Rmu_sc0003033.1_g000062

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003033.1
OG0000633
Physical Location & Seq
Reverse (-)
254677 .. 255246
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003033.1_g000062.1.cds

Sequence Viewer

Length: 570 bp
ctgaacgcttcatacgagactatctggaacgaaaacagggatgagataccgggaccacccccaaggaagttcccgaagaacaaacttacccagcaggataccggaaaattctgcacttaccacgaggatgccggacacaataccaatctgtgtgttgctttgaaaaataccatcgagtccctcatccagcggggcaagctccaacgatacctacctgctaaggagataggagcggtcgacgtatatggccagatattcacgatccacggtgggggtccgaaagagtcgcccgcccaggggaagaaacgaaattctagtttcggtcgtccagaagttttcaacttccataaagccccgcagcaaaacagtggaaccaagtggacatcggtgacattcctgcaggaggaggaagccgatctgaggatgccccatgatgatcccttcctaatcacactccaaatggaccactacataatgtccagggtgctcataggcactggtgcctcggttagcgtattatttcgagatgcatacaaggctttgaatcgaggaagagccaaactgtcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

189

Amino Acids

21.29

Weight (kDa)

9.21

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 223
AccB1I GGYRCC 1 cut(s) 500
AccBSI CCGCTC 1 cut(s) 233
AccI GTMKAC 1 cut(s) 237
AciI CCGC 4 cut(s) 190, 233, 291, 356
AclWI GGATC 2 cut(s) 256, 431
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 2 cut(s) 107, 310
AfiI CCNNNNNNNGG 5 cut(s) 271, 296, 297, 403, 420
AgsI TTSAA 3 cut(s) 163, 340, 544
AjnI CCWGG 2 cut(s) 294, 479
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw21I GWGCWC 1 cut(s) 489
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 2 cut(s) 256, 431
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 358
ApoI RAATTY 2 cut(s) 107, 310
AspS9I GGNCC 3 cut(s) 53, 275, 463
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 400
AvaII GGWCC 3 cut(s) 53, 275, 463
BalI TGGCCA 1 cut(s) 249
BanI GGYRCC 1 cut(s) 500
BauI CACGAG 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 489
BbvI GCAGC 1 cut(s) 370
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 2 cut(s) 296, 481
BciVI GTATCC 1 cut(s) 91
BcnI CCSGG 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 398
BfuAI ACCTGC 1 cut(s) 223
BfuI GTATCC 1 cut(s) 91
BisI GCNGC 1 cut(s) 359
BlsI GCNGC 1 cut(s) 360
Bme1390I CCNGG 3 cut(s) 51, 296, 481
Bme18I GGWCC 3 cut(s) 53, 275, 463
BmgT120I GGNCC 3 cut(s) 53, 275, 463
BmiI GGNNCC 4 cut(s) 54, 276, 373, 502
BmrFI CCNGG 3 cut(s) 51, 296, 481
BmsI GCATC 3 cut(s) 118, 414, 517
Bpu10I CCTNAGC 1 cut(s) 219
BpuMI CCSGG 1 cut(s) 51
BsaJI CCNNGG 6 cut(s) 62, 265, 294, 295, 480, 504
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 5 cut(s) 271, 296, 297, 403, 420
Bse1I ACTGG 1 cut(s) 502
BseBI CCWGG 2 cut(s) 296, 481
BseDI CCNNGG 6 cut(s) 62, 265, 294, 295, 480, 504
BseGI GGATG 4 cut(s) 46, 133, 183, 429
BseLI CCNNNNNNNGG 5 cut(s) 271, 296, 297, 403, 420
BseMII CTCAG 1 cut(s) 410
BseNI ACTGG 1 cut(s) 502
BseRI GAGGAG 1 cut(s) 419
BseXI GCAGC 1 cut(s) 370
BseYI CCCAGC 1 cut(s) 90
BsgI GTGCAG 1 cut(s) 97
Bsh1285I CGRYCG 2 cut(s) 237, 325
BshFI GGCC 1 cut(s) 249
BshNI GGYRCC 1 cut(s) 500
BsiEI CGRYCG 2 cut(s) 237, 325
BsiHKAI GWGCWC 1 cut(s) 489
BsiSI CCGG 3 cut(s) 50, 102, 132
BslFI GGGAC 2 cut(s) 66, 163
BslI CCNNNNNNNGG 5 cut(s) 271, 296, 297, 403, 420
BsmAI GTCTC 1 cut(s) 11
BsmFI GGGAC 2 cut(s) 66, 163
BsnI GGCC 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 489
Bsp143I GATC 3 cut(s) 261, 415, 436
BspACI CCGC 4 cut(s) 190, 233, 291, 356
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 1 cut(s) 411
BspLI GGNNCC 4 cut(s) 54, 276, 373, 502
BspMAI CTGCAG 1 cut(s) 402
BspMI ACCTGC 1 cut(s) 223
BspPI GGATC 2 cut(s) 256, 431
BspQI GCTCTTC 1 cut(s) 547
BspT107I GGYRCC 1 cut(s) 500
BsrBI CCGCTC 1 cut(s) 233
BsrI ACTGG 1 cut(s) 502
BssECI CCNNGG 6 cut(s) 62, 265, 294, 295, 480, 504
BssMI GATC 3 cut(s) 261, 415, 436
BssSI CACGAG 1 cut(s) 122
BssT1I CCWWGG 1 cut(s) 62
Bst2BI CACGAG 1 cut(s) 122
Bst2UI CCWGG 2 cut(s) 296, 481
Bst4CI ACNGT 3 cut(s) 269, 368, 564
Bst6I CTCTTC 1 cut(s) 547
BstC8I GCNNGC 2 cut(s) 197, 291
BstDEI CTNAG 2 cut(s) 219, 419
BstDSI CCRYGG 1 cut(s) 265
BstENI CCTNNNNNAGG 1 cut(s) 401
BstF5I GGATG 4 cut(s) 46, 133, 183, 429
BstKTI GATC 3 cut(s) 264, 418, 439
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 3 cut(s) 261, 415, 436
BstMCI CGRYCG 2 cut(s) 237, 325
BstMWI GCNNNNNNNGC 2 cut(s) 196, 536
BstNI CCWGG 2 cut(s) 296, 481
BstSCI CCNGG 3 cut(s) 49, 294, 479
BstSFI CTRYAG 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 370
BsuI GTATCC 1 cut(s) 91
BsuRI GGCC 1 cut(s) 249
BtgI CCRYGG 1 cut(s) 265
BtsCI GGATG 4 cut(s) 46, 133, 183, 429
BtsIMutI CAGTG 2 cut(s) 373, 495
BveI ACCTGC 1 cut(s) 223
Cac8I GCNNGC 2 cut(s) 197, 291
Cfr13I GGNCC 3 cut(s) 53, 275, 463
CviAII CATG 1 cut(s) 431
CviJI RGCY 6 cut(s) 199, 249, 353, 413, 539, 557
CviKI_1 RGCY 6 cut(s) 199, 249, 353, 413, 539, 557
DdeI CTNAG 2 cut(s) 219, 419
DpnI GATC 3 cut(s) 263, 417, 438
DpnII GATC 3 cut(s) 261, 415, 436
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 547
EarI CTCTTC 1 cut(s) 547
Eco130I CCWWGG 1 cut(s) 62
Eco47I GGWCC 3 cut(s) 53, 275, 463
EcoNI CCTNNNNNAGG 1 cut(s) 401
EcoRII CCWGG 2 cut(s) 294, 479
EcoT14I CCWWGG 1 cut(s) 62
EcoT22I ATGCAT 1 cut(s) 532
ErhI CCWWGG 1 cut(s) 62
FaeI CATG 1 cut(s) 434
FaiI YATR 9 cut(s) 13, 244, 246, 348, 432, 473, 491, 532, 568
FaqI GGGAC 2 cut(s) 66, 163
FatI CATG 1 cut(s) 430
FauI CCCGC 3 cut(s) 183, 298, 363
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 359
FokI GGATG 4 cut(s) 53, 140, 170, 436
Fsp4HI GCNGC 1 cut(s) 359
FspBI CTAG 1 cut(s) 315
GluI GCNGC 1 cut(s) 359
GsaI CCCAGC 1 cut(s) 94
HaeIII GGCC 1 cut(s) 249
HapII CCGG 3 cut(s) 50, 102, 132
Hin1II CATG 1 cut(s) 434
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 3 cut(s) 176, 284, 544
HpaII CCGG 3 cut(s) 50, 102, 132
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 2 cut(s) 238, 381
Hpy188I TCNGA 2 cut(s) 279, 420
Hpy188III TCNNGA 5 cut(s) 25, 73, 259, 329, 524
Hpy8I GTNNAC 2 cut(s) 238, 381
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 451
HpyCH4III ACNGT 3 cut(s) 269, 368, 564
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 3 cut(s) 114, 400, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 536
HpyF3I CTNAG 2 cut(s) 219, 419
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 1 cut(s) 434
Kzo9I GATC 3 cut(s) 261, 415, 436
LguI GCTCTTC 1 cut(s) 547
LmnI GCTCC 2 cut(s) 204, 230
Lsp1109I GCAGC 1 cut(s) 370
LweI GCATC 3 cut(s) 118, 414, 517
MaeI CTAG 1 cut(s) 315
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 388
MalI GATC 3 cut(s) 263, 417, 438
MbiI CCGCTC 1 cut(s) 233
MboI GATC 3 cut(s) 261, 415, 436
MboII GAAGA 3 cut(s) 88, 313, 564
MhlI GDGCHC 1 cut(s) 489
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 2 cut(s) 107, 310
MluNI TGGCCA 1 cut(s) 249
MlyI GAGTC 2 cut(s) 185, 293
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 7 cut(s) 118, 191, 397, 400, 414, 514, 542
Mox20I TGGCCA 1 cut(s) 249
Mph1103I ATGCAT 1 cut(s) 532
MscI TGGCCA 1 cut(s) 249
MslI CAYNNNNRTG 1 cut(s) 126
Msp20I TGGCCA 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 190
MspI CCGG 3 cut(s) 50, 102, 132
MspR9I CCNGG 3 cut(s) 51, 296, 481
MvaI CCWGG 2 cut(s) 296, 481
MwoI GCNNNNNNNGC 2 cut(s) 196, 536
NciI CCSGG 1 cut(s) 51
NdeII GATC 3 cut(s) 261, 415, 436
NlaIII CATG 1 cut(s) 434
NlaIV GGNNCC 4 cut(s) 54, 276, 373, 502
NmuCI GTSAC 1 cut(s) 388
NsiI ATGCAT 1 cut(s) 532
PasI CCCWGGG 1 cut(s) 295
PciSI GCTCTTC 1 cut(s) 547
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PfeI GAWTC 1 cut(s) 544
PkrI GCNGC 1 cut(s) 360
PleI GAGTC 2 cut(s) 184, 292
PpsI GAGTC 2 cut(s) 184, 292
Psp6I CCWGG 2 cut(s) 294, 479
PspFI CCCAGC 1 cut(s) 90
PspGI CCWGG 2 cut(s) 294, 479
PspN4I GGNNCC 4 cut(s) 54, 276, 373, 502
PspPI GGNCC 3 cut(s) 53, 275, 463
PsrI GAACNNNNNNTAC 1 cut(s) 28
PstI CTGCAG 1 cut(s) 402
RseI CAYNNNNRTG 1 cut(s) 126
SalI GTCGAC 1 cut(s) 236
SapI GCTCTTC 1 cut(s) 547
SatI GCNGC 1 cut(s) 359
Sau3AI GATC 3 cut(s) 261, 415, 436
Sau96I GGNCC 3 cut(s) 53, 275, 463
SbfI CCTGCAGG 1 cut(s) 402
SchI GAGTC 2 cut(s) 185, 293
ScrFI CCNGG 3 cut(s) 51, 296, 481
SdaI CCTGCAGG 1 cut(s) 402
SduI GDGCHC 1 cut(s) 489
SetI ASST 4 cut(s) 201, 213, 217, 243
SfaNI GCATC 3 cut(s) 118, 414, 517
SfcI CTRYAG 1 cut(s) 398
SinI GGWCC 3 cut(s) 53, 275, 463
SmiMI CAYNNNNRTG 1 cut(s) 126
Sse8387I CCTGCAGG 1 cut(s) 402
Sse9I AATT 2 cut(s) 107, 310
SsiI CCGC 4 cut(s) 190, 233, 291, 356
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 3 cut(s) 49, 294, 479
StyI CCWWGG 1 cut(s) 62
TaaI ACNGT 3 cut(s) 269, 368, 564
TaiI ACGT 1 cut(s) 243
TaqI TCGA 4 cut(s) 174, 237, 523, 547
TaqII GACCGA 1 cut(s) 311
TasI AATT 2 cut(s) 107, 310
TfiI GAWTC 1 cut(s) 544
TscAI CASTG 2 cut(s) 373, 502
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 1 cut(s) 358
Tsp45I GTSAC 1 cut(s) 388
TspRI CASTG 2 cut(s) 373, 502
VpaK11BI GGWCC 3 cut(s) 53, 275, 463
XagI CCTNNNNNAGG 1 cut(s) 401
XapI RAATTY 2 cut(s) 107, 310
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 1 cut(s) 315
Zsp2I ATGCAT 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.