Rmu_co8240317.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8240317.1
OG0000633
Physical Location & Seq
Forward (+)
1 .. 410
410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8240317.1_g000001.1.cds

Sequence Viewer

Length: 410 bp
agttggaggacgagaacattgcactcgcttgggcactggaccgacgataccaacataatgaagcactcacccaagcccttggtagagcatcacaggtagctgcgatagagttaaatattgccccggttacaggagtgactagtactgtacctactccgtccatcggtgctggccaacaagtcatccacataccaacatatttgttctcggaaagcctgaagcatatgccgcctccccttttgccccagcccccccaaacggagctatcgataactgacccaaacatgacactgctcttacaggtgagcaactctctgaatgcccttcgggcaaggatggaggcagcggagaatagggacacttggcgtcccctgacaactttcgaggactgtccgggccctttcacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.81

Weight (kDa)

4.86

Isoelectric Point (pI)

57.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 229, 346
AcoI YGGCCR 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 238
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 2 cut(s) 144, 149
AfiI CCNNNNNNNGG 3 cut(s) 130, 163, 258
AhlI ACTAGT 1 cut(s) 139
AluBI AGCT 2 cut(s) 100, 264
AluI AGCT 2 cut(s) 100, 264
AoxI GGCC 2 cut(s) 171, 396
ApaI GGGCCC 1 cut(s) 400
ApeKI GCWGC 2 cut(s) 100, 343
AspS9I GGNCC 3 cut(s) 39, 396, 397
AsuC2I CCSGG 2 cut(s) 124, 395
AsuHPI GGTGA 2 cut(s) 60, 315
AvaII GGWCC 1 cut(s) 39
BaeGI GKGCMC 2 cut(s) 36, 400
BalI TGGCCA 1 cut(s) 173
BanII GRGCYC 1 cut(s) 400
BbvI GCAGC 2 cut(s) 87, 355
BccI CCATC 2 cut(s) 169, 330
BcgI CGANNNNNNTGC 1 cut(s) 35
BcnI CCSGG 2 cut(s) 124, 395
BcuI ACTAGT 1 cut(s) 139
BfaI CTAG 1 cut(s) 140
BglI GCCNNNNNGGC 1 cut(s) 328
BisI GCNGC 3 cut(s) 101, 229, 344
BlsI GCNGC 3 cut(s) 102, 230, 345
BmcAI AGTACT 1 cut(s) 144
Bme1390I CCNGG 2 cut(s) 124, 395
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 3 cut(s) 39, 396, 397
BmiI GGNNCC 1 cut(s) 398
BmrFI CCNGG 2 cut(s) 124, 395
BmsI GCATC 1 cut(s) 97
BplI GAGNNNNNCTC 2 cut(s) 297, 329
BpuMI CCSGG 2 cut(s) 124, 395
Bsa29I ATCGAT 1 cut(s) 268
BsaHI GRCGYC 1 cut(s) 366
BsaJI CCNNGG 2 cut(s) 78, 122
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 163, 258
Bse1I ACTGG 1 cut(s) 41
Bse3DI GCAATG 1 cut(s) 17
BseCI ATCGAT 1 cut(s) 268
BseDI CCNNGG 2 cut(s) 78, 122
BseGI GGATG 2 cut(s) 182, 341
BseLI CCNNNNNNNGG 3 cut(s) 130, 163, 258
BseMI GCAATG 1 cut(s) 17
BseNI ACTGG 1 cut(s) 41
BseSI GKGCMC 2 cut(s) 36, 400
BseXI GCAGC 2 cut(s) 87, 355
BseYI CCCAGC 1 cut(s) 245
BshFI GGCC 2 cut(s) 173, 398
BshVI ATCGAT 1 cut(s) 268
BsiSI CCGG 2 cut(s) 124, 394
BslFI GGGAC 2 cut(s) 353, 370
BslI CCNNNNNNNGG 3 cut(s) 130, 163, 258
BsmFI GGGAC 2 cut(s) 353, 370
BsmI GAATGC 1 cut(s) 324
BsnI GGCC 2 cut(s) 173, 398
Bsp120I GGGCCC 1 cut(s) 396
Bsp1286I GDGCHC 2 cut(s) 36, 400
BspACI CCGC 2 cut(s) 229, 346
BspANI GGCC 2 cut(s) 173, 398
BspDI ATCGAT 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 17
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 2 cut(s) 78, 122
BssNI GRCGYC 1 cut(s) 366
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 147, 391
BstACI GRCGYC 1 cut(s) 366
BstC8I GCNNGC 1 cut(s) 171
BstF5I GGATG 2 cut(s) 182, 341
BstMWI GCNNNNNNNGC 2 cut(s) 228, 328
BstSCI CCNGG 2 cut(s) 122, 393
BstSLI GKGCMC 2 cut(s) 36, 400
BstV1I GCAGC 2 cut(s) 87, 355
BstXI CCANNNNNNTGG 1 cut(s) 79
Bsu15I ATCGAT 1 cut(s) 268
BsuRI GGCC 2 cut(s) 173, 398
BsuTUI ATCGAT 1 cut(s) 268
BtsCI GGATG 2 cut(s) 182, 341
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 2 cut(s) 34, 289
Cac8I GCNNGC 1 cut(s) 171
Cfr13I GGNCC 3 cut(s) 39, 396, 397
ClaI ATCGAT 1 cut(s) 268
CseI GACGC 1 cut(s) 355
Csp6I GTAC 2 cut(s) 143, 148
CviAII CATG 1 cut(s) 285
CviJI RGCY 7 cut(s) 76, 100, 173, 215, 249, 264, 398
CviKI_1 RGCY 7 cut(s) 76, 100, 173, 215, 249, 264, 398
CviQI GTAC 2 cut(s) 143, 148
EaeI YGGCCR 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 400
Eco47I GGWCC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 397
EcoT14I CCWWGG 1 cut(s) 78
EcoT38I GRGCYC 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 1 cut(s) 288
FaiI YATR 7 cut(s) 56, 190, 198, 224, 226, 286, 408
FaqI GGGAC 2 cut(s) 353, 370
FatI CATG 1 cut(s) 284
FauNDI CATATG 1 cut(s) 224
Fnu4HI GCNGC 3 cut(s) 101, 229, 344
FokI GGATG 2 cut(s) 169, 348
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 3 cut(s) 101, 229, 344
FspBI CTAG 1 cut(s) 140
GluI GCNGC 3 cut(s) 101, 229, 344
GsaI CCCAGC 1 cut(s) 249
HaeIII GGCC 2 cut(s) 173, 398
HapII CCGG 2 cut(s) 124, 394
HgaI GACGC 1 cut(s) 355
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 1 cut(s) 288
HpaII CCGG 2 cut(s) 124, 394
HphI GGTGA 2 cut(s) 60, 315
Hpy188I TCNGA 2 cut(s) 210, 317
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 334
HpyCH4III ACNGT 2 cut(s) 147, 391
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 328
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 1 cut(s) 288
LmnI GCTCC 1 cut(s) 261
LpnPI CCDG 9 cut(s) 22, 79, 116, 137, 155, 229, 259, 286, 385
Lsp1109I GCAGC 2 cut(s) 87, 355
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 126, 135
MhlI GDGCHC 2 cut(s) 36, 400
MlsI TGGCCA 1 cut(s) 173
MluNI TGGCCA 1 cut(s) 173
MnlI CCTC 3 cut(s) 242, 333, 378
Mox20I TGGCCA 1 cut(s) 173
MscI TGGCCA 1 cut(s) 173
MseI TTAA 1 cut(s) 112
Msp20I TGGCCA 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 346
MspI CCGG 2 cut(s) 124, 394
MspR9I CCNGG 2 cut(s) 124, 395
Mva1269I GAATGC 1 cut(s) 324
MwoI GCNNNNNNNGC 2 cut(s) 228, 328
NciI CCSGG 2 cut(s) 124, 395
NdeI CATATG 1 cut(s) 224
NlaIII CATG 1 cut(s) 288
NlaIV GGNNCC 1 cut(s) 398
NmuCI GTSAC 1 cut(s) 135
PcsI WCGNNNNNNNCGW 1 cut(s) 265
PctI GAATGC 1 cut(s) 324
PkrI GCNGC 3 cut(s) 102, 230, 345
PspFI CCCAGC 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 398
PspOMI GGGCCC 1 cut(s) 396
PspPI GGNCC 3 cut(s) 39, 396, 397
RsaI GTAC 2 cut(s) 144, 149
RsaNI GTAC 2 cut(s) 143, 148
SaqAI TTAA 1 cut(s) 112
SatI GCNGC 3 cut(s) 101, 229, 344
Sau96I GGNCC 3 cut(s) 39, 396, 397
ScaI AGTACT 1 cut(s) 144
ScrFI CCNGG 2 cut(s) 124, 395
SduI GDGCHC 2 cut(s) 36, 400
SetI ASST 5 cut(s) 98, 102, 153, 266, 305
SfaNI GCATC 1 cut(s) 97
SinI GGWCC 1 cut(s) 39
SpeI ACTAGT 1 cut(s) 139
SsiI CCGC 2 cut(s) 229, 346
SspI AATATT 1 cut(s) 117
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 2 cut(s) 122, 393
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 147, 391
TaqI TCGA 2 cut(s) 268, 383
TaqII GACCGA 1 cut(s) 56
TatI WGTACW 1 cut(s) 142
TauI GCSGC 1 cut(s) 231
Tru1I TTAA 1 cut(s) 112
Tru9I TTAA 1 cut(s) 112
TscAI CASTG 2 cut(s) 41, 296
TseFI GTSAC 1 cut(s) 135
TseI GCWGC 2 cut(s) 100, 343
Tsp45I GTSAC 1 cut(s) 135
TspDTI ATGAA 1 cut(s) 74
TspGWI ACGGA 2 cut(s) 146, 274
TspRI CASTG 2 cut(s) 41, 296
VpaK11BI GGWCC 1 cut(s) 39
XspI CTAG 1 cut(s) 140
ZrmI AGTACT 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.