Rmu_co8069086.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8069086.1
OG0000633
Physical Location & Seq
Forward (+)
1 .. 575
575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8069086.1_g000001.1.cds

Sequence Viewer

Length: 460 bp
gatttaggagttggatcggtgccccagaccgtatagcattctgtgtgagctacccggagaaagccaccagaaacattggcgcgccggataggggatacgtcatgaatgagccagaaatgacgggagagggtagaagtgtcgcccgggcactaatattctctccgggaacttcgtcagtagaggtgccaagtgttcagggagaaatccatggtctcggatccttggacccgatagtccctgatcaggtgactccggtatcggaattggagtctatgcgagctgaaatcgcagccttcagggagcaatccaggatcgatcgggaacaacagagtatcgataaggaaacaaaccgcctcacgcaacagagaatgcaggattgggaagatgaaaacacggcgctggcccgagcactggacaggaggcaccagcacaacgaggcactcactcaggccctggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.0

Weight (kDa)

4.99

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 232
AccB1I GGYRCC 3 cut(s) 19, 183, 422
AccII CGCG 1 cut(s) 82
AciI CCGC 1 cut(s) 351
AclWI GGATC 4 cut(s) 22, 212, 225, 319
AcuI CTGAAG 1 cut(s) 279
AfiI CCNNNNNNNGG 3 cut(s) 91, 243, 411
AjnI CCWGG 2 cut(s) 307, 452
AjuI GAANNNNNNNTTGG 2 cut(s) 360, 392
AluBI AGCT 2 cut(s) 50, 280
AluI AGCT 2 cut(s) 50, 280
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 4 cut(s) 22, 212, 225, 319
AlwNI CAGNNNCTG 1 cut(s) 453
Ama87I CYCGRG 2 cut(s) 143, 404
AoxI GGCC 2 cut(s) 401, 449
ApeKI GCWGC 1 cut(s) 289
AscI GGCGCGCC 1 cut(s) 80
AspLEI GCGC 3 cut(s) 82, 84, 399
AspS9I GGNCC 3 cut(s) 225, 402, 450
AsuC2I CCSGG 4 cut(s) 55, 144, 145, 164
AsuHPI GGTGA 1 cut(s) 258
AvaI CYCGRG 2 cut(s) 143, 404
AvaII GGWCC 1 cut(s) 225
BaeGI GKGCMC 2 cut(s) 24, 150
BaeI ACNNNNGTAYC 2 cut(s) 239, 272
BamHI GGATCC 1 cut(s) 217
BanI GGYRCC 3 cut(s) 19, 183, 422
Bbv12I GWGCWC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 301
BceAI ACGGC 1 cut(s) 410
BciT130I CCWGG 2 cut(s) 309, 454
BciVI GTATCC 1 cut(s) 88
BclI TGATCA 1 cut(s) 240
BcnI CCSGG 4 cut(s) 55, 144, 145, 164
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 458
BfoI RGCGCY 1 cut(s) 400
BfuI GTATCC 1 cut(s) 88
BisI GCNGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 291
Bme1390I CCNGG 6 cut(s) 55, 144, 145, 164, 309, 454
Bme18I GGWCC 1 cut(s) 225
BmeT110I CYCGRG 2 cut(s) 143, 404
BmgT120I GGNCC 3 cut(s) 225, 402, 450
BmiI GGNNCC 5 cut(s) 21, 185, 219, 227, 424
BmrFI CCNGG 6 cut(s) 55, 144, 145, 164, 309, 454
BpuMI CCSGG 4 cut(s) 55, 144, 145, 164
Bsa29I ATCGAT 2 cut(s) 314, 335
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 4 cut(s) 143, 207, 221, 452
BsaWI WCCGGW 1 cut(s) 252
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 243, 411
Bse1I ACTGG 1 cut(s) 416
BseBI CCWGG 2 cut(s) 309, 454
BseCI ATCGAT 2 cut(s) 314, 335
BseDI CCNNGG 4 cut(s) 143, 207, 221, 452
BseLI CCNNNNNNNGG 3 cut(s) 91, 243, 411
BseMII CTCAG 1 cut(s) 460
BseNI ACTGG 1 cut(s) 416
BsePI GCGCGC 1 cut(s) 80
BseSI GKGCMC 2 cut(s) 24, 150
BseXI GCAGC 1 cut(s) 301
Bsh1236I CGCG 1 cut(s) 82
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 2 cut(s) 403, 451
BshNI GGYRCC 3 cut(s) 19, 183, 422
BshVI ATCGAT 2 cut(s) 314, 335
BsiEI CGRYCG 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 411
BsiHKCI CYCGRG 2 cut(s) 143, 404
BsiSI CCGG 5 cut(s) 55, 85, 144, 163, 253
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 3 cut(s) 91, 243, 411
BsmAI GTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 220
BsmI GAATGC 2 cut(s) 37, 374
BsnI GGCC 2 cut(s) 403, 451
Bso31I GGTCTC 1 cut(s) 217
BsoBI CYCGRG 2 cut(s) 143, 404
Bsp1286I GDGCHC 3 cut(s) 24, 150, 411
Bsp143I GATC 5 cut(s) 14, 217, 240, 311, 315
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 1 cut(s) 351
BspANI GGCC 2 cut(s) 403, 451
BspCNI CTCAG 1 cut(s) 459
BspDI ATCGAT 2 cut(s) 314, 335
BspFNI CGCG 1 cut(s) 82
BspHI TCATGA 1 cut(s) 101
BspLI GGNNCC 5 cut(s) 21, 185, 219, 227, 424
BspPI GGATC 4 cut(s) 22, 212, 225, 319
BspT107I GGYRCC 3 cut(s) 19, 183, 422
BspTNI GGTCTC 1 cut(s) 217
BsrI ACTGG 1 cut(s) 416
BssECI CCNNGG 4 cut(s) 143, 207, 221, 452
BssHII GCGCGC 1 cut(s) 80
BssMI GATC 5 cut(s) 14, 217, 240, 311, 315
BssT1I CCWWGG 2 cut(s) 207, 221
Bst2UI CCWGG 2 cut(s) 309, 454
Bst4CI ACNGT 1 cut(s) 31
BstC8I GCNNGC 3 cut(s) 82, 278, 401
BstDEI CTNAG 1 cut(s) 446
BstDSI CCRYGG 1 cut(s) 207
BstFNI CGCG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 400
BstHHI GCGC 3 cut(s) 82, 84, 399
BstKTI GATC 5 cut(s) 17, 220, 243, 314, 318
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 5 cut(s) 14, 217, 240, 311, 315
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstNI CCWGG 2 cut(s) 309, 454
BstSCI CCNGG 6 cut(s) 53, 142, 143, 162, 307, 452
BstSLI GKGCMC 2 cut(s) 24, 150
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
Bsu15I ATCGAT 2 cut(s) 314, 335
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 2 cut(s) 403, 451
BsuTUI ATCGAT 2 cut(s) 314, 335
BtgI CCRYGG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 409
Cac8I GCNNGC 3 cut(s) 82, 278, 401
CaiI CAGNNNCTG 1 cut(s) 453
CciI TCATGA 1 cut(s) 101
CfoI GCGC 3 cut(s) 82, 84, 399
Cfr13I GGNCC 3 cut(s) 225, 402, 450
Cfr9I CCCGGG 1 cut(s) 143
ClaI ATCGAT 2 cut(s) 314, 335
CviAII CATG 2 cut(s) 102, 208
CviJI RGCY 8 cut(s) 50, 64, 111, 280, 292, 403, 451, 457
CviKI_1 RGCY 8 cut(s) 50, 64, 111, 280, 292, 403, 451, 457
DdeI CTNAG 1 cut(s) 446
DpnI GATC 5 cut(s) 16, 219, 242, 313, 317
DpnII GATC 5 cut(s) 14, 217, 240, 311, 315
DrdI GACNNNNNNGTC 1 cut(s) 232
DseDI GACNNNNNNGTC 1 cut(s) 232
Eco130I CCWWGG 2 cut(s) 207, 221
Eco31I GGTCTC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 279
Eco88I CYCGRG 2 cut(s) 143, 404
EcoO109I RGGNCCY 1 cut(s) 450
EcoRII CCWGG 2 cut(s) 307, 452
EcoT14I CCWWGG 2 cut(s) 207, 221
ErhI CCWWGG 2 cut(s) 207, 221
FaeI CATG 2 cut(s) 105, 211
FaiI YATR 4 cut(s) 34, 103, 209, 274
FaqI GGGAC 1 cut(s) 220
FatI CATG 2 cut(s) 101, 207
FbaI TGATCA 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 290
FspBI CTAG 1 cut(s) 458
GlaI GCGC 3 cut(s) 81, 83, 398
GluI GCNGC 1 cut(s) 290
HaeII RGCGCY 1 cut(s) 400
HaeIII GGCC 2 cut(s) 403, 451
HapII CCGG 5 cut(s) 55, 85, 144, 163, 253
HhaI GCGC 3 cut(s) 82, 84, 399
Hin1II CATG 2 cut(s) 105, 211
Hin6I GCGC 3 cut(s) 80, 82, 397
HinP1I GCGC 3 cut(s) 80, 82, 397
HinfI GANTC 2 cut(s) 249, 268
HpaII CCGG 5 cut(s) 55, 85, 144, 163, 253
HphI GGTGA 1 cut(s) 258
Hpy188I TCNGA 2 cut(s) 217, 261
Hpy188III TCNNGA 2 cut(s) 102, 319
HpyAV CCTTC 1 cut(s) 303
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 98
HpyCH4V TGCA 1 cut(s) 372
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
HpyF3I CTNAG 1 cut(s) 446
HpySE526I ACGT 1 cut(s) 98
Hsp92II CATG 2 cut(s) 105, 211
HspAI GCGC 3 cut(s) 80, 82, 397
Ksp22I TGATCA 1 cut(s) 240
Kzo9I GATC 5 cut(s) 14, 217, 240, 311, 315
LmnI GCTCC 1 cut(s) 300
Lsp1109I GCAGC 1 cut(s) 301
MaeI CTAG 1 cut(s) 458
MaeII ACGT 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 246
MalI GATC 5 cut(s) 16, 219, 242, 313, 317
MboI GATC 5 cut(s) 14, 217, 240, 311, 315
MboII GAAGA 1 cut(s) 394
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 3 cut(s) 24, 150, 411
MluCI AATT 1 cut(s) 262
MlyI GAGTC 2 cut(s) 243, 277
MnlI CCTC 5 cut(s) 120, 174, 364, 413, 429
MspI CCGG 5 cut(s) 55, 85, 144, 163, 253
MspR9I CCNGG 6 cut(s) 55, 144, 145, 164, 309, 454
Mva1269I GAATGC 2 cut(s) 37, 374
MvaI CCWGG 2 cut(s) 309, 454
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 286
NciI CCSGG 4 cut(s) 55, 144, 145, 164
NcoI CCATGG 1 cut(s) 207
NdeII GATC 5 cut(s) 14, 217, 240, 311, 315
NlaIII CATG 2 cut(s) 105, 211
NlaIV GGNNCC 5 cut(s) 21, 185, 219, 227, 424
NmuCI GTSAC 1 cut(s) 246
PagI TCATGA 1 cut(s) 101
PalAI GGCGCGCC 1 cut(s) 80
PauI GCGCGC 1 cut(s) 80
PctI GAATGC 2 cut(s) 37, 374
PfoI TCCNGGA 2 cut(s) 162, 307
PkrI GCNGC 1 cut(s) 291
Ple19I CGATCG 1 cut(s) 318
PleI GAGTC 2 cut(s) 243, 276
PpsI GAGTC 2 cut(s) 243, 276
Psp6I CCWGG 2 cut(s) 307, 452
PspGI CCWGG 2 cut(s) 307, 452
PspN4I GGNNCC 5 cut(s) 21, 185, 219, 227, 424
PspPI GGNCC 3 cut(s) 225, 402, 450
PstNI CAGNNNCTG 1 cut(s) 453
PsuI RGATCY 1 cut(s) 217
PteI GCGCGC 1 cut(s) 80
PvuI CGATCG 1 cut(s) 318
SatI GCNGC 1 cut(s) 290
Sau3AI GATC 5 cut(s) 14, 217, 240, 311, 315
Sau96I GGNCC 3 cut(s) 225, 402, 450
SchI GAGTC 2 cut(s) 243, 277
ScrFI CCNGG 6 cut(s) 55, 144, 145, 164, 309, 454
SduI GDGCHC 3 cut(s) 24, 150, 411
SetI ASST 5 cut(s) 52, 101, 185, 248, 282
SgsI GGCGCGCC 1 cut(s) 80
SinI GGWCC 1 cut(s) 225
SmaI CCCGGG 1 cut(s) 145
SrfI GCCCGGGC 1 cut(s) 145
Sse9I AATT 1 cut(s) 262
SsiI CCGC 1 cut(s) 351
SspI AATATT 1 cut(s) 155
SspMI CTAG 1 cut(s) 458
StyD4I CCNGG 6 cut(s) 53, 142, 143, 162, 307, 452
StyI CCWWGG 2 cut(s) 207, 221
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 1 cut(s) 101
TaqI TCGA 2 cut(s) 314, 335
TasI AATT 1 cut(s) 262
TscAI CASTG 1 cut(s) 416
TseFI GTSAC 1 cut(s) 246
TseI GCWGC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 246
TspDTI ATGAA 2 cut(s) 118, 401
TspMI CCCGGG 1 cut(s) 143
TspRI CASTG 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 225
XmaI CCCGGG 1 cut(s) 143
XspI CTAG 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.