI GGGAC 1 cut(s) 22
FatI CATG 2 cut(s) 222, 245
Fnu4HI GCNGC 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 278
FspBI CTAG 2 cut(s) 156, 171
GluI GCNGC 1 cut(s) 278
HaeIII GGCC 2 cut(s) 228, 287
HapII CCGG 1 cut(s) 229
Hin1II CATG 2 cut(s) 226, 249
HinfI GANTC 2 cut(s) 139, 254
HpaII CCGG 1 cut(s) 229
HphI GGTGA 1 cut(s) 261
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 2 cut(s) 23, 123
Hpy188III TCNNGA 2 cut(s) 143, 236
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 3 cut(s) 30, 184, 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
HpyF3I CTNAG 2 cut(s) 199, 273
Hsp92II CATG 2 cut(s) 226, 249
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 7 cut(s) 30, 53, 236, 242, 275, 285, 302
LweI GCATC 1 cut(s) 42
MaeI CTAG 2 cut(s) 156, 171
MaeIII GTNAC 2 cut(s) 8, 267
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 1 cut(s) 36
MluCI AATT 3 cut(s) 111, 187, 315
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 1 cut(s) 282
MseI TTAA 2 cut(s) 126, 186
MspI CCGG 1 cut(s) 229
MspR9I CCNGG 2 cut(s) 230, 290
MvaI CCWGG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 300
NciI CCSGG 1 cut(s) 230
NcoI CCATGG 2 cut(s) 222, 245
NdeII GATC 1 cut(s) 193
NlaIII CATG 2 cut(s) 226, 249
NmuCI GTSAC 1 cut(s) 267
PasI CCCWGGG 1 cut(s) 289
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 1 cut(s) 279
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PspPI GGNCC 2 cut(s) 226, 286
RsaI GTAC 3 cut(s) 150, 204, 215
RsaNI GTAC 3 cut(s) 149, 203, 214
SaqAI TTAA 2 cut(s) 126, 186
SatI GCNGC 1 cut(s) 278
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 2 cut(s) 226, 286
ScaI AGTACT 1 cut(s) 215
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 230, 290
SetI ASST 4 cut(s) 132, 176, 274, 315
SfaNI GCATC 1 cut(s) 42
Sse9I AATT 3 cut(s) 111, 187, 315
SsiI CCGC 1 cut(s) 278
SspMI CTAG 2 cut(s) 156, 171
StyD4I CCNGG 2 cut(s) 228, 288
StyI CCWWGG 3 cut(s) 222, 245, 282
TaaI ACNGT 3 cut(s) 30, 184, 213
TasI AATT 3 cut(s) 111, 187, 315
TatI WGTACW 2 cut(s) 148, 213
TauI GCSGC 1 cut(s) 280
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 2 cut(s) 126, 186
Tru9I TTAA 2 cut(s) 126, 186
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 267
Tsp45I GTSAC 1 cut(s) 267
TspRI CASTG 1 cut(s) 187
XapI RAATTY 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 296
XspI CTAG 2 cut(s) 156, 171
ZrmI AGTACT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.