Rmu_sc0004391.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004391.1
OG0000633
Physical Location & Seq
Reverse (-)
97010 .. 97674
665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004391.1_g000020.1.cds

Sequence Viewer

Length: 408 bp
atggcatcagaagaccaacctatgtcccacatcgaatataggggagactccttccccgtgtgcgagagttcgatcggtgtcccaggcgctatagcattttgtttgaggtacccggagaaagccaccagaaacattggcgcgctagatagggaaacgccaagtgtcggaagagaaatgcatggtcccggattcttggacccacagcaccccgaggcccaggatcaggtagctccggtatcggagttggagtctttgcgagcagagatcgcagccttctgggaacaagccagaattgatcgggaacaacaaagaaccgatagggaaacaaatcgcctttcgcaacaaagactgcaagagctagaacacgaaaacaccgcgctggcccaagctctggacaggaggcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.32

Weight (kDa)

4.99

Isoelectric Point (pI)

66.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 108
AccB7I CCANNNNNTGG 1 cut(s) 391
AccII CGCG 2 cut(s) 140, 377
AciI CCGC 1 cut(s) 375
AclWI GGATC 1 cut(s) 228
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 3 cut(s) 164, 223, 391
AjnI CCWGG 2 cut(s) 82, 216
AluBI AGCT 3 cut(s) 230, 358, 389
AluI AGCT 3 cut(s) 230, 358, 389
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 1 cut(s) 228
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 2 cut(s) 213, 381
ApeKI GCWGC 1 cut(s) 269
Asp718I GGTACC 1 cut(s) 108
AspLEI GCGC 4 cut(s) 89, 140, 142, 379
AspS9I GGNCC 4 cut(s) 182, 196, 214, 382
AsuC2I CCSGG 2 cut(s) 113, 186
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 2 cut(s) 182, 196
BanI GGYRCC 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 281
BciT130I CCWGG 2 cut(s) 84, 218
BcnI CCSGG 2 cut(s) 113, 186
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 3 cut(s) 143, 359, 406
BfmI CTRYAG 1 cut(s) 90
BfoI RGCGCY 1 cut(s) 90
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 4 cut(s) 84, 113, 186, 218
Bme18I GGWCC 2 cut(s) 182, 196
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 4 cut(s) 182, 196, 214, 382
BmiI GGNNCC 3 cut(s) 110, 184, 198
BmrFI CCNGG 4 cut(s) 84, 113, 186, 218
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 18
BpuMI CCSGG 2 cut(s) 113, 186
BsaJI CCNNGG 3 cut(s) 82, 210, 216
BsaWI WCCGGW 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 223, 391
BseBI CCWGG 2 cut(s) 84, 218
BseDI CCNNGG 3 cut(s) 82, 210, 216
BseLI CCNNNNNNNGG 3 cut(s) 164, 223, 391
BsePI GCGCGC 1 cut(s) 138
BseXI GCAGC 1 cut(s) 281
Bsh1236I CGCG 2 cut(s) 140, 377
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 2 cut(s) 215, 383
BshNI GGYRCC 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 3 cut(s) 113, 186, 233
BslFI GGGAC 3 cut(s) 10, 65, 168
BslI CCNNNNNNNGG 3 cut(s) 164, 223, 391
BsmAI GTCTC 1 cut(s) 39
BsmFI GGGAC 3 cut(s) 10, 65, 168
BsnI GGCC 2 cut(s) 215, 383
BsoBI CYCGRG 1 cut(s) 209
Bsp143I GATC 4 cut(s) 72, 220, 264, 295
BspACI CCGC 1 cut(s) 375
BspANI GGCC 2 cut(s) 215, 383
BspFNI CGCG 2 cut(s) 140, 377
BspLI GGNNCC 3 cut(s) 110, 184, 198
BspPI GGATC 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 108
BssECI CCNNGG 3 cut(s) 82, 210, 216
BssHII GCGCGC 1 cut(s) 138
BssMI GATC 4 cut(s) 72, 220, 264, 295
Bst2UI CCWGG 2 cut(s) 84, 218
Bst6I CTCTTC 1 cut(s) 163
BstC8I GCNNGC 3 cut(s) 140, 258, 381
BstFNI CGCG 2 cut(s) 140, 377
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 4 cut(s) 89, 140, 142, 379
BstKTI GATC 4 cut(s) 75, 223, 267, 298
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 4 cut(s) 72, 220, 264, 295
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 2 cut(s) 84, 218
BstSCI CCNGG 4 cut(s) 82, 111, 184, 216
BstSFI CTRYAG 1 cut(s) 90
BstUI CGCG 2 cut(s) 140, 377
BstV1I GCAGC 1 cut(s) 281
BstV2I GAAGAC 1 cut(s) 18
BsuRI GGCC 2 cut(s) 215, 383
Cac8I GCNNGC 3 cut(s) 140, 258, 381
CfoI GCGC 4 cut(s) 89, 140, 142, 379
Cfr13I GGNCC 4 cut(s) 182, 196, 214, 382
Csp6I GTAC 1 cut(s) 109
CviAII CATG 1 cut(s) 179
CviJI RGCY 8 cut(s) 122, 215, 230, 272, 287, 358, 383, 389
CviKI_1 RGCY 8 cut(s) 122, 215, 230, 272, 287, 358, 383, 389
CviQI GTAC 1 cut(s) 109
DpnI GATC 4 cut(s) 74, 222, 266, 297
DpnII GATC 4 cut(s) 72, 220, 264, 295
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
Eco47I GGWCC 2 cut(s) 182, 196
Eco88I CYCGRG 1 cut(s) 209
EcoRII CCWGG 2 cut(s) 82, 216
EcoT22I ATGCAT 1 cut(s) 180
FaeI CATG 1 cut(s) 182
FaiI YATR 4 cut(s) 23, 39, 92, 180
FaqI GGGAC 3 cut(s) 10, 65, 168
FatI CATG 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 3 cut(s) 143, 359, 406
GlaI GCGC 4 cut(s) 88, 139, 141, 378
GluI GCNGC 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 2 cut(s) 215, 383
HapII CCGG 3 cut(s) 113, 186, 233
HhaI GCGC 4 cut(s) 89, 140, 142, 379
Hin1II CATG 1 cut(s) 182
Hin6I GCGC 4 cut(s) 87, 138, 140, 377
HinP1I GCGC 4 cut(s) 87, 138, 140, 377
HinfI GANTC 3 cut(s) 47, 189, 248
HpaII CCGG 3 cut(s) 113, 186, 233
Hpy188I TCNGA 3 cut(s) 10, 167, 241
Hpy188III TCNNGA 2 cut(s) 299, 392
HpyAV CCTTC 2 cut(s) 61, 283
HpyCH4V TGCA 2 cut(s) 178, 352
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
Hsp92II CATG 1 cut(s) 182
HspAI GCGC 4 cut(s) 87, 138, 140, 377
KpnI GGTACC 1 cut(s) 112
Kzo9I GATC 4 cut(s) 72, 220, 264, 295
LmnI GCTCC 1 cut(s) 235
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 1 cut(s) 14
MaeI CTAG 3 cut(s) 143, 359, 406
MalI GATC 4 cut(s) 74, 222, 266, 297
MboI GATC 4 cut(s) 72, 220, 264, 295
MboII GAAGA 2 cut(s) 23, 180
MluCI AATT 1 cut(s) 291
MlyI GAGTC 2 cut(s) 41, 257
MmeI TCCRAC 2 cut(s) 145, 225
MnlI CCTC 3 cut(s) 99, 205, 393
Mph1103I ATGCAT 1 cut(s) 180
MspI CCGG 3 cut(s) 113, 186, 233
MspR9I CCNGG 4 cut(s) 84, 113, 186, 218
MvaI CCWGG 2 cut(s) 84, 218
MvnI CGCG 2 cut(s) 140, 377
MwoI GCNNNNNNNGC 1 cut(s) 266
NciI CCSGG 2 cut(s) 113, 186
NdeII GATC 4 cut(s) 72, 220, 264, 295
NlaIII CATG 1 cut(s) 182
NlaIV GGNNCC 3 cut(s) 110, 184, 198
NsiI ATGCAT 1 cut(s) 180
PauI GCGCGC 1 cut(s) 138
PfeI GAWTC 1 cut(s) 189
PflMI CCANNNNNTGG 1 cut(s) 391
PfoI TCCNGGA 1 cut(s) 184
PkrI GCNGC 1 cut(s) 271
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 2 cut(s) 41, 256
PpsI GAGTC 2 cut(s) 41, 256
Psp6I CCWGG 2 cut(s) 82, 216
PspGI CCWGG 2 cut(s) 82, 216
PspN4I GGNNCC 3 cut(s) 110, 184, 198
PspPI GGNCC 4 cut(s) 182, 196, 214, 382
PteI GCGCGC 1 cut(s) 138
PvuI CGATCG 1 cut(s) 75
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 4 cut(s) 72, 220, 264, 295
Sau96I GGNCC 4 cut(s) 182, 196, 214, 382
SchI GAGTC 2 cut(s) 41, 257
ScrFI CCNGG 4 cut(s) 84, 113, 186, 218
SetI ASST 6 cut(s) 22, 110, 228, 232, 360, 391
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 90
SinI GGWCC 2 cut(s) 182, 196
Sse9I AATT 1 cut(s) 291
SsiI CCGC 1 cut(s) 375
SspMI CTAG 3 cut(s) 143, 359, 406
StyD4I CCNGG 4 cut(s) 82, 111, 184, 216
TaqI TCGA 2 cut(s) 33, 71
TasI AATT 1 cut(s) 291
TfiI GAWTC 1 cut(s) 189
TseI GCWGC 1 cut(s) 269
Van91I CCANNNNNTGG 1 cut(s) 391
VpaK11BI GGWCC 2 cut(s) 182, 196
XspI CTAG 3 cut(s) 143, 359, 406
Zsp2I ATGCAT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.