Rmu_sc0009806.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009806.1
OG0000633
Physical Location & Seq
Forward (+)
33588 .. 34369
782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009806.1_g000012.1.cds

Sequence Viewer

Length: 531 bp
atggttctcgtcagggacggtatcccgggcacagaggggtccgcaccagaccagtacagctttaggagttggatcggtaccccagacggtatagcattctatgtgaggtactcggagaaagccaccagaaacattggtgggccagataggggacttctcatgacagagccggaagaaactgtaggagagggtagaagtgtcgcccgggcactgatattctctctgggtacttcatcagtagggcttacaccaagtatcggagaggcgcatggtctcggatccttggaccagcagaacgcagatgacccatcggtcatccaggaccaggtggccccggtatcagagctggagtctatgcgattagagatagtagctttccgggaacaacagagagtcgatagggaaacaaacctcctttcgcaacaaagactaaaggaactagaagatgaaaacactgcactggcccgagcattggacagaaggcaccaacataatgaggcactcacccaagccctagcaagagcatcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.27

Weight (kDa)

4.84

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 311
Acc65I GGTACC 1 cut(s) 77
AccB1I GGYRCC 2 cut(s) 77, 483
AciI CCGC 1 cut(s) 42
AclWI GGATC 3 cut(s) 80, 273, 286
AfaI GTAC 4 cut(s) 56, 79, 110, 229
AfiI CCNNNNNNNGG 4 cut(s) 149, 257, 325, 472
AjnI CCWGG 2 cut(s) 318, 324
AluBI AGCT 3 cut(s) 60, 346, 374
AluI AGCT 3 cut(s) 60, 346, 374
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 3 cut(s) 80, 273, 286
Ama87I CYCGRG 3 cut(s) 25, 204, 465
AoxI GGCC 3 cut(s) 140, 330, 462
Asp718I GGTACC 1 cut(s) 77
AspLEI GCGC 1 cut(s) 268
AspS9I GGNCC 6 cut(s) 39, 140, 286, 322, 331, 463
AsuC2I CCSGG 6 cut(s) 26, 27, 205, 206, 335, 380
AsuHPI GGTGA 1 cut(s) 496
AvaI CYCGRG 3 cut(s) 25, 204, 465
AvaII GGWCC 3 cut(s) 39, 286, 322
BaeGI GKGCMC 2 cut(s) 32, 211
BamHI GGATCC 1 cut(s) 278
BanI GGYRCC 2 cut(s) 77, 483
BccI CCATC 1 cut(s) 316
BciT130I CCWGG 2 cut(s) 320, 326
BciVI GTATCC 1 cut(s) 32
BcnI CCSGG 6 cut(s) 26, 27, 205, 206, 335, 380
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 3 cut(s) 440, 515, 529
BfmI CTRYAG 1 cut(s) 180
BfuI GTATCC 1 cut(s) 32
Bme1390I CCNGG 8 cut(s) 26, 27, 205, 206, 320, 326, 335, 380
Bme18I GGWCC 3 cut(s) 39, 286, 322
BmeT110I CYCGRG 3 cut(s) 25, 204, 465
BmgT120I GGNCC 6 cut(s) 39, 140, 286, 322, 331, 463
BmiI GGNNCC 5 cut(s) 40, 79, 280, 333, 485
BmrFI CCNGG 8 cut(s) 26, 27, 205, 206, 320, 326, 335, 380
BpmI CTGGAG 1 cut(s) 368
BpuMI CCSGG 6 cut(s) 26, 27, 205, 206, 335, 380
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 4 cut(s) 25, 204, 282, 333
Bsc4I CCNNNNNNNGG 4 cut(s) 149, 257, 325, 472
Bse1I ACTGG 2 cut(s) 52, 465
BseBI CCWGG 2 cut(s) 320, 326
BseDI CCNNGG 4 cut(s) 25, 204, 282, 333
BseGI GGATG 2 cut(s) 315, 524
BseLI CCNNNNNNNGG 4 cut(s) 149, 257, 325, 472
BseNI ACTGG 2 cut(s) 52, 465
BseSI GKGCMC 2 cut(s) 32, 211
BsgI GTGCAG 1 cut(s) 441
BshFI GGCC 3 cut(s) 142, 332, 464
BshNI GGYRCC 2 cut(s) 77, 483
BsiHKCI CYCGRG 3 cut(s) 25, 204, 465
BsiSI CCGG 5 cut(s) 26, 170, 205, 335, 379
BslFI GGGAC 2 cut(s) 29, 165
BslI CCNNNNNNNGG 4 cut(s) 149, 257, 325, 472
BsmAI GTCTC 1 cut(s) 278
BsmFI GGGAC 2 cut(s) 29, 165
BsmI GAATGC 1 cut(s) 95
BsnI GGCC 3 cut(s) 142, 332, 464
Bso31I GGTCTC 1 cut(s) 278
BsoBI CYCGRG 3 cut(s) 25, 204, 465
Bsp1286I GDGCHC 2 cut(s) 32, 211
Bsp143I GATC 2 cut(s) 72, 278
BspACI CCGC 1 cut(s) 42
BspANI GGCC 3 cut(s) 142, 332, 464
BspHI TCATGA 1 cut(s) 159
BspLI GGNNCC 5 cut(s) 40, 79, 280, 333, 485
BspPI GGATC 3 cut(s) 80, 273, 286
BspT107I GGYRCC 2 cut(s) 77, 483
BspTNI GGTCTC 1 cut(s) 278
BsrI ACTGG 2 cut(s) 52, 465
BssECI CCNNGG 4 cut(s) 25, 204, 282, 333
BssMI GATC 2 cut(s) 72, 278
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 2 cut(s) 320, 326
Bst4CI ACNGT 3 cut(s) 20, 89, 181
BstF5I GGATG 2 cut(s) 315, 524
BstHHI GCGC 1 cut(s) 268
BstKTI GATC 2 cut(s) 75, 281
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 2 cut(s) 72, 278
BstNI CCWGG 2 cut(s) 320, 326
BstSCI CCNGG 8 cut(s) 24, 25, 203, 204, 318, 324, 333, 378
BstSFI CTRYAG 1 cut(s) 180
BstSLI GKGCMC 2 cut(s) 32, 211
BstX2I RGATCY 1 cut(s) 278
BstYI RGATCY 1 cut(s) 278
BsuI GTATCC 1 cut(s) 32
BsuRI GGCC 3 cut(s) 142, 332, 464
BtsCI GGATG 2 cut(s) 315, 524
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 3 cut(s) 209, 453, 458
CciI TCATGA 1 cut(s) 159
CfoI GCGC 1 cut(s) 268
Cfr13I GGNCC 6 cut(s) 39, 140, 286, 322, 331, 463
Cfr9I CCCGGG 2 cut(s) 25, 204
CsiI ACCWGGT 1 cut(s) 324
Csp6I GTAC 4 cut(s) 55, 78, 109, 228
CviAII CATG 2 cut(s) 160, 269
CviQI GTAC 4 cut(s) 55, 78, 109, 228
DpnI GATC 2 cut(s) 74, 280
DpnII GATC 2 cut(s) 72, 278
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
Eco130I CCWWGG 1 cut(s) 282
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 3 cut(s) 39, 286, 322
Eco88I CYCGRG 3 cut(s) 25, 204, 465
EcoRII CCWGG 2 cut(s) 318, 324
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 2 cut(s) 163, 272
FaiI YATR 6 cut(s) 92, 102, 161, 270, 356, 492
FaqI GGGAC 2 cut(s) 29, 165
FatI CATG 2 cut(s) 159, 268
FokI GGATG 2 cut(s) 302, 511
FspBI CTAG 3 cut(s) 440, 515, 529
GlaI GCGC 1 cut(s) 267
GsuI CTGGAG 1 cut(s) 368
HaeIII GGCC 3 cut(s) 142, 332, 464
HapII CCGG 5 cut(s) 26, 170, 205, 335, 379
HhaI GCGC 1 cut(s) 268
Hin1II CATG 2 cut(s) 163, 272
Hin6I GCGC 1 cut(s) 266
HinP1I GCGC 1 cut(s) 266
HinfI GANTC 2 cut(s) 350, 393
HpaII CCGG 5 cut(s) 26, 170, 205, 335, 379
HphI GGTGA 1 cut(s) 496
Hpy188I TCNGA 4 cut(s) 115, 260, 278, 343
Hpy188III TCNNGA 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 474
HpyCH4III ACNGT 3 cut(s) 20, 89, 181
HpyCH4V TGCA 1 cut(s) 458
Hsp92II CATG 2 cut(s) 163, 272
HspAI GCGC 1 cut(s) 266
KpnI GGTACC 1 cut(s) 81
Kzo9I GATC 2 cut(s) 72, 278
MabI ACCWGGT 1 cut(s) 324
MaeI CTAG 3 cut(s) 440, 515, 529
MalI GATC 2 cut(s) 74, 280
MboI GATC 2 cut(s) 72, 278
MboII GAAGA 2 cut(s) 185, 455
MflI RGATCY 1 cut(s) 278
MhlI GDGCHC 2 cut(s) 32, 211
MlyI GAGTC 2 cut(s) 359, 402
MmeI TCCRAC 1 cut(s) 50
MnlI CCTC 6 cut(s) 28, 99, 181, 256, 422, 490
MspI CCGG 5 cut(s) 26, 170, 205, 335, 379
MspR9I CCNGG 8 cut(s) 26, 27, 205, 206, 320, 326, 335, 380
Mva1269I GAATGC 1 cut(s) 95
MvaI CCWGG 2 cut(s) 320, 326
NciI CCSGG 6 cut(s) 26, 27, 205, 206, 335, 380
NdeII GATC 2 cut(s) 72, 278
NlaIII CATG 2 cut(s) 163, 272
NlaIV GGNNCC 5 cut(s) 40, 79, 280, 333, 485
PagI TCATGA 1 cut(s) 159
PctI GAATGC 1 cut(s) 95
PfoI TCCNGGA 2 cut(s) 318, 378
PleI GAGTC 2 cut(s) 358, 401
PpsI GAGTC 2 cut(s) 358, 401
Psp6I CCWGG 2 cut(s) 318, 324
PspGI CCWGG 2 cut(s) 318, 324
PspN4I GGNNCC 5 cut(s) 40, 79, 280, 333, 485
PspPI GGNCC 6 cut(s) 39, 140, 286, 322, 331, 463
PsuI RGATCY 1 cut(s) 278
RsaI GTAC 4 cut(s) 56, 79, 110, 229
RsaNI GTAC 4 cut(s) 55, 78, 109, 228
Sau3AI GATC 2 cut(s) 72, 278
Sau96I GGNCC 6 cut(s) 39, 140, 286, 322, 331, 463
SchI GAGTC 2 cut(s) 359, 402
ScrFI CCNGG 8 cut(s) 26, 27, 205, 206, 320, 326, 335, 380
SduI GDGCHC 2 cut(s) 32, 211
SetI ASST 6 cut(s) 62, 110, 330, 348, 376, 414
SexAI ACCWGGT 1 cut(s) 324
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 3 cut(s) 39, 286, 322
SmaI CCCGGG 2 cut(s) 27, 206
SrfI GCCCGGGC 1 cut(s) 206
SsiI CCGC 1 cut(s) 42
SspMI CTAG 3 cut(s) 440, 515, 529
StyD4I CCNGG 8 cut(s) 24, 25, 203, 204, 318, 324, 333, 378
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 3 cut(s) 20, 89, 181
TaqI TCGA 1 cut(s) 396
TaqII GACCGA 1 cut(s) 301
TatI WGTACW 1 cut(s) 54
TscAI CASTG 3 cut(s) 216, 460, 465
TspDTI ATGAA 2 cut(s) 222, 462
TspMI CCCGGG 2 cut(s) 25, 204
TspRI CASTG 3 cut(s) 216, 460, 465
VpaK11BI GGWCC 3 cut(s) 39, 286, 322
XmaI CCCGGG 2 cut(s) 25, 204
XspI CTAG 3 cut(s) 440, 515, 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.