Rmu_co7980664.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7980664.1
OG0000633
Physical Location & Seq
Forward (+)
1 .. 278
278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7980664.1_g000001.1.cds

Sequence Viewer

Length: 278 bp
taacgccaggtgtccggactaaaacacatggtctgggagctttggacgtacaaggcgtagataacccaccaatcatccctgaccaattggccccggtctctgagttggagtccatgtcagcagagatcgctgacttccgggaacaagccaggatcgatcgggaacaacaaagaatcgatagggaggccaacctcctttcacaacagagactgcaggagctggaggatgaaaacaatgcgcttgcccgggcactggaccaaagacaccagcataactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.28

Weight (kDa)

4.78

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 14
AclWI GGATC 1 cut(s) 160
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 252
AjnI CCWGG 2 cut(s) 6, 148
AluBI AGCT 2 cut(s) 40, 219
AluI AGCT 2 cut(s) 40, 219
Alw26I GTCTC 2 cut(s) 102, 201
AlwI GGATC 1 cut(s) 160
AlwNI CAGNNNCTG 2 cut(s) 210, 219
Ama87I CYCGRG 1 cut(s) 245
Aor13HI TCCGGA 1 cut(s) 14
AoxI GGCC 2 cut(s) 89, 185
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 2 cut(s) 90, 255
AsuC2I CCSGG 4 cut(s) 94, 139, 246, 247
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 255
BaeGI GKGCMC 1 cut(s) 252
BciT130I CCWGG 2 cut(s) 8, 150
BcnI CCSGG 4 cut(s) 94, 139, 246, 247
BcoDI GTCTC 2 cut(s) 102, 201
BfaI CTAG 1 cut(s) 276
BfmI CTRYAG 1 cut(s) 211
Bme1390I CCNGG 6 cut(s) 8, 94, 139, 150, 246, 247
Bme18I GGWCC 1 cut(s) 255
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 2 cut(s) 90, 255
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 6 cut(s) 8, 94, 139, 150, 246, 247
BpmI CTGGAG 1 cut(s) 241
BpuMI CCSGG 4 cut(s) 94, 139, 246, 247
Bsa29I ATCGAT 2 cut(s) 155, 176
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 92, 245
BsaWI WCCGGW 1 cut(s) 14
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse1I ACTGG 1 cut(s) 257
BseAI TCCGGA 1 cut(s) 14
BseBI CCWGG 2 cut(s) 8, 150
BseCI ATCGAT 2 cut(s) 155, 176
BseDI CCNNGG 2 cut(s) 92, 245
BseGI GGATG 2 cut(s) 74, 231
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 257
BseSI GKGCMC 1 cut(s) 252
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 2 cut(s) 91, 187
BshVI ATCGAT 2 cut(s) 155, 176
BsiEI CGRYCG 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 4 cut(s) 15, 94, 138, 246
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 2 cut(s) 102, 201
BsnI GGCC 2 cut(s) 91, 187
Bso31I GGTCTC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 252
Bsp13I TCCGGA 1 cut(s) 14
Bsp143I GATC 3 cut(s) 125, 152, 156
BspANI GGCC 2 cut(s) 91, 187
BspCNI CTCAG 1 cut(s) 93
BspDI ATCGAT 2 cut(s) 155, 176
BspEI TCCGGA 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 92
BspMAI CTGCAG 1 cut(s) 215
BspPI GGATC 1 cut(s) 160
BspTNI GGTCTC 1 cut(s) 102
BsrI ACTGG 1 cut(s) 257
BssECI CCNNGG 2 cut(s) 92, 245
BssMI GATC 3 cut(s) 125, 152, 156
Bst2UI CCWGG 2 cut(s) 8, 150
BstC8I GCNNGC 1 cut(s) 242
BstDEI CTNAG 1 cut(s) 101
BstF5I GGATG 2 cut(s) 74, 231
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 3 cut(s) 128, 155, 159
BstMAI GTCTC 2 cut(s) 102, 201
BstMBI GATC 3 cut(s) 125, 152, 156
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstNI CCWGG 2 cut(s) 8, 150
BstSCI CCNGG 6 cut(s) 6, 92, 137, 148, 244, 245
BstSFI CTRYAG 1 cut(s) 211
BstSLI GKGCMC 1 cut(s) 252
Bsu15I ATCGAT 2 cut(s) 155, 176
BsuRI GGCC 2 cut(s) 91, 187
BsuTUI ATCGAT 2 cut(s) 155, 176
BtsCI GGATG 2 cut(s) 74, 231
BtsIMutI CAGTG 1 cut(s) 250
Cac8I GCNNGC 1 cut(s) 242
CaiI CAGNNNCTG 2 cut(s) 210, 219
CfoI GCGC 1 cut(s) 240
Cfr13I GGNCC 2 cut(s) 90, 255
Cfr9I CCCGGG 1 cut(s) 245
ClaI ATCGAT 2 cut(s) 155, 176
Csp6I GTAC 1 cut(s) 49
CviAII CATG 2 cut(s) 28, 114
CviJI RGCY 5 cut(s) 40, 91, 148, 187, 219
CviKI_1 RGCY 5 cut(s) 40, 91, 148, 187, 219
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 1 cut(s) 101
DpnI GATC 3 cut(s) 127, 154, 158
DpnII GATC 3 cut(s) 125, 152, 156
Eco31I GGTCTC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 245
EcoRII CCWGG 2 cut(s) 6, 148
FaeI CATG 2 cut(s) 31, 117
FaiI YATR 3 cut(s) 29, 115, 272
FatI CATG 2 cut(s) 27, 113
FokI GGATG 2 cut(s) 61, 238
FspBI CTAG 1 cut(s) 276
GlaI GCGC 1 cut(s) 239
GsuI CTGGAG 1 cut(s) 241
HaeIII GGCC 2 cut(s) 91, 187
HapII CCGG 4 cut(s) 15, 94, 138, 246
HhaI GCGC 1 cut(s) 240
Hin1II CATG 2 cut(s) 31, 117
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HinfI GANTC 2 cut(s) 109, 173
HpaII CCGG 4 cut(s) 15, 94, 138, 246
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 2 cut(s) 15, 160
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 1 cut(s) 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 1 cut(s) 101
HpySE526I ACGT 1 cut(s) 47
Hsp92II CATG 2 cut(s) 31, 117
HspAI GCGC 1 cut(s) 238
Kpn2I TCCGGA 1 cut(s) 14
Kzo9I GATC 3 cut(s) 125, 152, 156
LmnI GCTCC 2 cut(s) 37, 216
MaeI CTAG 1 cut(s) 276
MaeII ACGT 1 cut(s) 47
MalI GATC 3 cut(s) 127, 154, 158
MboI GATC 3 cut(s) 125, 152, 156
MfeI CAATTG 1 cut(s) 85
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 1 cut(s) 85
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 86
MnlI CCTC 3 cut(s) 177, 202, 216
MroI TCCGGA 1 cut(s) 14
MspI CCGG 4 cut(s) 15, 94, 138, 246
MspR9I CCNGG 6 cut(s) 8, 94, 139, 150, 246, 247
MunI CAATTG 1 cut(s) 85
MvaI CCWGG 2 cut(s) 8, 150
MwoI GCNNNNNNNGC 1 cut(s) 127
NciI CCSGG 4 cut(s) 94, 139, 246, 247
NdeII GATC 3 cut(s) 125, 152, 156
NlaIII CATG 2 cut(s) 31, 117
NlaIV GGNNCC 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PfeI GAWTC 1 cut(s) 173
PfoI TCCNGGA 1 cut(s) 137
Ple19I CGATCG 1 cut(s) 159
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
Psp6I CCWGG 2 cut(s) 6, 148
PspGI CCWGG 2 cut(s) 6, 148
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 2 cut(s) 90, 255
PstI CTGCAG 1 cut(s) 215
PstNI CAGNNNCTG 2 cut(s) 210, 219
PvuI CGATCG 1 cut(s) 159
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
Sau3AI GATC 3 cut(s) 125, 152, 156
Sau96I GGNCC 2 cut(s) 90, 255
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 6 cut(s) 8, 94, 139, 150, 246, 247
SduI GDGCHC 1 cut(s) 252
SetI ASST 5 cut(s) 12, 42, 50, 194, 221
SfcI CTRYAG 1 cut(s) 211
SinI GGWCC 1 cut(s) 255
SmaI CCCGGG 1 cut(s) 247
SrfI GCCCGGGC 1 cut(s) 247
Sse9I AATT 1 cut(s) 85
SspMI CTAG 1 cut(s) 276
StyD4I CCNGG 6 cut(s) 6, 92, 137, 148, 244, 245
TaiI ACGT 1 cut(s) 50
TaqI TCGA 2 cut(s) 155, 176
TasI AATT 1 cut(s) 85
TfiI GAWTC 1 cut(s) 173
TscAI CASTG 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 242
TspMI CCCGGG 1 cut(s) 245
TspRI CASTG 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 255
XmaI CCCGGG 1 cut(s) 245
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.