Rmu_sc0003760.1_g000026

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003760.1
OG0000633
Physical Location & Seq
Forward (+)
89023 .. 89430
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003760.1_g000026.1.cds

Sequence Viewer

Length: 408 bp
atgctagcagagatcgcagccttccgagaacaagtcaggatcgatagggaaacaaacctcctttcgcaacagagactgcaggagctggaagatgaaaacactgcgctggcccgagcactggatagaaggcaccagcataatgaagcactcacccaagccctagctagagcatcccaggtagtaacatatgtaaatgccgccccagtaactggaggcacctgcctcactccaaccccgtctacggaaagcggtcacctgatgatccaggtaccggtagacttgttcccggaaagcctgaggcatttgccaccacaaccattaccacagccagctcaaagtgacccaccggtaattgatccaaacacggcgttactcttgcaaatgagcaactccttgcataccctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.88

Weight (kDa)

5.21

Isoelectric Point (pI)

62.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 227
Acc36I ACCTGC 1 cut(s) 227
Acc65I GGTACC 1 cut(s) 268
AccB1I GGYRCC 3 cut(s) 129, 215, 268
AccB7I CCANNNNNTGG 1 cut(s) 209
AccI GTMKAC 2 cut(s) 239, 276
AciI CCGC 2 cut(s) 198, 249
AclWI GGATC 3 cut(s) 47, 256, 350
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 4 cut(s) 118, 209, 241, 271
AgeI ACCGGT 2 cut(s) 271, 346
AjnI CCWGG 2 cut(s) 174, 264
AluBI AGCT 3 cut(s) 85, 164, 332
AluI AGCT 3 cut(s) 85, 164, 332
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 67
AlwI GGATC 3 cut(s) 47, 256, 350
AlwNI CAGNNNCTG 3 cut(s) 76, 85, 209
Ama87I CYCGRG 1 cut(s) 111
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 17
AsiGI ACCGGT 2 cut(s) 271, 346
Asp718I GGTACC 1 cut(s) 268
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 109
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 142, 245
AsuNHI GCTAGC 1 cut(s) 4
AvaI CYCGRG 1 cut(s) 111
AxyI CCTNAGG 1 cut(s) 296
BanI GGYRCC 3 cut(s) 129, 215, 268
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 29
BceAI ACGGC 1 cut(s) 381
BciT130I CCWGG 2 cut(s) 176, 266
BcnI CCSGG 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 3 cut(s) 5, 161, 165
BfmI CTRYAG 2 cut(s) 77, 404
BfuAI ACCTGC 1 cut(s) 227
BisI GCNGC 2 cut(s) 18, 198
BlsI GCNGC 2 cut(s) 19, 199
Bme1390I CCNGG 3 cut(s) 176, 266, 287
BmeT110I CYCGRG 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 3 cut(s) 131, 217, 270
BmrFI CCNGG 3 cut(s) 176, 266, 287
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 179
BmtI GCTAGC 1 cut(s) 8
BmuI ACTGGG 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 287
Bsa29I ATCGAT 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 174
BsaWI WCCGGW 2 cut(s) 271, 346
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 209, 241, 271
Bse118I RCCGGY 2 cut(s) 271, 346
Bse1I ACTGG 3 cut(s) 123, 203, 214
Bse21I CCTNAGG 1 cut(s) 296
BseBI CCWGG 2 cut(s) 176, 266
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 170
BseLI CCNNNNNNNGG 4 cut(s) 118, 209, 241, 271
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 3 cut(s) 123, 203, 214
BseXI GCAGC 1 cut(s) 29
BshFI GGCC 1 cut(s) 110
BshNI GGYRCC 3 cut(s) 129, 215, 268
BshTI ACCGGT 2 cut(s) 271, 346
BshVI ATCGAT 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 3 cut(s) 272, 287, 347
BslI CCNNNNNNNGG 4 cut(s) 118, 209, 241, 271
BsmAI GTCTC 1 cut(s) 67
BsnI GGCC 1 cut(s) 110
BsoBI CYCGRG 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 4 cut(s) 12, 39, 261, 355
BspACI CCGC 2 cut(s) 198, 249
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 288
BspDI ATCGAT 1 cut(s) 42
BspLI GGNNCC 3 cut(s) 131, 217, 270
BspMAI CTGCAG 1 cut(s) 81
BspMI ACCTGC 1 cut(s) 227
BspOI GCTAGC 1 cut(s) 8
BspPI GGATC 3 cut(s) 47, 256, 350
BspT107I GGYRCC 3 cut(s) 129, 215, 268
BsrFI RCCGGY 2 cut(s) 271, 346
BsrI ACTGG 3 cut(s) 123, 203, 214
BssAI RCCGGY 2 cut(s) 271, 346
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 4 cut(s) 12, 39, 261, 355
Bst2UI CCWGG 2 cut(s) 176, 266
BstC8I GCNNGC 3 cut(s) 6, 108, 330
BstDEI CTNAG 1 cut(s) 296
BstEII GGTNACC 1 cut(s) 251
BstF5I GGATG 1 cut(s) 170
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 4 cut(s) 15, 42, 264, 358
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 4 cut(s) 12, 39, 261, 355
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 2 cut(s) 176, 266
BstPI GGTNACC 1 cut(s) 251
BstSCI CCNGG 3 cut(s) 174, 264, 285
BstSFI CTRYAG 2 cut(s) 77, 404
BstV1I GCAGC 1 cut(s) 29
Bsu15I ATCGAT 1 cut(s) 42
Bsu36I CCTNAGG 1 cut(s) 296
BsuRI GGCC 1 cut(s) 110
BsuTUI ATCGAT 1 cut(s) 42
BtsCI GGATG 1 cut(s) 170
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 99, 116
BveI ACCTGC 1 cut(s) 227
Cac8I GCNNGC 3 cut(s) 6, 108, 330
CaiI CAGNNNCTG 3 cut(s) 76, 85, 209
CfoI GCGC 1 cut(s) 106
Cfr10I RCCGGY 2 cut(s) 271, 346
Cfr13I GGNCC 1 cut(s) 109
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 1 cut(s) 269
CspAI ACCGGT 2 cut(s) 271, 346
CviJI RGCY 8 cut(s) 20, 85, 110, 158, 164, 294, 328, 332
CviKI_1 RGCY 8 cut(s) 20, 85, 110, 158, 164, 294, 328, 332
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 1 cut(s) 296
DpnI GATC 4 cut(s) 14, 41, 263, 357
DpnII GATC 4 cut(s) 12, 39, 261, 355
Eco81I CCTNAGG 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 111
Eco91I GGTNACC 1 cut(s) 251
EcoO65I GGTNACC 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 174, 264
FaiI YATR 4 cut(s) 138, 187, 189, 399
FauNDI CATATG 1 cut(s) 187
FblI GTMKAC 2 cut(s) 239, 276
Fnu4HI GCNGC 2 cut(s) 18, 198
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 2 cut(s) 18, 198
FspBI CTAG 3 cut(s) 5, 161, 165
GlaI GCGC 1 cut(s) 105
GluI GCNGC 2 cut(s) 18, 198
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 1 cut(s) 110
HapII CCGG 3 cut(s) 272, 287, 347
HhaI GCGC 1 cut(s) 106
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HpaII CCGG 3 cut(s) 272, 287, 347
HphI GGTGA 2 cut(s) 142, 245
Hpy166II GTNNAC 2 cut(s) 240, 277
Hpy188I TCNGA 1 cut(s) 26
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 2 cut(s) 240, 277
HpyAV CCTTC 2 cut(s) 31, 120
HpyCH4V TGCA 3 cut(s) 79, 379, 397
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 296
HspAI GCGC 1 cut(s) 104
KpnI GGTACC 1 cut(s) 272
Kzo9I GATC 4 cut(s) 12, 39, 261, 355
LmnI GCTCC 1 cut(s) 82
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 179
MaeI CTAG 3 cut(s) 5, 161, 165
MaeIII GTNAC 5 cut(s) 181, 205, 251, 338, 369
MalI GATC 4 cut(s) 14, 41, 263, 357
MboI GATC 4 cut(s) 12, 39, 261, 355
MboII GAAGA 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 1 cut(s) 351
MmeI TCCRAC 1 cut(s) 254
MnlI CCTC 4 cut(s) 68, 206, 233, 291
MspI CCGG 3 cut(s) 272, 287, 347
MspR9I CCNGG 3 cut(s) 176, 266, 287
MvaI CCWGG 2 cut(s) 176, 266
MwoI GCNNNNNNNGC 1 cut(s) 14
NciI CCSGG 1 cut(s) 287
NdeI CATATG 1 cut(s) 187
NdeII GATC 4 cut(s) 12, 39, 261, 355
NheI GCTAGC 1 cut(s) 4
NlaIV GGNNCC 3 cut(s) 131, 217, 270
NmuCI GTSAC 2 cut(s) 251, 338
PaqCI CACCTGC 1 cut(s) 227
PflMI CCANNNNNTGG 1 cut(s) 209
PfoI TCCNGGA 1 cut(s) 285
PinAI ACCGGT 2 cut(s) 271, 346
PkrI GCNGC 2 cut(s) 19, 199
Psp6I CCWGG 2 cut(s) 174, 264
PspEI GGTNACC 1 cut(s) 251
PspGI CCWGG 2 cut(s) 174, 264
PspN4I GGNNCC 3 cut(s) 131, 217, 270
PspPI GGNCC 1 cut(s) 109
PstI CTGCAG 1 cut(s) 81
PstNI CAGNNNCTG 3 cut(s) 76, 85, 209
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
SatI GCNGC 2 cut(s) 18, 198
Sau3AI GATC 4 cut(s) 12, 39, 261, 355
Sau96I GGNCC 1 cut(s) 109
ScrFI CCNGG 3 cut(s) 176, 266, 287
SduI GDGCHC 1 cut(s) 118
SetI ASST 8 cut(s) 60, 87, 166, 180, 221, 258, 270, 334
SfaNI GCATC 1 cut(s) 179
SfcI CTRYAG 2 cut(s) 77, 404
Sse9I AATT 1 cut(s) 351
SsiI CCGC 2 cut(s) 198, 249
SspMI CTAG 3 cut(s) 5, 161, 165
StyD4I CCNGG 3 cut(s) 174, 264, 285
TaqI TCGA 1 cut(s) 42
TasI AATT 1 cut(s) 351
TauI GCSGC 1 cut(s) 200
TscAI CASTG 2 cut(s) 106, 123
TseFI GTSAC 2 cut(s) 251, 338
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 2 cut(s) 251, 338
TspDTI ATGAA 2 cut(s) 108, 156
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 2 cut(s) 106, 123
Van91I CCANNNNNTGG 1 cut(s) 209
XmiI GTMKAC 2 cut(s) 239, 276
XspI CTAG 3 cut(s) 5, 161, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.