Rroxscaffold_4G00331340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000633
Physical Location & Seq
Reverse (-)
65271081 .. 65272412
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00331340.1

Sequence Viewer

Length: 303 bp
ATGGGCCGGGTTCATGACCCACCATGGCGGGACTCGTATGGGATGTCACCTCGTACACCTGGGGGCGGGGCAAGGCGGCACAGCCCACCTAATTACATAAACAAGAGAGCTGATATGGCATCGAAGAACAACCTATGTCCCACATCGAATATAGGGGAGACTCCTTCCCCATGCTCGAGTATAAGGGCATTAGCACAACTACCTTTGACGGGTGGTCCGGTTGGTGGCGGCGACGACATCGGCTCGGGCGTTGAAGGAGGAGTGCCGGACCGGTCCAGGGCACGCTTTCGGGTTTCTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.54

Weight (kDa)

10.37

Isoelectric Point (pI)

71.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 28, 66, 76, 228
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 4 cut(s) 65, 209, 224, 277
AgeI ACCGGT 1 cut(s) 270
AgsI TTSAA 1 cut(s) 254
AhdI GACNNNNNGTC 1 cut(s) 213
AjnI CCWGG 2 cut(s) 58, 275
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 152
Ama87I CYCGRG 2 cut(s) 175, 244
AoxI GGCC 1 cut(s) 4
AsiGI ACCGGT 1 cut(s) 270
AspS9I GGNCC 4 cut(s) 4, 215, 268, 273
AsuC2I CCSGG 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 39
AvaI CYCGRG 2 cut(s) 175, 244
AvaII GGWCC 3 cut(s) 215, 268, 273
BaeGI GKGCMC 1 cut(s) 283
BciT130I CCWGG 2 cut(s) 60, 277
BcnI CCSGG 1 cut(s) 8
BcoDI GTCTC 1 cut(s) 152
BisI GCNGC 2 cut(s) 77, 229
BlsI GCNGC 2 cut(s) 78, 230
Bme1390I CCNGG 3 cut(s) 8, 60, 277
Bme18I GGWCC 3 cut(s) 215, 268, 273
BmeRI GACNNNNNGTC 1 cut(s) 213
BmeT110I CYCGRG 2 cut(s) 175, 244
BmgT120I GGNCC 4 cut(s) 4, 215, 268, 273
BmrFI CCNGG 3 cut(s) 8, 60, 277
BmsI GCATC 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 8
BsaJI CCNNGG 3 cut(s) 23, 59, 276
BsaWI WCCGGW 2 cut(s) 217, 270
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 209, 224, 277
Bse118I RCCGGY 1 cut(s) 270
BseBI CCWGG 2 cut(s) 60, 277
BseDI CCNNGG 3 cut(s) 23, 59, 276
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 4 cut(s) 65, 209, 224, 277
BseRI GAGGAG 1 cut(s) 273
BseSI GKGCMC 1 cut(s) 283
BshFI GGCC 1 cut(s) 6
BshTI ACCGGT 1 cut(s) 270
BsiHKCI CYCGRG 2 cut(s) 175, 244
BsiSI CCGG 4 cut(s) 7, 218, 266, 271
BslFI GGGAC 2 cut(s) 44, 123
BslI CCNNNNNNNGG 4 cut(s) 65, 209, 224, 277
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 2 cut(s) 44, 123
BsnI GGCC 1 cut(s) 6
BsoBI CYCGRG 2 cut(s) 175, 244
Bsp1286I GDGCHC 1 cut(s) 283
Bsp19I CCATGG 1 cut(s) 23
BspACI CCGC 4 cut(s) 28, 66, 76, 228
BspANI GGCC 1 cut(s) 6
BspHI TCATGA 1 cut(s) 13
BsrFI RCCGGY 1 cut(s) 270
BssAI RCCGGY 1 cut(s) 270
BssECI CCNNGG 3 cut(s) 23, 59, 276
BssT1I CCWWGG 1 cut(s) 23
Bst2UI CCWGG 2 cut(s) 60, 277
BstC8I GCNNGC 1 cut(s) 283
BstDSI CCRYGG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 48
BstMAI GTCTC 1 cut(s) 152
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNI CCWGG 2 cut(s) 60, 277
BstSCI CCNGG 3 cut(s) 6, 58, 275
BstSLI GKGCMC 1 cut(s) 283
BsuRI GGCC 1 cut(s) 6
BtgI CCRYGG 1 cut(s) 23
BtsCI GGATG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 283
CciI TCATGA 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 270
Cfr13I GGNCC 4 cut(s) 4, 215, 268, 273
CpoI CGGWCCG 1 cut(s) 268
Csp6I GTAC 1 cut(s) 54
CspAI ACCGGT 1 cut(s) 270
CspI CGGWCCG 1 cut(s) 268
CviAII CATG 3 cut(s) 14, 24, 171
CviJI RGCY 4 cut(s) 6, 84, 110, 243
CviKI_1 RGCY 4 cut(s) 6, 84, 110, 243
CviQI GTAC 1 cut(s) 54
DriI GACNNNNNGTC 1 cut(s) 213
Eam1105I GACNNNNNGTC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 23
Eco47I GGWCC 3 cut(s) 215, 268, 273
Eco88I CYCGRG 2 cut(s) 175, 244
EcoRII CCWGG 2 cut(s) 58, 275
EcoT14I CCWWGG 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 23
FaeI CATG 3 cut(s) 17, 27, 174
FaiI YATR 9 cut(s) 15, 25, 39, 98, 116, 136, 152, 172, 182
FaqI GGGAC 2 cut(s) 44, 123
FatI CATG 3 cut(s) 13, 23, 170
FauI CCCGC 2 cut(s) 21, 59
Fnu4HI GCNGC 2 cut(s) 77, 229
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 2 cut(s) 77, 229
GluI GCNGC 2 cut(s) 77, 229
HaeIII GGCC 1 cut(s) 6
HapII CCGG 4 cut(s) 7, 218, 266, 271
Hin1II CATG 3 cut(s) 17, 27, 174
HinfI GANTC 2 cut(s) 32, 160
HpaII CCGG 4 cut(s) 7, 218, 266, 271
HphI GGTGA 1 cut(s) 39
Hpy166II GTNNAC 1 cut(s) 56
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 1 cut(s) 56
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 2 cut(s) 174, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
Hsp92II CATG 3 cut(s) 17, 27, 174
LpnPI CCDG 8 cut(s) 20, 45, 72, 231, 262, 279, 284, 289
LweI GCATC 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 45
MboII GAAGA 1 cut(s) 136
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 1 cut(s) 91
MlyI GAGTC 2 cut(s) 26, 154
MnlI CCTC 2 cut(s) 60, 251
MspI CCGG 4 cut(s) 7, 218, 266, 271
MspR9I CCNGG 3 cut(s) 8, 60, 277
MvaI CCWGG 2 cut(s) 60, 277
MwoI GCNNNNNNNGC 1 cut(s) 116
NciI CCSGG 1 cut(s) 8
NcoI CCATGG 1 cut(s) 23
NlaIII CATG 3 cut(s) 17, 27, 174
NmuCI GTSAC 1 cut(s) 45
PaeR7I CTCGAG 1 cut(s) 175
PagI TCATGA 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PinAI ACCGGT 1 cut(s) 270
PkrI GCNGC 2 cut(s) 78, 230
PleI GAGTC 2 cut(s) 26, 154
PpsI GAGTC 2 cut(s) 26, 154
Psp6I CCWGG 2 cut(s) 58, 275
PspGI CCWGG 2 cut(s) 58, 275
PspPI GGNCC 4 cut(s) 4, 215, 268, 273
PspXI VCTCGAGB 1 cut(s) 175
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
Rsr2I CGGWCCG 1 cut(s) 268
RsrII CGGWCCG 1 cut(s) 268
SatI GCNGC 2 cut(s) 77, 229
Sau96I GGNCC 4 cut(s) 4, 215, 268, 273
SchI GAGTC 2 cut(s) 26, 154
ScrFI CCNGG 3 cut(s) 8, 60, 277
SduI GDGCHC 1 cut(s) 283
SetI ASST 6 cut(s) 52, 61, 91, 112, 135, 205
SfaNI GCATC 1 cut(s) 128
Sfr274I CTCGAG 1 cut(s) 175
SinI GGWCC 3 cut(s) 215, 268, 273
SlaI CTCGAG 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
Sse9I AATT 1 cut(s) 91
SsiI CCGC 4 cut(s) 28, 66, 76, 228
StyD4I CCNGG 3 cut(s) 6, 58, 275
StyI CCWWGG 1 cut(s) 23
TaqI TCGA 3 cut(s) 122, 146, 176
TasI AATT 1 cut(s) 91
TauI GCSGC 2 cut(s) 79, 231
TseFI GTSAC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 45
VpaK11BI GGWCC 3 cut(s) 215, 268, 273
XhoI CTCGAG 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.