Rmu_ssc0000381.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000381.1
OG0000633
Physical Location & Seq
Forward (+)
88682 .. 89286
605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000381.1_g000017.1.cds

Sequence Viewer

Length: 462 bp
atgcgagctgagatcgcagccttcagggagcagtccaggatcgatcgggaacaacggagtaccgatagggaaacaaaccgcctcacgcaacagagaatgcaggatttggaagatgaaaacacggcgctggcccgagcactagacaggaggcaccagcacaacgaggcacttactcaggccctggctagagcgtcccagctaacagacctgaacgctgccccgataacaggaaacaccaacaccgcaccagcaccacccacggagggcagccagaggttaatccaggtaccggtagacttattcccagaaagcttaaggcacctaccaccaccaccgttaccacagccagttcacagtatcacgccggttaggggagccattcgagcgaatgcatcgaaaccactgaaaattgactatacgggagttggagatccctaccaacatctacaggctttccgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.14

Weight (kDa)

8.28

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 286
AccB1I GGYRCC 3 cut(s) 150, 286, 318
AccI GTMKAC 1 cut(s) 294
AciI CCGC 2 cut(s) 79, 243
AclWI GGATC 2 cut(s) 47, 425
AcuI CTGAAG 1 cut(s) 7
AfaI GTAC 2 cut(s) 61, 288
AfiI CCNNNNNNNGG 4 cut(s) 227, 263, 289, 371
AflII CTTAAG 1 cut(s) 313
AgeI ACCGGT 1 cut(s) 289
AjnI CCWGG 3 cut(s) 35, 180, 282
AluBI AGCT 3 cut(s) 8, 199, 312
AluI AGCT 3 cut(s) 8, 199, 312
Alw21I GWGCWC 1 cut(s) 139
AlwI GGATC 2 cut(s) 47, 425
AlwNI CAGNNNCTG 1 cut(s) 181
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 2 cut(s) 129, 177
ApeKI GCWGC 3 cut(s) 17, 215, 267
AsiGI ACCGGT 1 cut(s) 289
Asp718I GGTACC 1 cut(s) 286
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 2 cut(s) 130, 178
AvaI CYCGRG 1 cut(s) 132
BanI GGYRCC 3 cut(s) 150, 286, 318
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 3 cut(s) 29, 202, 279
BceAI ACGGC 1 cut(s) 138
BciT130I CCWGG 3 cut(s) 37, 182, 284
BfaI CTAG 2 cut(s) 140, 186
BfmI CTRYAG 1 cut(s) 446
BfoI RGCGCY 1 cut(s) 128
BfrI CTTAAG 1 cut(s) 313
BisI GCNGC 3 cut(s) 18, 216, 268
BlsI GCNGC 3 cut(s) 19, 217, 269
Bme1390I CCNGG 3 cut(s) 37, 182, 284
BmeT110I CYCGRG 1 cut(s) 132
BmgT120I GGNCC 2 cut(s) 130, 178
BmiI GGNNCC 4 cut(s) 152, 288, 320, 376
BmrFI CCNGG 3 cut(s) 37, 182, 284
BmsI GCATC 1 cut(s) 401
Bsa29I ATCGAT 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 180, 258
BsaWI WCCGGW 1 cut(s) 289
Bsc4I CCNNNNNNNGG 4 cut(s) 227, 263, 289, 371
Bse118I RCCGGY 2 cut(s) 289, 364
Bse1I ACTGG 1 cut(s) 347
BseBI CCWGG 3 cut(s) 37, 182, 284
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 180, 258
BseLI CCNNNNNNNGG 4 cut(s) 227, 263, 289, 371
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 347
BseXI GCAGC 3 cut(s) 29, 202, 279
BseYI CCCAGC 1 cut(s) 195
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 2 cut(s) 131, 179
BshNI GGYRCC 3 cut(s) 150, 286, 318
BshTI ACCGGT 1 cut(s) 289
BshVI ATCGAT 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 139
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 2 cut(s) 290, 365
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 4 cut(s) 227, 263, 289, 371
BsmFI GGGAC 1 cut(s) 178
BsmI GAATGC 2 cut(s) 102, 394
BsnI GGCC 2 cut(s) 131, 179
BsoBI CYCGRG 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 4 cut(s) 12, 39, 43, 430
BspACI CCGC 2 cut(s) 79, 243
BspANI GGCC 2 cut(s) 131, 179
BspCNI CTCAG 1 cut(s) 187
BspDI ATCGAT 1 cut(s) 42
BspLI GGNNCC 4 cut(s) 152, 288, 320, 376
BspPI GGATC 2 cut(s) 47, 425
BspT107I GGYRCC 3 cut(s) 150, 286, 318
BspTI CTTAAG 1 cut(s) 313
BsrFI RCCGGY 2 cut(s) 289, 364
BsrI ACTGG 1 cut(s) 347
BssAI RCCGGY 2 cut(s) 289, 364
BssECI CCNNGG 2 cut(s) 180, 258
BssMI GATC 4 cut(s) 12, 39, 43, 430
Bst2UI CCWGG 3 cut(s) 37, 182, 284
Bst4CI ACNGT 2 cut(s) 336, 356
BstAFI CTTAAG 1 cut(s) 313
BstC8I GCNNGC 2 cut(s) 6, 129
BstDEI CTNAG 2 cut(s) 9, 174
BstDSI CCRYGG 1 cut(s) 258
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 4 cut(s) 15, 42, 46, 433
BstMBI GATC 4 cut(s) 12, 39, 43, 430
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 14, 383
BstNI CCWGG 3 cut(s) 37, 182, 284
BstSCI CCNGG 3 cut(s) 35, 180, 282
BstSFI CTRYAG 1 cut(s) 446
BstV1I GCAGC 3 cut(s) 29, 202, 279
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 2 cut(s) 131, 179
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 401
Cac8I GCNNGC 2 cut(s) 6, 129
CaiI CAGNNNCTG 1 cut(s) 181
CfoI GCGC 1 cut(s) 127
Cfr10I RCCGGY 2 cut(s) 289, 364
Cfr13I GGNCC 2 cut(s) 130, 178
ClaI ATCGAT 1 cut(s) 42
CseI GACGC 1 cut(s) 180
Csp6I GTAC 2 cut(s) 60, 287
CspAI ACCGGT 1 cut(s) 289
CviQI GTAC 2 cut(s) 60, 287
DdeI CTNAG 2 cut(s) 9, 174
DpnI GATC 4 cut(s) 14, 41, 45, 432
DpnII GATC 4 cut(s) 12, 39, 43, 430
Eco57I CTGAAG 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 3 cut(s) 35, 180, 282
EcoT22I ATGCAT 1 cut(s) 394
FaiI YATR 1 cut(s) 417
FaqI GGGAC 1 cut(s) 178
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 3 cut(s) 18, 216, 268
Fsp4HI GCNGC 3 cut(s) 18, 216, 268
FspBI CTAG 2 cut(s) 140, 186
GlaI GCGC 1 cut(s) 126
GluI GCNGC 3 cut(s) 18, 216, 268
GsaI CCCAGC 1 cut(s) 199
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 2 cut(s) 131, 179
HapII CCGG 2 cut(s) 290, 365
HgaI GACGC 1 cut(s) 180
HhaI GCGC 1 cut(s) 127
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HindIII AAGCTT 1 cut(s) 310
HpaII CCGG 2 cut(s) 290, 365
Hpy166II GTNNAC 2 cut(s) 295, 352
Hpy188I TCNGA 1 cut(s) 458
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 2 cut(s) 295, 352
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 336, 356
HpyCH4V TGCA 2 cut(s) 100, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 383
HpyF3I CTNAG 2 cut(s) 9, 174
HspAI GCGC 1 cut(s) 125
KpnI GGTACC 1 cut(s) 290
Kzo9I GATC 4 cut(s) 12, 39, 43, 430
LmnI GCTCC 2 cut(s) 28, 374
Lsp1109I GCAGC 3 cut(s) 29, 202, 279
LweI GCATC 1 cut(s) 401
MaeI CTAG 2 cut(s) 140, 186
MaeIII GTNAC 1 cut(s) 336
MalI GATC 4 cut(s) 14, 41, 45, 432
MboI GATC 4 cut(s) 12, 39, 43, 430
MboII GAAGA 1 cut(s) 122
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 1 cut(s) 408
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 5 cut(s) 92, 141, 157, 256, 267
Mph1103I ATGCAT 1 cut(s) 394
MseI TTAA 2 cut(s) 278, 314
MspCI CTTAAG 1 cut(s) 313
MspI CCGG 2 cut(s) 290, 365
MspR9I CCNGG 3 cut(s) 37, 182, 284
Mva1269I GAATGC 2 cut(s) 102, 394
MvaI CCWGG 3 cut(s) 37, 182, 284
MwoI GCNNNNNNNGC 2 cut(s) 14, 383
NdeII GATC 4 cut(s) 12, 39, 43, 430
NlaIV GGNNCC 4 cut(s) 152, 288, 320, 376
NsiI ATGCAT 1 cut(s) 394
PctI GAATGC 2 cut(s) 102, 394
PfoI TCCNGGA 1 cut(s) 35
PinAI ACCGGT 1 cut(s) 289
PkrI GCNGC 3 cut(s) 19, 217, 269
Ple19I CGATCG 1 cut(s) 46
Psp6I CCWGG 3 cut(s) 35, 180, 282
PspFI CCCAGC 1 cut(s) 195
PspGI CCWGG 3 cut(s) 35, 180, 282
PspN4I GGNNCC 4 cut(s) 152, 288, 320, 376
PspPI GGNCC 2 cut(s) 130, 178
PstNI CAGNNNCTG 1 cut(s) 181
PsuI RGATCY 1 cut(s) 430
PvuI CGATCG 1 cut(s) 46
RsaI GTAC 2 cut(s) 61, 288
RsaNI GTAC 2 cut(s) 60, 287
SaqAI TTAA 2 cut(s) 278, 314
SatI GCNGC 3 cut(s) 18, 216, 268
Sau3AI GATC 4 cut(s) 12, 39, 43, 430
Sau96I GGNCC 2 cut(s) 130, 178
ScrFI CCNGG 3 cut(s) 37, 182, 284
SduI GDGCHC 1 cut(s) 139
SetI ASST 7 cut(s) 10, 201, 210, 278, 288, 314, 324
SfaNI GCATC 1 cut(s) 401
SfcI CTRYAG 1 cut(s) 446
SmlI CTYRAG 1 cut(s) 313
SmoI CTYRAG 1 cut(s) 313
Sse9I AATT 1 cut(s) 408
SsiI CCGC 2 cut(s) 79, 243
SspMI CTAG 2 cut(s) 140, 186
StyD4I CCNGG 3 cut(s) 35, 180, 282
TaaI ACNGT 2 cut(s) 336, 356
TaqI TCGA 3 cut(s) 42, 382, 395
TasI AATT 1 cut(s) 408
Tru1I TTAA 2 cut(s) 278, 314
Tru9I TTAA 2 cut(s) 278, 314
TscAI CASTG 1 cut(s) 408
TseI GCWGC 3 cut(s) 17, 215, 267
TspDTI ATGAA 1 cut(s) 129
TspGWI ACGGA 2 cut(s) 70, 275
TspRI CASTG 1 cut(s) 408
Vha464I CTTAAG 1 cut(s) 313
XmiI GTMKAC 1 cut(s) 294
XspI CTAG 2 cut(s) 140, 186
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.