Rmu_sc0002264.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002264.1
OG0000633
Physical Location & Seq
Forward (+)
55386 .. 55754
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002264.1_g000016.1.cds

Sequence Viewer

Length: 369 bp
atgaatgagccagaagtggcaggagagggtcgaagtgtcgcccgggcactgatcttctctccgggaactttgtcagcagaagcgccaagtgctcagagagaaatgcatggtctcggatccttggacccgatggtccctgatcaagtgactccggtatcggagttggagtctatgcgagctgagatcgcagccttgagcgaacaatccaggatcgatcgggaacaacaaggtaccgagagggaaacataccgccttacgcaacagagaatgcaggatttggaagatgaaaacacagcgctggcccgagcactggacaggaggcaccagcacaacgaggaactcacccaggccctggctagagcatcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.57

Weight (kDa)

4.77

Isoelectric Point (pI)

53.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
Acc65I GGTACC 1 cut(s) 230
AccB1I GGYRCC 2 cut(s) 230, 321
AccB7I CCANNNNNTGG 1 cut(s) 352
AciI CCGC 1 cut(s) 250
AclWI GGATC 3 cut(s) 111, 124, 218
AfaI GTAC 1 cut(s) 232
AfeI AGCGCT 1 cut(s) 297
AfiI CCNNNNNNNGG 2 cut(s) 310, 352
AjnI CCWGG 3 cut(s) 206, 345, 351
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw21I GWGCWC 2 cut(s) 94, 310
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 3 cut(s) 111, 124, 218
AlwNI CAGNNNCTG 1 cut(s) 352
Ama87I CYCGRG 2 cut(s) 42, 303
Aor51HI AGCGCT 1 cut(s) 297
AoxI GGCC 2 cut(s) 300, 348
ApeKI GCWGC 1 cut(s) 188
Asp718I GGTACC 1 cut(s) 230
AspLEI GCGC 2 cut(s) 85, 298
AspS9I GGNCC 4 cut(s) 124, 133, 301, 349
AsuC2I CCSGG 3 cut(s) 43, 44, 63
AsuHPI GGTGA 1 cut(s) 334
AvaI CYCGRG 2 cut(s) 42, 303
AvaII GGWCC 2 cut(s) 124, 133
BaeGI GKGCMC 1 cut(s) 49
BaeI ACNNNNGTAYC 2 cut(s) 138, 171
BamHI GGATCC 1 cut(s) 116
BanI GGYRCC 2 cut(s) 230, 321
Bbv12I GWGCWC 2 cut(s) 94, 310
BbvI GCAGC 1 cut(s) 200
BccI CCATC 1 cut(s) 124
BciT130I CCWGG 3 cut(s) 208, 347, 353
BclI TGATCA 1 cut(s) 139
BcnI CCSGG 3 cut(s) 43, 44, 63
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 2 cut(s) 357, 367
BfoI RGCGCY 2 cut(s) 86, 299
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 6 cut(s) 43, 44, 63, 208, 347, 353
Bme18I GGWCC 2 cut(s) 124, 133
BmeT110I CYCGRG 2 cut(s) 42, 303
BmgT120I GGNCC 4 cut(s) 124, 133, 301, 349
BmiI GGNNCC 5 cut(s) 118, 126, 135, 232, 323
BmrFI CCNGG 6 cut(s) 43, 44, 63, 208, 347, 353
BpuEI CTTGAG 1 cut(s) 214
BpuMI CCSGG 3 cut(s) 43, 44, 63
Bsa29I ATCGAT 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 4 cut(s) 42, 120, 345, 351
BsaWI WCCGGW 1 cut(s) 151
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 352
Bse1I ACTGG 1 cut(s) 315
BseBI CCWGG 3 cut(s) 208, 347, 353
BseCI ATCGAT 1 cut(s) 213
BseDI CCNNGG 4 cut(s) 42, 120, 345, 351
BseGI GGATG 1 cut(s) 362
BseLI CCNNNNNNNGG 2 cut(s) 310, 352
BseMII CTCAG 2 cut(s) 107, 171
BseNI ACTGG 1 cut(s) 315
BseSI GKGCMC 1 cut(s) 49
BseXI GCAGC 1 cut(s) 200
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 2 cut(s) 302, 350
BshNI GGYRCC 2 cut(s) 230, 321
BshVI ATCGAT 1 cut(s) 213
BsiEI CGRYCG 1 cut(s) 217
BsiHKAI GWGCWC 2 cut(s) 94, 310
BsiHKCI CYCGRG 2 cut(s) 42, 303
BsiSI CCGG 3 cut(s) 43, 62, 152
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 310, 352
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 273
BsnI GGCC 2 cut(s) 302, 350
Bso31I GGTCTC 1 cut(s) 116
BsoBI CYCGRG 2 cut(s) 42, 303
Bsp1286I GDGCHC 3 cut(s) 49, 94, 310
Bsp143I GATC 6 cut(s) 51, 116, 139, 183, 210, 214
BspACI CCGC 1 cut(s) 250
BspANI GGCC 2 cut(s) 302, 350
BspCNI CTCAG 2 cut(s) 106, 172
BspDI ATCGAT 1 cut(s) 213
BspLI GGNNCC 5 cut(s) 118, 126, 135, 232, 323
BspPI GGATC 3 cut(s) 111, 124, 218
BspT107I GGYRCC 2 cut(s) 230, 321
BspTNI GGTCTC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 315
BssECI CCNNGG 4 cut(s) 42, 120, 345, 351
BssMI GATC 6 cut(s) 51, 116, 139, 183, 210, 214
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 3 cut(s) 208, 347, 353
BstC8I GCNNGC 2 cut(s) 177, 300
BstDEI CTNAG 2 cut(s) 93, 180
BstF5I GGATG 1 cut(s) 362
BstH2I RGCGCY 2 cut(s) 86, 299
BstHHI GCGC 2 cut(s) 85, 298
BstKTI GATC 6 cut(s) 54, 119, 142, 186, 213, 217
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 6 cut(s) 51, 116, 139, 183, 210, 214
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 2 cut(s) 89, 185
BstNI CCWGG 3 cut(s) 208, 347, 353
BstSCI CCNGG 6 cut(s) 41, 42, 61, 206, 345, 351
BstSLI GKGCMC 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
Bsu15I ATCGAT 1 cut(s) 213
BsuRI GGCC 2 cut(s) 302, 350
BsuTUI ATCGAT 1 cut(s) 213
BtsCI GGATG 1 cut(s) 362
BtsIMutI CAGTG 2 cut(s) 47, 308
Cac8I GCNNGC 2 cut(s) 177, 300
CaiI CAGNNNCTG 1 cut(s) 352
CfoI GCGC 2 cut(s) 85, 298
Cfr13I GGNCC 4 cut(s) 124, 133, 301, 349
Cfr9I CCCGGG 1 cut(s) 42
ClaI ATCGAT 1 cut(s) 213
Csp6I GTAC 1 cut(s) 231
CviAII CATG 1 cut(s) 107
CviJI RGCY 6 cut(s) 10, 179, 191, 302, 350, 356
CviKI_1 RGCY 6 cut(s) 10, 179, 191, 302, 350, 356
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 2 cut(s) 93, 180
DpnI GATC 6 cut(s) 53, 118, 141, 185, 212, 216
DpnII GATC 6 cut(s) 51, 116, 139, 183, 210, 214
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 116
Eco47I GGWCC 2 cut(s) 124, 133
Eco47III AGCGCT 1 cut(s) 297
Eco88I CYCGRG 2 cut(s) 42, 303
EcoO109I RGGNCCY 1 cut(s) 349
EcoRII CCWGG 3 cut(s) 206, 345, 351
EcoT14I CCWWGG 1 cut(s) 120
EcoT22I ATGCAT 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 1 cut(s) 110
FaiI YATR 3 cut(s) 108, 173, 247
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 106
FbaI TGATCA 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 1 cut(s) 349
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 2 cut(s) 357, 367
GlaI GCGC 2 cut(s) 84, 297
GluI GCNGC 1 cut(s) 189
HaeII RGCGCY 2 cut(s) 86, 299
HaeIII GGCC 2 cut(s) 302, 350
HapII CCGG 3 cut(s) 43, 62, 152
HhaI GCGC 2 cut(s) 85, 298
Hin1II CATG 1 cut(s) 110
Hin6I GCGC 2 cut(s) 83, 296
HinP1I GCGC 2 cut(s) 83, 296
HinfI GANTC 2 cut(s) 148, 167
HpaII CCGG 3 cut(s) 43, 62, 152
HphI GGTGA 1 cut(s) 334
Hpy188I TCNGA 3 cut(s) 96, 116, 160
Hpy188III TCNNGA 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 106, 271
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 185
HpyF3I CTNAG 2 cut(s) 93, 180
Hsp92II CATG 1 cut(s) 110
HspAI GCGC 2 cut(s) 83, 296
KpnI GGTACC 1 cut(s) 234
Ksp22I TGATCA 1 cut(s) 139
Kzo9I GATC 6 cut(s) 51, 116, 139, 183, 210, 214
Lsp1109I GCAGC 1 cut(s) 200
MaeI CTAG 2 cut(s) 357, 367
MaeIII GTNAC 1 cut(s) 145
MalI GATC 6 cut(s) 53, 118, 141, 185, 212, 216
MboI GATC 6 cut(s) 51, 116, 139, 183, 210, 214
MboII GAAGA 2 cut(s) 46, 293
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 3 cut(s) 49, 94, 310
MlyI GAGTC 2 cut(s) 142, 176
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 4 cut(s) 19, 231, 312, 328
Mph1103I ATGCAT 1 cut(s) 108
MspI CCGG 3 cut(s) 43, 62, 152
MspR9I CCNGG 6 cut(s) 43, 44, 63, 208, 347, 353
Mva1269I GAATGC 1 cut(s) 273
MvaI CCWGG 3 cut(s) 208, 347, 353
MwoI GCNNNNNNNGC 2 cut(s) 89, 185
NciI CCSGG 3 cut(s) 43, 44, 63
NdeII GATC 6 cut(s) 51, 116, 139, 183, 210, 214
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 5 cut(s) 118, 126, 135, 232, 323
NmuCI GTSAC 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 108
PctI GAATGC 1 cut(s) 273
PflMI CCANNNNNTGG 1 cut(s) 352
PfoI TCCNGGA 2 cut(s) 61, 206
PkrI GCNGC 1 cut(s) 190
Ple19I CGATCG 1 cut(s) 217
PleI GAGTC 2 cut(s) 142, 175
PpsI GAGTC 2 cut(s) 142, 175
Psp6I CCWGG 3 cut(s) 206, 345, 351
PspGI CCWGG 3 cut(s) 206, 345, 351
PspN4I GGNNCC 5 cut(s) 118, 126, 135, 232, 323
PspPI GGNCC 4 cut(s) 124, 133, 301, 349
PstNI CAGNNNCTG 1 cut(s) 352
PsuI RGATCY 1 cut(s) 116
PvuI CGATCG 1 cut(s) 217
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 6 cut(s) 51, 116, 139, 183, 210, 214
Sau96I GGNCC 4 cut(s) 124, 133, 301, 349
SchI GAGTC 2 cut(s) 142, 176
ScrFI CCNGG 6 cut(s) 43, 44, 63, 208, 347, 353
SduI GDGCHC 3 cut(s) 49, 94, 310
SetI ASST 2 cut(s) 181, 232
SinI GGWCC 2 cut(s) 124, 133
SmaI CCCGGG 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
SrfI GCCCGGGC 1 cut(s) 44
SsiI CCGC 1 cut(s) 250
SspMI CTAG 2 cut(s) 357, 367
StyD4I CCNGG 6 cut(s) 41, 42, 61, 206, 345, 351
StyI CCWWGG 1 cut(s) 120
TaqI TCGA 2 cut(s) 31, 213
TscAI CASTG 2 cut(s) 54, 315
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 17, 300
TspMI CCCGGG 1 cut(s) 42
TspRI CASTG 2 cut(s) 54, 315
Van91I CCANNNNNTGG 1 cut(s) 352
VpaK11BI GGWCC 2 cut(s) 124, 133
XmaI CCCGGG 1 cut(s) 42
XspI CTAG 2 cut(s) 357, 367
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.