RLG00000001772

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000633
Physical Location & Seq
Reverse (-)
20510023 .. 20511237
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001772

Sequence Viewer

Length: 717 bp
ATGGCTACCACCAATGCCCCGGATCCCGAGGACCAGAGCAGAGAGATAGCCTGGGCACTCAAATTTGAGACCCCTGCGATTACTAGCAAGGGAAGATCCAGTGTCACTACCAATGCCGAGACAGTATTGGCATTGGCAAAACAAGATCTCCTAGAGGCCCGAGCGAGAGCATGCGGCAGCACTGGCCGCTCAGACACAAGCAAGGGAAATGGAAACCCAGAATCGTATGTTACGGGACACATTGGAAAGACGGATCACAAGCAACGAGGCAATGGAGAGGGCAACATGGAAGACACCTCAGGCGACGATAGCTGGGGTGCGCACGTCGCACACATTCATCTCCCCCTGTCCCACGAATCCATCTGCAAGGGCACAGCACCCGAAGGTGGCTGCACCTCATCGATATCAGCTGCAGTGGCCGGGGCCACCACAACCATTGCATCTGCAAGCGGCACTTCGAACATCATCTATTTGAACACACCACTCCAGAATAACACCCTGAGCGGTGCCCTACTGATGTCGACACCTAGGGAAAACGAGAGTCTCAGGGATTTTGGAATGAGATGGTTGGGGGCCACCTCCTCCTGCCACGACCTAGACAGGAATATGGTAGAGGTAGCATTTCGGGAAGCATTGAGGCCAAGACACTTCTTATTCCAAATCACCAAGCAACCCTCAGAATTCTATGAAGACTTGATCGATTACTCCACAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

25.53

Weight (kDa)

5.47

Isoelectric Point (pI)

45.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 321
AccB1I GGYRCC 1 cut(s) 506
AccBSI CCGCTC 2 cut(s) 189, 504
AccI GTMKAC 1 cut(s) 521
AciI CCGC 4 cut(s) 174, 187, 450, 504
AclWI GGATC 4 cut(s) 17, 30, 90, 261
AcoI YGGCCR 2 cut(s) 184, 417
AcsI RAATTY 2 cut(s) 62, 680
AfiI CCNNNNNNNGG 1 cut(s) 386
AgsI TTSAA 1 cut(s) 475
AjiI CACGTC 1 cut(s) 325
AjnI CCWGG 1 cut(s) 50
AluBI AGCT 2 cut(s) 312, 410
AluI AGCT 2 cut(s) 312, 410
Alw26I GTCTC 3 cut(s) 62, 113, 548
AlwI GGATC 4 cut(s) 17, 30, 90, 261
Ama87I CYCGRG 2 cut(s) 26, 159
AoxI GGCC 6 cut(s) 156, 184, 417, 423, 573, 638
ApeKI GCWGC 3 cut(s) 177, 390, 410
ApoI RAATTY 2 cut(s) 62, 680
AspA2I CCTAGG 1 cut(s) 527
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 4 cut(s) 31, 157, 423, 573
AsuC2I CCSGG 2 cut(s) 20, 421
AsuHPI GGTGA 1 cut(s) 655
AsuII TTCGAA 1 cut(s) 458
AvaI CYCGRG 2 cut(s) 26, 159
AvaII GGWCC 1 cut(s) 31
AvrII CCTAGG 1 cut(s) 527
AxyI CCTNAGG 1 cut(s) 298
BaeGI GKGCMC 3 cut(s) 58, 374, 511
BamHI GGATCC 1 cut(s) 22
BanI GGYRCC 1 cut(s) 506
BbsI GAAGAC 2 cut(s) 297, 696
BbvI GCAGC 3 cut(s) 189, 377, 397
BccI CCATC 2 cut(s) 368, 558
BciT130I CCWGG 1 cut(s) 52
BcnI CCSGG 2 cut(s) 20, 421
BcoDI GTCTC 3 cut(s) 62, 113, 548
BfaI CTAG 4 cut(s) 84, 152, 528, 596
BfmI CTRYAG 1 cut(s) 411
BglII AGATCT 1 cut(s) 145
BisI GCNGC 6 cut(s) 175, 178, 187, 391, 411, 451
BlnI CCTAGG 1 cut(s) 527
BlsI GCNGC 6 cut(s) 176, 179, 188, 392, 412, 452
Bme1390I CCNGG 3 cut(s) 20, 52, 421
Bme18I GGWCC 1 cut(s) 31
BmeT110I CYCGRG 2 cut(s) 26, 159
BmgBI CACGTC 1 cut(s) 325
BmgT120I GGNCC 4 cut(s) 31, 157, 423, 573
BmiI GGNNCC 4 cut(s) 24, 424, 508, 574
BmrFI CCNGG 3 cut(s) 20, 52, 421
BmsI GCATC 1 cut(s) 449
BpiI GAAGAC 2 cut(s) 297, 696
BpmI CTGGAG 1 cut(s) 470
Bpu10I CCTNAGC 1 cut(s) 500
Bpu14I TTCGAA 1 cut(s) 458
BpuMI CCSGG 2 cut(s) 20, 421
Bsa29I ATCGAT 2 cut(s) 401, 699
BsaI GGTCTC 1 cut(s) 62
BsaJI CCNNGG 5 cut(s) 18, 27, 51, 420, 527
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse1I ACTGG 2 cut(s) 99, 187
Bse21I CCTNAGG 1 cut(s) 298
Bse3DI GCAATG 2 cut(s) 277, 435
BseBI CCWGG 1 cut(s) 52
BseCI ATCGAT 2 cut(s) 401, 699
BseDI CCNNGG 5 cut(s) 18, 27, 51, 420, 527
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMI GCAATG 2 cut(s) 277, 435
BseMII CTCAG 5 cut(s) 204, 312, 491, 559, 690
BseNI ACTGG 2 cut(s) 99, 187
BseRI GAGGAG 1 cut(s) 571
BseSI GKGCMC 3 cut(s) 58, 374, 511
BseXI GCAGC 3 cut(s) 189, 377, 397
BseYI CCCAGC 1 cut(s) 312
BsgI GTGCAG 1 cut(s) 376
BshFI GGCC 6 cut(s) 158, 186, 419, 425, 575, 640
BshNI GGYRCC 1 cut(s) 506
BshVI ATCGAT 2 cut(s) 401, 699
BsiHKCI CYCGRG 2 cut(s) 26, 159
BsiSI CCGG 2 cut(s) 20, 420
BslFI GGGAC 2 cut(s) 249, 334
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 3 cut(s) 62, 113, 548
BsmFI GGGAC 2 cut(s) 249, 334
BsnI GGCC 6 cut(s) 158, 186, 419, 425, 575, 640
Bso31I GGTCTC 1 cut(s) 62
BsoBI CYCGRG 2 cut(s) 26, 159
Bsp119I TTCGAA 1 cut(s) 458
Bsp1286I GDGCHC 3 cut(s) 58, 374, 511
Bsp143I GATC 5 cut(s) 22, 95, 145, 253, 696
BspACI CCGC 4 cut(s) 174, 187, 450, 504
BspANI GGCC 6 cut(s) 158, 186, 419, 425, 575, 640
BspCNI CTCAG 5 cut(s) 203, 311, 492, 558, 689
BspDI ATCGAT 2 cut(s) 401, 699
BspLI GGNNCC 4 cut(s) 24, 424, 508, 574
BspMAI CTGCAG 1 cut(s) 415
BspPI GGATC 4 cut(s) 17, 30, 90, 261
BspT104I TTCGAA 1 cut(s) 458
BspT107I GGYRCC 1 cut(s) 506
BspTNI GGTCTC 1 cut(s) 62
BsrBI CCGCTC 2 cut(s) 189, 504
BsrDI GCAATG 2 cut(s) 277, 435
BsrI ACTGG 2 cut(s) 99, 187
BssECI CCNNGG 5 cut(s) 18, 27, 51, 420, 527
BssMI GATC 5 cut(s) 22, 95, 145, 253, 696
BssT1I CCWWGG 1 cut(s) 527
Bst2UI CCWGG 1 cut(s) 52
Bst4CI ACNGT 2 cut(s) 124, 712
BstBI TTCGAA 1 cut(s) 458
BstC8I GCNNGC 2 cut(s) 172, 448
BstDEI CTNAG 5 cut(s) 190, 298, 500, 545, 676
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 5 cut(s) 25, 98, 148, 256, 699
BstMAI GTCTC 3 cut(s) 62, 113, 548
BstMBI GATC 5 cut(s) 22, 95, 145, 253, 696
BstMWI GCNNNNNNNGC 5 cut(s) 183, 186, 309, 326, 416
BstNI CCWGG 1 cut(s) 52
BstNSI RCATGY 1 cut(s) 174
BstSCI CCNGG 3 cut(s) 18, 50, 419
BstSFI CTRYAG 1 cut(s) 411
BstSLI GKGCMC 3 cut(s) 58, 374, 511
BstV1I GCAGC 3 cut(s) 189, 377, 397
BstV2I GAAGAC 2 cut(s) 297, 696
BstX2I RGATCY 3 cut(s) 22, 95, 145
BstYI RGATCY 3 cut(s) 22, 95, 145
Bsu15I ATCGAT 2 cut(s) 401, 699
Bsu36I CCTNAGG 1 cut(s) 298
BsuRI GGCC 6 cut(s) 158, 186, 419, 425, 575, 640
BsuTUI ATCGAT 2 cut(s) 401, 699
BtrI CACGTC 1 cut(s) 325
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 3 cut(s) 106, 180, 420
Cac8I GCNNGC 2 cut(s) 172, 448
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 4 cut(s) 31, 157, 423, 573
ClaI ATCGAT 2 cut(s) 401, 699
CspCI CAANNNNNGTGG 2 cut(s) 418, 453
CviAII CATG 2 cut(s) 171, 286
DdeI CTNAG 5 cut(s) 190, 298, 500, 545, 676
DpnI GATC 5 cut(s) 24, 97, 147, 255, 698
DpnII GATC 5 cut(s) 22, 95, 145, 253, 696
EaeI YGGCCR 2 cut(s) 184, 417
Eco130I CCWWGG 1 cut(s) 527
Eco31I GGTCTC 1 cut(s) 62
Eco32I GATATC 1 cut(s) 405
Eco47I GGWCC 1 cut(s) 31
Eco81I CCTNAGG 1 cut(s) 298
Eco88I CYCGRG 2 cut(s) 26, 159
EcoRI GAATTC 1 cut(s) 680
EcoRII CCWGG 1 cut(s) 50
EcoRV GATATC 1 cut(s) 405
EcoT14I CCWWGG 1 cut(s) 527
ErhI CCWWGG 1 cut(s) 527
FaeI CATG 2 cut(s) 174, 289
FaiI YATR 6 cut(s) 172, 228, 287, 608, 687, 715
FalI AAGNNNNNCTT 2 cut(s) 439, 471
FaqI GGGAC 2 cut(s) 249, 334
FatI CATG 2 cut(s) 170, 285
FblI GTMKAC 1 cut(s) 521
Fnu4HI GCNGC 6 cut(s) 175, 178, 187, 391, 411, 451
Fsp4HI GCNGC 6 cut(s) 175, 178, 187, 391, 411, 451
FspAI RTGCGCAY 1 cut(s) 321
FspBI CTAG 4 cut(s) 84, 152, 528, 596
FspI TGCGCA 1 cut(s) 321
GlaI GCGC 1 cut(s) 321
GluI GCNGC 6 cut(s) 175, 178, 187, 391, 411, 451
GsaI CCCAGC 1 cut(s) 316
GsuI CTGGAG 1 cut(s) 470
HaeIII GGCC 6 cut(s) 158, 186, 419, 425, 575, 640
HapII CCGG 2 cut(s) 20, 420
HhaI GCGC 1 cut(s) 322
Hin1II CATG 2 cut(s) 174, 289
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HinfI GANTC 3 cut(s) 221, 356, 541
HpaII CCGG 2 cut(s) 20, 420
HphI GGTGA 1 cut(s) 655
Hpy166II GTNNAC 1 cut(s) 522
Hpy188I TCNGA 2 cut(s) 193, 679
Hpy188III TCNNGA 3 cut(s) 26, 487, 626
Hpy8I GTNNAC 1 cut(s) 522
Hpy99I CGWCG 2 cut(s) 308, 329
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 2 cut(s) 124, 712
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 5 cut(s) 366, 393, 413, 440, 446
HpyF10VI GCNNNNNNNGC 5 cut(s) 183, 186, 309, 326, 416
HpyF3I CTNAG 5 cut(s) 190, 298, 500, 545, 676
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 2 cut(s) 174, 289
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 5 cut(s) 22, 95, 145, 253, 696
Lsp1109I GCAGC 3 cut(s) 189, 377, 397
LweI GCATC 1 cut(s) 449
MaeI CTAG 4 cut(s) 84, 152, 528, 596
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 2 cut(s) 103, 229
MalI GATC 5 cut(s) 24, 97, 147, 255, 698
MbiI CCGCTC 2 cut(s) 189, 504
MboI GATC 5 cut(s) 22, 95, 145, 253, 696
MboII GAAGA 3 cut(s) 105, 302, 701
MflI RGATCY 3 cut(s) 22, 95, 145
MhlI GDGCHC 3 cut(s) 58, 374, 511
MluCI AATT 2 cut(s) 62, 680
MlyI GAGTC 1 cut(s) 550
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 2 cut(s) 20, 420
MspR9I CCNGG 3 cut(s) 20, 52, 421
MvaI CCWGG 1 cut(s) 52
MwoI GCNNNNNNNGC 5 cut(s) 183, 186, 309, 326, 416
NciI CCSGG 2 cut(s) 20, 421
NdeII GATC 5 cut(s) 22, 95, 145, 253, 696
NlaIII CATG 2 cut(s) 174, 289
NlaIV GGNNCC 4 cut(s) 24, 424, 508, 574
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 103
NsbI TGCGCA 1 cut(s) 321
NspI RCATGY 1 cut(s) 174
NspV TTCGAA 1 cut(s) 458
PaeI GCATGC 1 cut(s) 174
PfeI GAWTC 2 cut(s) 221, 356
PkrI GCNGC 6 cut(s) 176, 179, 188, 392, 412, 452
PleI GAGTC 1 cut(s) 549
PpsI GAGTC 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 50
PspFI CCCAGC 1 cut(s) 312
PspGI CCWGG 1 cut(s) 50
PspN4I GGNNCC 4 cut(s) 24, 424, 508, 574
PspPI GGNCC 4 cut(s) 31, 157, 423, 573
PstI CTGCAG 1 cut(s) 415
PsuI RGATCY 3 cut(s) 22, 95, 145
PvuII CAGCTG 1 cut(s) 410
SalI GTCGAC 1 cut(s) 520
SatI GCNGC 6 cut(s) 175, 178, 187, 391, 411, 451
Sau3AI GATC 5 cut(s) 22, 95, 145, 253, 696
Sau96I GGNCC 4 cut(s) 31, 157, 423, 573
SchI GAGTC 1 cut(s) 550
ScrFI CCNGG 3 cut(s) 20, 52, 421
SduI GDGCHC 3 cut(s) 58, 374, 511
SfaNI GCATC 1 cut(s) 449
SfcI CTRYAG 1 cut(s) 411
SfuI TTCGAA 1 cut(s) 458
SinI GGWCC 1 cut(s) 31
SphI GCATGC 1 cut(s) 174
Sse9I AATT 2 cut(s) 62, 680
SsiI CCGC 4 cut(s) 174, 187, 450, 504
SspMI CTAG 4 cut(s) 84, 152, 528, 596
StyD4I CCNGG 3 cut(s) 18, 50, 419
StyI CCWWGG 1 cut(s) 527
TaaI ACNGT 2 cut(s) 124, 712
TaiI ACGT 1 cut(s) 327
TaqI TCGA 4 cut(s) 401, 458, 521, 699
TasI AATT 2 cut(s) 62, 680
TauI GCSGC 3 cut(s) 177, 189, 453
TfiI GAWTC 2 cut(s) 221, 356
TscAI CASTG 3 cut(s) 106, 187, 420
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 3 cut(s) 177, 390, 410
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 2 cut(s) 326, 702
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 3 cut(s) 106, 187, 420
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 2 cut(s) 62, 680
XceI RCATGY 1 cut(s) 174
XmaJI CCTAGG 1 cut(s) 527
XmiI GTMKAC 1 cut(s) 521
XspI CTAG 4 cut(s) 84, 152, 528, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.