Rmu_sc0029888.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029888.1
OG0000633
Physical Location & Seq
Reverse (-)
1 .. 590
590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029888.1_g000001.1.cds

Sequence Viewer

Length: 534 bp
atgaatgagccggaagttgcaggagagagaactgtcgcccgggcactcgtattctccccgggaacttcatcagcagaggcgccagctgttcgggaggaaatacatggtctcggatccttggacccaatagtcccggatcaggtgactccggtatcagagttagagtctatgcgagctgagatcgcagccttcaaagagcagtccaggatcgatcgggaacaacgaagtaccgatagggaaacaaaccgcctcgcgcaacagagaatgcaggatttggaagatgaaaatacggtgctggctcgggcactagacaggaggtaccagcacaacgaggcacttactcaggccctggctagagcatcccagctagcagacctgaacgccgccccgataacaggaactaccaacaccgtaccagcacctcccacggagggcagccagaggttaatccaggtgccggtagacttattcccggaaagcttgaggcatctaccaccaccaccattaccacagccagttcacagtatcacgctg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.53

Weight (kDa)

4.93

Isoelectric Point (pI)

55.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
Acc65I GGTACC 1 cut(s) 318
AccB1I GGYRCC 3 cut(s) 79, 318, 454
AccI GTMKAC 1 cut(s) 462
AccII CGCG 1 cut(s) 254
AciI CCGC 2 cut(s) 247, 384
AclWI GGATC 4 cut(s) 108, 121, 144, 215
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 3 cut(s) 229, 320, 414
AfiI CCNNNNNNNGG 4 cut(s) 139, 395, 431, 457
AgsI TTSAA 1 cut(s) 193
AjnI CCWGG 3 cut(s) 203, 348, 450
AluBI AGCT 4 cut(s) 86, 176, 367, 480
AluI AGCT 4 cut(s) 86, 176, 367, 480
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 4 cut(s) 108, 121, 144, 215
AlwNI CAGNNNCTG 1 cut(s) 349
Ama87I CYCGRG 3 cut(s) 39, 58, 300
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 2 cut(s) 185, 435
Asp718I GGTACC 1 cut(s) 318
AspLEI GCGC 2 cut(s) 82, 256
AspS9I GGNCC 2 cut(s) 121, 346
AsuC2I CCSGG 6 cut(s) 40, 41, 59, 60, 134, 473
AsuHPI GGTGA 1 cut(s) 154
AsuNHI GCTAGC 1 cut(s) 367
AvaI CYCGRG 3 cut(s) 39, 58, 300
AvaII GGWCC 1 cut(s) 121
BaeGI GKGCMC 2 cut(s) 46, 307
BaeI ACNNNNGTAYC 2 cut(s) 135, 168
BamHI GGATCC 1 cut(s) 113
BanI GGYRCC 3 cut(s) 79, 318, 454
BbvI GCAGC 2 cut(s) 197, 447
BciT130I CCWGG 3 cut(s) 205, 350, 452
BcnI CCSGG 6 cut(s) 40, 41, 59, 60, 134, 473
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 3 cut(s) 308, 354, 368
BfoI RGCGCY 1 cut(s) 83
BisI GCNGC 3 cut(s) 186, 384, 436
BlsI GCNGC 3 cut(s) 187, 385, 437
Bme1390I CCNGG 9 cut(s) 40, 41, 59, 60, 134, 205, 350, 452, 473
Bme18I GGWCC 1 cut(s) 121
BmeT110I CYCGRG 3 cut(s) 39, 58, 300
BmgT120I GGNCC 2 cut(s) 121, 346
BmiI GGNNCC 5 cut(s) 81, 115, 123, 320, 456
BmrFI CCNGG 9 cut(s) 40, 41, 59, 60, 134, 205, 350, 452, 473
BmsI GCATC 2 cut(s) 368, 496
BmtI GCTAGC 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 502
BpuMI CCSGG 6 cut(s) 40, 41, 59, 60, 134, 473
Bsa29I ATCGAT 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 6 cut(s) 39, 57, 58, 117, 348, 426
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 4 cut(s) 139, 395, 431, 457
Bse118I RCCGGY 1 cut(s) 457
Bse1I ACTGG 1 cut(s) 515
BseBI CCWGG 3 cut(s) 205, 350, 452
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 6 cut(s) 39, 57, 58, 117, 348, 426
BseGI GGATG 1 cut(s) 359
BseLI CCNNNNNNNGG 4 cut(s) 139, 395, 431, 457
BseMII CTCAG 2 cut(s) 168, 356
BseNI ACTGG 1 cut(s) 515
BseSI GKGCMC 2 cut(s) 46, 307
BseXI GCAGC 2 cut(s) 197, 447
BseYI CCCAGC 1 cut(s) 363
Bsh1236I CGCG 1 cut(s) 254
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 1 cut(s) 347
BshNI GGYRCC 3 cut(s) 79, 318, 454
BshVI ATCGAT 1 cut(s) 210
BsiEI CGRYCG 1 cut(s) 214
BsiHKCI CYCGRG 3 cut(s) 39, 58, 300
BsiSI CCGG 7 cut(s) 11, 40, 59, 134, 149, 458, 473
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 4 cut(s) 139, 395, 431, 457
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 270
BsnI GGCC 1 cut(s) 347
Bso31I GGTCTC 1 cut(s) 113
BsoBI CYCGRG 3 cut(s) 39, 58, 300
Bsp1286I GDGCHC 2 cut(s) 46, 307
Bsp143I GATC 5 cut(s) 113, 136, 180, 207, 211
BspACI CCGC 2 cut(s) 247, 384
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 2 cut(s) 169, 355
BspDI ATCGAT 1 cut(s) 210
BspFNI CGCG 1 cut(s) 254
BspLI GGNNCC 5 cut(s) 81, 115, 123, 320, 456
BspOI GCTAGC 1 cut(s) 371
BspPI GGATC 4 cut(s) 108, 121, 144, 215
BspT107I GGYRCC 3 cut(s) 79, 318, 454
BspTNI GGTCTC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 457
BsrI ACTGG 1 cut(s) 515
BssAI RCCGGY 1 cut(s) 457
BssECI CCNNGG 6 cut(s) 39, 57, 58, 117, 348, 426
BssMI GATC 5 cut(s) 113, 136, 180, 207, 211
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 3 cut(s) 205, 350, 452
Bst4CI ACNGT 4 cut(s) 34, 292, 412, 524
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 4 cut(s) 84, 174, 297, 369
BstDEI CTNAG 2 cut(s) 177, 342
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 1 cut(s) 359
BstFNI CGCG 1 cut(s) 254
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 2 cut(s) 82, 256
BstKTI GATC 5 cut(s) 116, 139, 183, 210, 214
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 5 cut(s) 113, 136, 180, 207, 211
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 3 cut(s) 205, 350, 452
BstSCI CCNGG 9 cut(s) 38, 39, 57, 58, 132, 203, 348, 450, 471
BstSLI GKGCMC 2 cut(s) 46, 307
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 2 cut(s) 197, 447
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
Bsu15I ATCGAT 1 cut(s) 210
BsuRI GGCC 1 cut(s) 347
BsuTUI ATCGAT 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 1 cut(s) 359
Cac8I GCNNGC 4 cut(s) 84, 174, 297, 369
CaiI CAGNNNCTG 1 cut(s) 349
CfoI GCGC 2 cut(s) 82, 256
Cfr10I RCCGGY 1 cut(s) 457
Cfr13I GGNCC 2 cut(s) 121, 346
Cfr9I CCCGGG 2 cut(s) 39, 58
ClaI ATCGAT 1 cut(s) 210
Csp6I GTAC 3 cut(s) 228, 319, 413
CviAII CATG 1 cut(s) 104
CviQI GTAC 3 cut(s) 228, 319, 413
DdeI CTNAG 2 cut(s) 177, 342
DinI GGCGCC 1 cut(s) 81
DpnI GATC 5 cut(s) 115, 138, 182, 209, 213
DpnII GATC 5 cut(s) 113, 136, 180, 207, 211
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 121
Eco88I CYCGRG 3 cut(s) 39, 58, 300
EcoO109I RGGNCCY 1 cut(s) 346
EcoRII CCWGG 3 cut(s) 203, 348, 450
EcoT14I CCWWGG 1 cut(s) 117
EgeI GGCGCC 1 cut(s) 81
EheI GGCGCC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 107
FaiI YATR 2 cut(s) 105, 170
FaqI GGGAC 1 cut(s) 116
FatI CATG 1 cut(s) 103
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 3 cut(s) 186, 384, 436
FokI GGATG 1 cut(s) 346
Fsp4HI GCNGC 3 cut(s) 186, 384, 436
FspBI CTAG 3 cut(s) 308, 354, 368
GlaI GCGC 2 cut(s) 81, 255
GluI GCNGC 3 cut(s) 186, 384, 436
GsaI CCCAGC 1 cut(s) 367
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 1 cut(s) 347
HapII CCGG 7 cut(s) 11, 40, 59, 134, 149, 458, 473
HhaI GCGC 2 cut(s) 82, 256
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 1 cut(s) 107
Hin6I GCGC 2 cut(s) 80, 254
HinP1I GCGC 2 cut(s) 80, 254
HindIII AAGCTT 1 cut(s) 478
HinfI GANTC 2 cut(s) 145, 164
HpaII CCGG 7 cut(s) 11, 40, 59, 134, 149, 458, 473
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 2 cut(s) 463, 520
Hpy188I TCNGA 2 cut(s) 113, 157
Hpy188III TCNNGA 2 cut(s) 92, 215
Hpy8I GTNNAC 2 cut(s) 463, 520
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 4 cut(s) 34, 292, 412, 524
HpyCH4V TGCA 2 cut(s) 20, 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 2 cut(s) 177, 342
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 1 cut(s) 107
HspAI GCGC 2 cut(s) 80, 254
KasI GGCGCC 1 cut(s) 79
KpnI GGTACC 1 cut(s) 322
Kzo9I GATC 5 cut(s) 113, 136, 180, 207, 211
Lsp1109I GCAGC 2 cut(s) 197, 447
LweI GCATC 2 cut(s) 368, 496
MaeI CTAG 3 cut(s) 308, 354, 368
MaeIII GTNAC 1 cut(s) 142
MalI GATC 5 cut(s) 115, 138, 182, 209, 213
MboI GATC 5 cut(s) 113, 136, 180, 207, 211
MboII GAAGA 1 cut(s) 290
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 2 cut(s) 46, 307
Mly113I GGCGCC 1 cut(s) 80
MlyI GAGTC 2 cut(s) 139, 173
MnlI CCTC 9 cut(s) 70, 88, 260, 309, 325, 424, 432, 435, 477
MseI TTAA 1 cut(s) 446
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 7 cut(s) 11, 40, 59, 134, 149, 458, 473
MspR9I CCNGG 9 cut(s) 40, 41, 59, 60, 134, 205, 350, 452, 473
Mva1269I GAATGC 1 cut(s) 270
MvaI CCWGG 3 cut(s) 205, 350, 452
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 1 cut(s) 182
NarI GGCGCC 1 cut(s) 80
NciI CCSGG 6 cut(s) 40, 41, 59, 60, 134, 473
NdeII GATC 5 cut(s) 113, 136, 180, 207, 211
NheI GCTAGC 1 cut(s) 367
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 5 cut(s) 81, 115, 123, 320, 456
NmuCI GTSAC 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 220
PctI GAATGC 1 cut(s) 270
PfoI TCCNGGA 3 cut(s) 132, 203, 471
PkrI GCNGC 3 cut(s) 187, 385, 437
Ple19I CGATCG 1 cut(s) 214
PleI GAGTC 2 cut(s) 139, 172
PluTI GGCGCC 1 cut(s) 83
PpsI GAGTC 2 cut(s) 139, 172
Psp6I CCWGG 3 cut(s) 203, 348, 450
PspFI CCCAGC 1 cut(s) 363
PspGI CCWGG 3 cut(s) 203, 348, 450
PspN4I GGNNCC 5 cut(s) 81, 115, 123, 320, 456
PspPI GGNCC 2 cut(s) 121, 346
PstNI CAGNNNCTG 1 cut(s) 349
PsuI RGATCY 1 cut(s) 113
PvuI CGATCG 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 3 cut(s) 229, 320, 414
RsaNI GTAC 3 cut(s) 228, 319, 413
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 3 cut(s) 186, 384, 436
Sau3AI GATC 5 cut(s) 113, 136, 180, 207, 211
Sau96I GGNCC 2 cut(s) 121, 346
SchI GAGTC 2 cut(s) 139, 173
ScrFI CCNGG 9 cut(s) 40, 41, 59, 60, 134, 205, 350, 452, 473
SduI GDGCHC 2 cut(s) 46, 307
SfaNI GCATC 2 cut(s) 368, 496
SfoI GGCGCC 1 cut(s) 81
SinI GGWCC 1 cut(s) 121
SmaI CCCGGG 2 cut(s) 41, 60
SmlI CTYRAG 1 cut(s) 481
SmoI CTYRAG 1 cut(s) 481
SrfI GCCCGGGC 1 cut(s) 41
SsiI CCGC 2 cut(s) 247, 384
SspDI GGCGCC 1 cut(s) 79
SspMI CTAG 3 cut(s) 308, 354, 368
StyD4I CCNGG 9 cut(s) 38, 39, 57, 58, 132, 203, 348, 450, 471
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 4 cut(s) 34, 292, 412, 524
TaqI TCGA 1 cut(s) 210
TauI GCSGC 1 cut(s) 386
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 2 cut(s) 185, 435
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 3 cut(s) 17, 57, 297
TspGWI ACGGA 1 cut(s) 443
TspMI CCCGGG 2 cut(s) 39, 58
VpaK11BI GGWCC 1 cut(s) 121
XmaI CCCGGG 2 cut(s) 39, 58
XmiI GTMKAC 1 cut(s) 462
XspI CTAG 3 cut(s) 308, 354, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.