Rmu_co8203420.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8203420.1
OG0000633
Physical Location & Seq
Forward (+)
1 .. 636
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8203420.1_g000001.1.cds

Sequence Viewer

Length: 490 bp
aaagccaccagaaacattggcgcgccagataggggttcaagacatgaatgagccagaagtgacaggagagggtagaagtgtcgcccgggcactgatattctctcagggaacttcgtcagcagaggcgccaagtgtgcagggagaaatccatggtctcggatccttggacccgatagtcccggatcaggtgactccgatatcggaattggagtctatgcgagctgagatcgcagccttcagggaacaatacaggatcgatcgggaacaacagagtaccgatagggaaacaaaccgcctcacgcaacagagaatgcaggatttgcgtgaacgctgccccgataacaggaaacaccagcaccgccccagcacctcctacggagggcagtcaacggataatccagataccggtagacttattcccggaaagcttgagacatctgccaccaccaccgttaccacagccagttcacaatatcccaccggtaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.85

Weight (kDa)

5.25

Isoelectric Point (pI)

34.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 174
AccB1I GGYRCC 1 cut(s) 125
AccI GTMKAC 1 cut(s) 410
AccII CGCG 1 cut(s) 23
AciI CCGC 2 cut(s) 293, 359
AclWI GGATC 4 cut(s) 154, 167, 190, 261
AcuI CTGAAG 1 cut(s) 221
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 5 cut(s) 32, 185, 343, 379, 405
AgeI ACCGGT 2 cut(s) 405, 480
AgsI TTSAA 1 cut(s) 39
AluBI AGCT 2 cut(s) 222, 428
AluI AGCT 2 cut(s) 222, 428
Alw26I GTCTC 2 cut(s) 159, 426
AlwI GGATC 4 cut(s) 154, 167, 190, 261
Ama87I CYCGRG 1 cut(s) 85
ApeKI GCWGC 2 cut(s) 231, 331
AscI GGCGCGCC 1 cut(s) 21
AsiGI ACCGGT 2 cut(s) 405, 480
AspLEI GCGC 3 cut(s) 23, 25, 128
AspS9I GGNCC 1 cut(s) 167
AsuC2I CCSGG 4 cut(s) 86, 87, 180, 421
AsuHPI GGTGA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 85
AvaII GGWCC 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 92
BamHI GGATCC 1 cut(s) 159
BanI GGYRCC 1 cut(s) 125
BbvI GCAGC 2 cut(s) 243, 318
BcnI CCSGG 4 cut(s) 86, 87, 180, 421
BcoDI GTCTC 2 cut(s) 159, 426
BfoI RGCGCY 1 cut(s) 129
BisI GCNGC 2 cut(s) 232, 332
BlsI GCNGC 2 cut(s) 233, 333
Bme1390I CCNGG 4 cut(s) 86, 87, 180, 421
Bme18I GGWCC 1 cut(s) 167
BmeT110I CYCGRG 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 3 cut(s) 127, 161, 169
BmrFI CCNGG 4 cut(s) 86, 87, 180, 421
BpuEI CTTGAG 1 cut(s) 450
BpuMI CCSGG 4 cut(s) 86, 87, 180, 421
Bsa29I ATCGAT 1 cut(s) 256
BsaHI GRCGYC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 3 cut(s) 85, 149, 163
BsaWI WCCGGW 2 cut(s) 405, 480
Bsc4I CCNNNNNNNGG 5 cut(s) 32, 185, 343, 379, 405
Bse118I RCCGGY 2 cut(s) 405, 480
Bse1I ACTGG 1 cut(s) 463
BseCI ATCGAT 1 cut(s) 256
BseDI CCNNGG 3 cut(s) 85, 149, 163
BseLI CCNNNNNNNGG 5 cut(s) 32, 185, 343, 379, 405
BseMII CTCAG 2 cut(s) 117, 214
BseNI ACTGG 1 cut(s) 463
BsePI GCGCGC 1 cut(s) 21
BseSI GKGCMC 1 cut(s) 92
BseXI GCAGC 2 cut(s) 243, 318
BseYI CCCAGC 1 cut(s) 363
BsgI GTGCAG 1 cut(s) 156
Bsh1236I CGCG 1 cut(s) 23
Bsh1285I CGRYCG 1 cut(s) 260
BshNI GGYRCC 1 cut(s) 125
BshTI ACCGGT 2 cut(s) 405, 480
BshVI ATCGAT 1 cut(s) 256
BsiEI CGRYCG 1 cut(s) 260
BsiHKCI CYCGRG 1 cut(s) 85
BsiSI CCGG 5 cut(s) 86, 180, 406, 421, 481
BslFI GGGAC 1 cut(s) 162
BslI CCNNNNNNNGG 5 cut(s) 32, 185, 343, 379, 405
BsmAI GTCTC 2 cut(s) 159, 426
BsmFI GGGAC 1 cut(s) 162
BsmI GAATGC 1 cut(s) 316
Bso31I GGTCTC 1 cut(s) 159
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 5 cut(s) 159, 182, 226, 253, 257
Bsp19I CCATGG 1 cut(s) 149
BspACI CCGC 2 cut(s) 293, 359
BspCNI CTCAG 2 cut(s) 116, 215
BspDI ATCGAT 1 cut(s) 256
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 3 cut(s) 127, 161, 169
BspPI GGATC 4 cut(s) 154, 167, 190, 261
BspT107I GGYRCC 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 159
BsrFI RCCGGY 2 cut(s) 405, 480
BsrI ACTGG 1 cut(s) 463
BssAI RCCGGY 2 cut(s) 405, 480
BssECI CCNNGG 3 cut(s) 85, 149, 163
BssHII GCGCGC 1 cut(s) 21
BssMI GATC 5 cut(s) 159, 182, 226, 253, 257
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 2 cut(s) 149, 163
Bst4CI ACNGT 1 cut(s) 452
BstACI GRCGYC 1 cut(s) 126
BstAPI GCANNNNNTGC 1 cut(s) 320
BstC8I GCNNGC 2 cut(s) 23, 220
BstDEI CTNAG 2 cut(s) 103, 223
BstDSI CCRYGG 1 cut(s) 149
BstFNI CGCG 1 cut(s) 23
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 3 cut(s) 23, 25, 128
BstKTI GATC 5 cut(s) 162, 185, 229, 256, 260
BstMAI GTCTC 2 cut(s) 159, 426
BstMBI GATC 5 cut(s) 159, 182, 226, 253, 257
BstMCI CGRYCG 1 cut(s) 260
BstMWI GCNNNNNNNGC 3 cut(s) 134, 228, 320
BstSCI CCNGG 4 cut(s) 84, 85, 178, 419
BstSLI GKGCMC 1 cut(s) 92
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 2 cut(s) 243, 318
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
Bsu15I ATCGAT 1 cut(s) 256
BsuTUI ATCGAT 1 cut(s) 256
BtgI CCRYGG 1 cut(s) 149
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 2 cut(s) 23, 220
CfoI GCGC 3 cut(s) 23, 25, 128
Cfr10I RCCGGY 2 cut(s) 405, 480
Cfr13I GGNCC 1 cut(s) 167
Cfr9I CCCGGG 1 cut(s) 85
ClaI ATCGAT 1 cut(s) 256
Csp6I GTAC 1 cut(s) 274
CspAI ACCGGT 2 cut(s) 405, 480
CviAII CATG 2 cut(s) 44, 150
CviJI RGCY 6 cut(s) 5, 53, 222, 234, 428, 462
CviKI_1 RGCY 6 cut(s) 5, 53, 222, 234, 428, 462
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 2 cut(s) 103, 223
DinI GGCGCC 1 cut(s) 127
DpnI GATC 5 cut(s) 161, 184, 228, 255, 259
DpnII GATC 5 cut(s) 159, 182, 226, 253, 257
DrdI GACNNNNNNGTC 1 cut(s) 174
DseDI GACNNNNNNGTC 1 cut(s) 174
Eco130I CCWWGG 2 cut(s) 149, 163
Eco31I GGTCTC 1 cut(s) 159
Eco32I GATATC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 221
Eco88I CYCGRG 1 cut(s) 85
EcoRV GATATC 1 cut(s) 199
EcoT14I CCWWGG 2 cut(s) 149, 163
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
ErhI CCWWGG 2 cut(s) 149, 163
FaeI CATG 2 cut(s) 47, 153
FaiI YATR 3 cut(s) 45, 151, 216
FaqI GGGAC 1 cut(s) 162
FatI CATG 2 cut(s) 43, 149
FblI GTMKAC 1 cut(s) 410
Fnu4HI GCNGC 2 cut(s) 232, 332
Fsp4HI GCNGC 2 cut(s) 232, 332
GlaI GCGC 3 cut(s) 22, 24, 127
GluI GCNGC 2 cut(s) 232, 332
GsaI CCCAGC 1 cut(s) 367
HaeII RGCGCY 1 cut(s) 129
HapII CCGG 5 cut(s) 86, 180, 406, 421, 481
HhaI GCGC 3 cut(s) 23, 25, 128
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 2 cut(s) 47, 153
Hin6I GCGC 3 cut(s) 21, 23, 126
HinP1I GCGC 3 cut(s) 21, 23, 126
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HindIII AAGCTT 1 cut(s) 426
HinfI GANTC 2 cut(s) 191, 210
HpaII CCGG 5 cut(s) 86, 180, 406, 421, 481
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 4 cut(s) 327, 388, 411, 468
Hpy188I TCNGA 3 cut(s) 159, 196, 203
Hpy188III TCNNGA 3 cut(s) 39, 261, 399
Hpy8I GTNNAC 4 cut(s) 327, 388, 411, 468
HpyAV CCTTC 1 cut(s) 245
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4V TGCA 2 cut(s) 137, 314
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 228, 320
HpyF3I CTNAG 2 cut(s) 103, 223
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 2 cut(s) 47, 153
HspAI GCGC 3 cut(s) 21, 23, 126
KasI GGCGCC 1 cut(s) 125
Kzo9I GATC 5 cut(s) 159, 182, 226, 253, 257
Lsp1109I GCAGC 2 cut(s) 243, 318
MaeIII GTNAC 4 cut(s) 59, 188, 452, 483
MalI GATC 5 cut(s) 161, 184, 228, 255, 259
MboI GATC 5 cut(s) 159, 182, 226, 253, 257
MflI RGATCY 1 cut(s) 159
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 1 cut(s) 204
Mly113I GGCGCC 1 cut(s) 126
MlyI GAGTC 2 cut(s) 185, 219
MnlI CCTC 5 cut(s) 62, 116, 306, 372, 380
MspI CCGG 5 cut(s) 86, 180, 406, 421, 481
MspR9I CCNGG 4 cut(s) 86, 87, 180, 421
Mva1269I GAATGC 1 cut(s) 316
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 3 cut(s) 134, 228, 320
NarI GGCGCC 1 cut(s) 126
NciI CCSGG 4 cut(s) 86, 87, 180, 421
NcoI CCATGG 1 cut(s) 149
NdeII GATC 5 cut(s) 159, 182, 226, 253, 257
NlaIII CATG 2 cut(s) 47, 153
NlaIV GGNNCC 3 cut(s) 127, 161, 169
NmuCI GTSAC 2 cut(s) 59, 188
PalAI GGCGCGCC 1 cut(s) 21
PauI GCGCGC 1 cut(s) 21
PctI GAATGC 1 cut(s) 316
PfoI TCCNGGA 2 cut(s) 178, 419
PinAI ACCGGT 2 cut(s) 405, 480
PkrI GCNGC 2 cut(s) 233, 333
Ple19I CGATCG 1 cut(s) 260
PleI GAGTC 2 cut(s) 185, 218
PluTI GGCGCC 1 cut(s) 129
PpsI GAGTC 2 cut(s) 185, 218
PspFI CCCAGC 1 cut(s) 363
PspN4I GGNNCC 3 cut(s) 127, 161, 169
PspPI GGNCC 1 cut(s) 167
PsuI RGATCY 1 cut(s) 159
PteI GCGCGC 1 cut(s) 21
PvuI CGATCG 1 cut(s) 260
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
SatI GCNGC 2 cut(s) 232, 332
Sau3AI GATC 5 cut(s) 159, 182, 226, 253, 257
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 2 cut(s) 185, 219
ScrFI CCNGG 4 cut(s) 86, 87, 180, 421
SduI GDGCHC 1 cut(s) 92
SetI ASST 4 cut(s) 190, 224, 372, 430
SfoI GGCGCC 1 cut(s) 127
SgsI GGCGCGCC 1 cut(s) 21
SinI GGWCC 1 cut(s) 167
SmaI CCCGGG 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
SrfI GCCCGGGC 1 cut(s) 87
Sse9I AATT 1 cut(s) 204
SsiI CCGC 2 cut(s) 293, 359
SspDI GGCGCC 1 cut(s) 125
StyD4I CCNGG 4 cut(s) 84, 85, 178, 419
StyI CCWWGG 2 cut(s) 149, 163
TaaI ACNGT 1 cut(s) 452
TaqI TCGA 1 cut(s) 256
TasI AATT 1 cut(s) 204
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 2 cut(s) 59, 188
TseI GCWGC 2 cut(s) 231, 331
Tsp45I GTSAC 2 cut(s) 59, 188
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 2 cut(s) 391, 405
TspMI CCCGGG 1 cut(s) 85
TspRI CASTG 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 167
XmaI CCCGGG 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.