Rmu_sc0001483.1_g000028

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001483.1
OG0000633
Physical Location & Seq
Reverse (-)
135683 .. 135976
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001483.1_g000028.1.cds

Sequence Viewer

Length: 294 bp
atgcgagctgagatcgcagccttcagggaacaatccaggatcgatcgggaacaacagagtaccgatagggaaacaaaccgccttatgcaacagagaatgcaggatttggaagaggaaaacacagcgctggcccgagcactggacaggaggcaccagcacaacgaggcactcacccaggccctggctagagcatcccagctagcagcaggcgtgaacgctgccccgataaccgaagaccccagcaccgccccagcaccgccccagcaccttctacagagggcagtcaacggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.88

Weight (kDa)

5.88

Isoelectric Point (pI)

63.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 150
AccB7I CCANNNNNTGG 1 cut(s) 181
AciI CCGC 3 cut(s) 79, 246, 257
AclWI GGATC 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 7
AfaI GTAC 1 cut(s) 61
AfeI AGCGCT 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 139, 181
AjnI CCWGG 3 cut(s) 35, 174, 180
AluBI AGCT 2 cut(s) 8, 199
AluI AGCT 2 cut(s) 8, 199
Alw21I GWGCWC 1 cut(s) 139
AlwI GGATC 1 cut(s) 47
AlwNI CAGNNNCTG 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 132
Aor51HI AGCGCT 1 cut(s) 126
AoxI GGCC 2 cut(s) 129, 177
ApeKI GCWGC 3 cut(s) 17, 203, 218
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 2 cut(s) 130, 178
AsuHPI GGTGA 1 cut(s) 163
AsuNHI GCTAGC 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 132
BanI GGYRCC 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 3 cut(s) 29, 205, 215
BciT130I CCWGG 3 cut(s) 37, 176, 182
BfaI CTAG 2 cut(s) 186, 200
BfmI CTRYAG 1 cut(s) 272
BfoI RGCGCY 1 cut(s) 128
BisI GCNGC 3 cut(s) 18, 204, 219
BlsI GCNGC 3 cut(s) 19, 205, 220
Bme1390I CCNGG 3 cut(s) 37, 176, 182
BmeT110I CYCGRG 1 cut(s) 132
BmgT120I GGNCC 2 cut(s) 130, 178
BmiI GGNNCC 1 cut(s) 152
BmrFI CCNGG 3 cut(s) 37, 176, 182
BmsI GCATC 1 cut(s) 200
BmtI GCTAGC 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 240
Bsa29I ATCGAT 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 174, 180
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 181
Bse1I ACTGG 1 cut(s) 144
BseBI CCWGG 3 cut(s) 37, 176, 182
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 174, 180
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 2 cut(s) 139, 181
BseNI ACTGG 1 cut(s) 144
BseXI GCAGC 3 cut(s) 29, 205, 215
BseYI CCCAGC 4 cut(s) 195, 239, 250, 261
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 2 cut(s) 131, 179
BshNI GGYRCC 1 cut(s) 150
BshVI ATCGAT 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 139
BsiHKCI CYCGRG 1 cut(s) 132
BslI CCNNNNNNNGG 2 cut(s) 139, 181
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 2 cut(s) 131, 179
BsoBI CYCGRG 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 3 cut(s) 12, 39, 43
BspACI CCGC 3 cut(s) 79, 246, 257
BspANI GGCC 2 cut(s) 131, 179
BspDI ATCGAT 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 152
BspOI GCTAGC 1 cut(s) 203
BspPI GGATC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 150
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 174, 180
BssMI GATC 3 cut(s) 12, 39, 43
Bst2UI CCWGG 3 cut(s) 37, 176, 182
Bst6I CTCTTC 1 cut(s) 105
BstC8I GCNNGC 4 cut(s) 6, 129, 201, 208
BstDEI CTNAG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 191
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 3 cut(s) 15, 42, 46
BstMBI GATC 3 cut(s) 12, 39, 43
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 3 cut(s) 37, 176, 182
BstSCI CCNGG 3 cut(s) 35, 174, 180
BstSFI CTRYAG 1 cut(s) 272
BstV1I GCAGC 3 cut(s) 29, 205, 215
BstV2I GAAGAC 1 cut(s) 240
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 2 cut(s) 131, 179
BsuTUI ATCGAT 1 cut(s) 42
BtsCI GGATG 1 cut(s) 191
BtsIMutI CAGTG 1 cut(s) 137
Cac8I GCNNGC 4 cut(s) 6, 129, 201, 208
CaiI CAGNNNCTG 1 cut(s) 181
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 2 cut(s) 130, 178
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 1 cut(s) 60
CviJI RGCY 6 cut(s) 8, 20, 131, 179, 185, 199
CviKI_1 RGCY 6 cut(s) 8, 20, 131, 179, 185, 199
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 1 cut(s) 9
DpnI GATC 3 cut(s) 14, 41, 45
DpnII GATC 3 cut(s) 12, 39, 43
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco47III AGCGCT 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 3 cut(s) 35, 174, 180
FaiI YATR 1 cut(s) 86
Fnu4HI GCNGC 3 cut(s) 18, 204, 219
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 3 cut(s) 18, 204, 219
FspBI CTAG 2 cut(s) 186, 200
GlaI GCGC 1 cut(s) 126
GluI GCNGC 3 cut(s) 18, 204, 219
GsaI CCCAGC 4 cut(s) 199, 243, 254, 265
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 2 cut(s) 131, 179
HhaI GCGC 1 cut(s) 127
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 2 cut(s) 214, 286
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 2 cut(s) 214, 286
HpyAV CCTTC 2 cut(s) 31, 278
HpyCH4V TGCA 2 cut(s) 88, 100
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 9
HspAI GCGC 1 cut(s) 125
Kzo9I GATC 3 cut(s) 12, 39, 43
Lsp1109I GCAGC 3 cut(s) 29, 205, 215
LweI GCATC 1 cut(s) 200
MaeI CTAG 2 cut(s) 186, 200
MalI GATC 3 cut(s) 14, 41, 45
MboI GATC 3 cut(s) 12, 39, 43
MboII GAAGA 2 cut(s) 122, 245
MhlI GDGCHC 1 cut(s) 139
MnlI CCTC 4 cut(s) 106, 141, 157, 270
MspR9I CCNGG 3 cut(s) 37, 176, 182
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 3 cut(s) 37, 176, 182
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 3 cut(s) 12, 39, 43
NheI GCTAGC 1 cut(s) 199
NlaIV GGNNCC 1 cut(s) 152
PctI GAATGC 1 cut(s) 102
PflMI CCANNNNNTGG 1 cut(s) 181
PfoI TCCNGGA 1 cut(s) 35
PkrI GCNGC 3 cut(s) 19, 205, 220
Ple19I CGATCG 1 cut(s) 46
Psp6I CCWGG 3 cut(s) 35, 174, 180
PspFI CCCAGC 4 cut(s) 195, 239, 250, 261
PspGI CCWGG 3 cut(s) 35, 174, 180
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 2 cut(s) 130, 178
PstNI CAGNNNCTG 1 cut(s) 181
PvuI CGATCG 1 cut(s) 46
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SatI GCNGC 3 cut(s) 18, 204, 219
Sau3AI GATC 3 cut(s) 12, 39, 43
Sau96I GGNCC 2 cut(s) 130, 178
ScrFI CCNGG 3 cut(s) 37, 176, 182
SduI GDGCHC 1 cut(s) 139
SetI ASST 3 cut(s) 10, 201, 270
SfaNI GCATC 1 cut(s) 200
SfcI CTRYAG 1 cut(s) 272
SsiI CCGC 3 cut(s) 79, 246, 257
SspMI CTAG 2 cut(s) 186, 200
StyD4I CCNGG 3 cut(s) 35, 174, 180
TaqI TCGA 1 cut(s) 42
TscAI CASTG 1 cut(s) 144
TseI GCWGC 3 cut(s) 17, 203, 218
TspRI CASTG 1 cut(s) 144
Van91I CCANNNNNTGG 1 cut(s) 181
XspI CTAG 2 cut(s) 186, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.