Rmu_sc0002054.1_g000022

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002054.1
OG0000633
Physical Location & Seq
Forward (+)
138329 .. 138844
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002054.1_g000022.1.cds

Sequence Viewer

Length: 516 bp
atgagtgagccagaagtggcaggtgaggggagaagtgtcgccggggcacttgtattctccccgggaacttcatcagcagaggcgccagctgttcgggaggaaatccatggtctcggatccttggacccaatagtcccggataaggtgactcctgtatcggagttagagtccacgcgagctgagatcgcagccttcagggagcagtccaggatcgatcgggaacaacaaagtaccgatagggaaacaaaccgccacacgcaacagagaatgcaggatttggaagatgaaaacacggcgctggcccgagcactagacaggaggcaccaacacaacgaggcacttactcaggccctggctagagcatcccagctagcagacctgaacgctgccccgataacaggaaacaccagcaccgcaccagcacctcctacgaagggcagccagaggttaatccaggtaccggtagacttattcccggaaagcttgaggcatctaccaccaccacctttaccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.5

Weight (kDa)

5.11

Isoelectric Point (pI)

62.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 11
AasI GACNNNNNNGTC 1 cut(s) 131
Acc36I ACCTGC 1 cut(s) 11
Acc65I GGTACC 1 cut(s) 457
AccB1I GGYRCC 3 cut(s) 82, 321, 457
AccI GTMKAC 1 cut(s) 465
AccII CGCG 1 cut(s) 175
AciI CCGC 2 cut(s) 250, 414
AclWI GGATC 3 cut(s) 111, 124, 218
AcuI CTGAAG 1 cut(s) 178
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 2 cut(s) 232, 459
AfiI CCNNNNNNNGG 4 cut(s) 142, 398, 434, 460
AgeI ACCGGT 1 cut(s) 460
AjnI CCWGG 3 cut(s) 206, 351, 453
AluBI AGCT 4 cut(s) 89, 179, 370, 483
AluI AGCT 4 cut(s) 89, 179, 370, 483
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 3 cut(s) 111, 124, 218
AlwNI CAGNNNCTG 1 cut(s) 352
Ama87I CYCGRG 2 cut(s) 61, 303
AoxI GGCC 2 cut(s) 300, 348
ApeKI GCWGC 3 cut(s) 188, 386, 438
AsiGI ACCGGT 1 cut(s) 460
Asp718I GGTACC 1 cut(s) 457
AspLEI GCGC 2 cut(s) 85, 298
AspS9I GGNCC 3 cut(s) 124, 301, 349
AsuC2I CCSGG 5 cut(s) 43, 62, 63, 137, 476
AsuHPI GGTGA 2 cut(s) 35, 157
AsuNHI GCTAGC 1 cut(s) 370
AvaI CYCGRG 2 cut(s) 61, 303
AvaII GGWCC 1 cut(s) 124
BaeGI GKGCMC 1 cut(s) 49
BaeI ACNNNNGTAYC 2 cut(s) 138, 171
BamHI GGATCC 1 cut(s) 116
BanI GGYRCC 3 cut(s) 82, 321, 457
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 3 cut(s) 200, 373, 450
BceAI ACGGC 1 cut(s) 309
BciT130I CCWGG 3 cut(s) 208, 353, 455
BcnI CCSGG 5 cut(s) 43, 62, 63, 137, 476
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 3 cut(s) 311, 357, 371
BfoI RGCGCY 2 cut(s) 86, 299
BfuAI ACCTGC 1 cut(s) 11
BisI GCNGC 3 cut(s) 189, 387, 439
BlsI GCNGC 3 cut(s) 190, 388, 440
Bme1390I CCNGG 8 cut(s) 43, 62, 63, 137, 208, 353, 455, 476
Bme18I GGWCC 1 cut(s) 124
BmeT110I CYCGRG 2 cut(s) 61, 303
BmgT120I GGNCC 3 cut(s) 124, 301, 349
BmiI GGNNCC 5 cut(s) 84, 118, 126, 323, 459
BmrFI CCNGG 8 cut(s) 43, 62, 63, 137, 208, 353, 455, 476
BmsI GCATC 2 cut(s) 371, 499
BmtI GCTAGC 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 505
BpuMI CCSGG 5 cut(s) 43, 62, 63, 137, 476
Bsa29I ATCGAT 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 6 cut(s) 42, 60, 61, 106, 120, 351
BsaWI WCCGGW 1 cut(s) 460
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 398, 434, 460
Bse118I RCCGGY 1 cut(s) 460
BseBI CCWGG 3 cut(s) 208, 353, 455
BseCI ATCGAT 1 cut(s) 213
BseDI CCNNGG 6 cut(s) 42, 60, 61, 106, 120, 351
BseGI GGATG 1 cut(s) 362
BseLI CCNNNNNNNGG 4 cut(s) 142, 398, 434, 460
BseMII CTCAG 2 cut(s) 171, 359
BseSI GKGCMC 1 cut(s) 49
BseXI GCAGC 3 cut(s) 200, 373, 450
BseYI CCCAGC 1 cut(s) 366
Bsh1236I CGCG 1 cut(s) 175
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 2 cut(s) 302, 350
BshNI GGYRCC 3 cut(s) 82, 321, 457
BshTI ACCGGT 1 cut(s) 460
BshVI ATCGAT 1 cut(s) 213
BsiEI CGRYCG 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 310
BsiHKCI CYCGRG 2 cut(s) 61, 303
BsiSI CCGG 5 cut(s) 42, 62, 137, 461, 476
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 4 cut(s) 142, 398, 434, 460
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 273
BsnI GGCC 2 cut(s) 302, 350
Bso31I GGTCTC 1 cut(s) 116
BsoBI CYCGRG 2 cut(s) 61, 303
Bsp1286I GDGCHC 2 cut(s) 49, 310
Bsp143I GATC 4 cut(s) 116, 183, 210, 214
Bsp19I CCATGG 1 cut(s) 106
BspACI CCGC 2 cut(s) 250, 414
BspANI GGCC 2 cut(s) 302, 350
BspCNI CTCAG 2 cut(s) 172, 358
BspDI ATCGAT 1 cut(s) 213
BspFNI CGCG 1 cut(s) 175
BspLI GGNNCC 5 cut(s) 84, 118, 126, 323, 459
BspMI ACCTGC 1 cut(s) 11
BspOI GCTAGC 1 cut(s) 374
BspPI GGATC 3 cut(s) 111, 124, 218
BspT107I GGYRCC 3 cut(s) 82, 321, 457
BspTNI GGTCTC 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 460
BssAI RCCGGY 1 cut(s) 460
BssECI CCNNGG 6 cut(s) 42, 60, 61, 106, 120, 351
BssMI GATC 4 cut(s) 116, 183, 210, 214
BssNI GRCGYC 1 cut(s) 83
BssT1I CCWWGG 2 cut(s) 106, 120
Bst2UI CCWGG 3 cut(s) 208, 353, 455
BstACI GRCGYC 1 cut(s) 83
BstC8I GCNNGC 4 cut(s) 87, 177, 300, 372
BstDEI CTNAG 2 cut(s) 180, 345
BstDSI CCRYGG 1 cut(s) 106
BstF5I GGATG 1 cut(s) 362
BstFNI CGCG 1 cut(s) 175
BstH2I RGCGCY 2 cut(s) 86, 299
BstHHI GCGC 2 cut(s) 85, 298
BstKTI GATC 4 cut(s) 119, 186, 213, 217
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 4 cut(s) 116, 183, 210, 214
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 3 cut(s) 208, 353, 455
BstSCI CCNGG 8 cut(s) 41, 60, 61, 135, 206, 351, 453, 474
BstSLI GKGCMC 1 cut(s) 49
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 3 cut(s) 200, 373, 450
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
Bsu15I ATCGAT 1 cut(s) 213
BsuRI GGCC 2 cut(s) 302, 350
BsuTUI ATCGAT 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 106
BtsCI GGATG 1 cut(s) 362
BveI ACCTGC 1 cut(s) 11
Cac8I GCNNGC 4 cut(s) 87, 177, 300, 372
CaiI CAGNNNCTG 1 cut(s) 352
CfoI GCGC 2 cut(s) 85, 298
Cfr10I RCCGGY 1 cut(s) 460
Cfr13I GGNCC 3 cut(s) 124, 301, 349
Cfr9I CCCGGG 1 cut(s) 61
ClaI ATCGAT 1 cut(s) 213
Csp6I GTAC 2 cut(s) 231, 458
CspAI ACCGGT 1 cut(s) 460
CviAII CATG 1 cut(s) 107
CviQI GTAC 2 cut(s) 231, 458
DdeI CTNAG 2 cut(s) 180, 345
DinI GGCGCC 1 cut(s) 84
DpnI GATC 4 cut(s) 118, 185, 212, 216
DpnII GATC 4 cut(s) 116, 183, 210, 214
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
Eco130I CCWWGG 2 cut(s) 106, 120
Eco31I GGTCTC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 178
Eco88I CYCGRG 2 cut(s) 61, 303
EcoO109I RGGNCCY 1 cut(s) 349
EcoRII CCWGG 3 cut(s) 206, 351, 453
EcoT14I CCWWGG 2 cut(s) 106, 120
EgeI GGCGCC 1 cut(s) 84
EheI GGCGCC 1 cut(s) 84
ErhI CCWWGG 2 cut(s) 106, 120
FaeI CATG 1 cut(s) 110
FaiI YATR 2 cut(s) 108, 514
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 106
FblI GTMKAC 1 cut(s) 465
Fnu4HI GCNGC 3 cut(s) 189, 387, 439
FokI GGATG 1 cut(s) 349
Fsp4HI GCNGC 3 cut(s) 189, 387, 439
FspBI CTAG 3 cut(s) 311, 357, 371
GlaI GCGC 2 cut(s) 84, 297
GluI GCNGC 3 cut(s) 189, 387, 439
GsaI CCCAGC 1 cut(s) 370
HaeII RGCGCY 2 cut(s) 86, 299
HaeIII GGCC 2 cut(s) 302, 350
HapII CCGG 5 cut(s) 42, 62, 137, 461, 476
HhaI GCGC 2 cut(s) 85, 298
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 1 cut(s) 110
Hin6I GCGC 2 cut(s) 83, 296
HinP1I GCGC 2 cut(s) 83, 296
HindIII AAGCTT 1 cut(s) 481
HinfI GANTC 2 cut(s) 148, 167
HpaII CCGG 5 cut(s) 42, 62, 137, 461, 476
HphI GGTGA 2 cut(s) 35, 157
Hpy166II GTNNAC 2 cut(s) 171, 466
Hpy188I TCNGA 2 cut(s) 116, 160
Hpy188III TCNNGA 2 cut(s) 95, 218
Hpy8I GTNNAC 2 cut(s) 171, 466
HpyAV CCTTC 2 cut(s) 202, 427
HpyCH4V TGCA 1 cut(s) 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 2 cut(s) 180, 345
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 1 cut(s) 110
HspAI GCGC 2 cut(s) 83, 296
KasI GGCGCC 1 cut(s) 82
KpnI GGTACC 1 cut(s) 461
Kzo9I GATC 4 cut(s) 116, 183, 210, 214
LmnI GCTCC 1 cut(s) 199
Lsp1109I GCAGC 3 cut(s) 200, 373, 450
LweI GCATC 2 cut(s) 371, 499
MaeI CTAG 3 cut(s) 311, 357, 371
MaeIII GTNAC 1 cut(s) 145
MalI GATC 4 cut(s) 118, 185, 212, 216
MboI GATC 4 cut(s) 116, 183, 210, 214
MboII GAAGA 1 cut(s) 293
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 2 cut(s) 49, 310
Mly113I GGCGCC 1 cut(s) 83
MlyI GAGTC 2 cut(s) 142, 176
MnlI CCTC 8 cut(s) 19, 73, 91, 312, 328, 435, 438, 480
MseI TTAA 1 cut(s) 449
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 5 cut(s) 42, 62, 137, 461, 476
MspR9I CCNGG 8 cut(s) 43, 62, 63, 137, 208, 353, 455, 476
Mva1269I GAATGC 1 cut(s) 273
MvaI CCWGG 3 cut(s) 208, 353, 455
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 185
NarI GGCGCC 1 cut(s) 83
NciI CCSGG 5 cut(s) 43, 62, 63, 137, 476
NcoI CCATGG 1 cut(s) 106
NdeII GATC 4 cut(s) 116, 183, 210, 214
NheI GCTAGC 1 cut(s) 370
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 5 cut(s) 84, 118, 126, 323, 459
NmuCI GTSAC 1 cut(s) 145
PaqCI CACCTGC 1 cut(s) 11
PctI GAATGC 1 cut(s) 273
PfoI TCCNGGA 3 cut(s) 135, 206, 474
PinAI ACCGGT 1 cut(s) 460
PkrI GCNGC 3 cut(s) 190, 388, 440
Ple19I CGATCG 1 cut(s) 217
PleI GAGTC 2 cut(s) 142, 175
PluTI GGCGCC 1 cut(s) 86
PpsI GAGTC 2 cut(s) 142, 175
Psp6I CCWGG 3 cut(s) 206, 351, 453
PspFI CCCAGC 1 cut(s) 366
PspGI CCWGG 3 cut(s) 206, 351, 453
PspN4I GGNNCC 5 cut(s) 84, 118, 126, 323, 459
PspPI GGNCC 3 cut(s) 124, 301, 349
PstNI CAGNNNCTG 1 cut(s) 352
PsuI RGATCY 1 cut(s) 116
PvuI CGATCG 1 cut(s) 217
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 2 cut(s) 232, 459
RsaNI GTAC 2 cut(s) 231, 458
SaqAI TTAA 1 cut(s) 449
SatI GCNGC 3 cut(s) 189, 387, 439
Sau3AI GATC 4 cut(s) 116, 183, 210, 214
Sau96I GGNCC 3 cut(s) 124, 301, 349
SchI GAGTC 2 cut(s) 142, 176
ScrFI CCNGG 8 cut(s) 43, 62, 63, 137, 208, 353, 455, 476
SduI GDGCHC 2 cut(s) 49, 310
SfaNI GCATC 2 cut(s) 371, 499
SfoI GGCGCC 1 cut(s) 84
SinI GGWCC 1 cut(s) 124
SmaI CCCGGG 1 cut(s) 63
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
SsiI CCGC 2 cut(s) 250, 414
SspDI GGCGCC 1 cut(s) 82
SspMI CTAG 3 cut(s) 311, 357, 371
StyD4I CCNGG 8 cut(s) 41, 60, 61, 135, 206, 351, 453, 474
StyI CCWWGG 2 cut(s) 106, 120
TaqI TCGA 1 cut(s) 213
Tru1I TTAA 1 cut(s) 449
Tru9I TTAA 1 cut(s) 449
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 3 cut(s) 188, 386, 438
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 60, 300
TspMI CCCGGG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 124
XmaI CCCGGG 1 cut(s) 61
XmiI GTMKAC 1 cut(s) 465
XspI CTAG 3 cut(s) 311, 357, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.