Rmu_sc0000539.1_g000053

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000539.1
OG0000633
Physical Location & Seq
Reverse (-)
244199 .. 247239
3041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000539.1_g000053.1.cds

Sequence Viewer

Length: 501 bp
atgtcatgctcgggccgtgccgggctgggccaatgggccaatattcttaggcccagcccgaccagttattctaacgtgctcgggtcgtgccgggctactaacgggcttgggccgtgccgagccacttttaagcgtgccgtgctcgtgcttagtggcccgtttgccacctctaagagagagagtcatcggagacttcgccggaaccaggtgattgaccgctggagtccggtggtcagattctggcaacctgtcaccggaatccggcgtctgattttattggcccccaataattttatcattggcccccgcggagggagttgtccagcgaacctgagacggagacatggccagaggagttgtcgaggaacaggagagagttgcgaatccgcgtcgtgtagcttttgggggtgggtagagaggagagaggccattactctgccgagcgtgactgacgtcattgactccagtgatgaatctgataactctgacgaggtggagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.35

Weight (kDa)

10.27

Isoelectric Point (pI)

79.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 456
AccII CGCG 2 cut(s) 309, 389
AciI CCGC 4 cut(s) 217, 307, 309, 387
AcoI YGGCCR 1 cut(s) 346
AcyI GRCGYC 2 cut(s) 265, 453
AfiI CCNNNNNNNGG 5 cut(s) 205, 254, 261, 311, 312
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 1 cut(s) 399
AluI AGCT 1 cut(s) 399
Alw21I GWGCWC 2 cut(s) 81, 144
Alw26I GTCTC 3 cut(s) 184, 328, 334
AlwNI CAGNNNCTG 1 cut(s) 240
Ama87I CYCGRG 2 cut(s) 10, 80
AspS9I GGNCC 8 cut(s) 13, 28, 36, 51, 110, 155, 280, 302
AsuC2I CCSGG 2 cut(s) 22, 92
AsuHPI GGTGA 2 cut(s) 220, 244
AvaI CYCGRG 2 cut(s) 10, 80
BalI TGGCCA 1 cut(s) 348
BauI CACGAG 1 cut(s) 143
Bbv12I GWGCWC 2 cut(s) 81, 144
BceAI ACGGC 2 cut(s) 97, 122
BciT130I CCWGG 1 cut(s) 206
BcnI CCSGG 2 cut(s) 22, 92
BcoDI GTCTC 3 cut(s) 184, 328, 334
Bme1390I CCNGG 3 cut(s) 22, 92, 206
BmeT110I CYCGRG 2 cut(s) 10, 80
BmgT120I GGNCC 8 cut(s) 13, 28, 36, 51, 110, 155, 280, 302
BmiI GGNNCC 3 cut(s) 203, 282, 304
BmrFI CCNGG 3 cut(s) 22, 92, 206
BoxI GACNNNNGTC 1 cut(s) 452
BpmI CTGGAG 2 cut(s) 241, 448
BpuMI CCSGG 2 cut(s) 22, 92
BsaHI GRCGYC 2 cut(s) 265, 453
BsaJI CCNNGG 1 cut(s) 307
BsaWI WCCGGW 2 cut(s) 226, 254
Bsc4I CCNNNNNNNGG 5 cut(s) 205, 254, 261, 311, 312
Bse1I ACTGG 2 cut(s) 63, 465
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 307
BseLI CCNNNNNNNGG 5 cut(s) 205, 254, 261, 311, 312
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 2 cut(s) 63, 465
BseRI GAGGAG 2 cut(s) 367, 433
BseYI CCCAGC 2 cut(s) 25, 53
Bsh1236I CGCG 2 cut(s) 309, 389
BsiHKAI GWGCWC 2 cut(s) 81, 144
BsiHKCI CYCGRG 2 cut(s) 10, 80
BsiSI CCGG 6 cut(s) 21, 91, 199, 227, 255, 262
BslI CCNNNNNNNGG 5 cut(s) 205, 254, 261, 311, 312
BsmAI GTCTC 3 cut(s) 184, 328, 334
BsmBI CGTCTC 1 cut(s) 328
BsoBI CYCGRG 2 cut(s) 10, 80
Bsp1286I GDGCHC 2 cut(s) 81, 144
BspACI CCGC 4 cut(s) 217, 307, 309, 387
BspCNI CTCAG 1 cut(s) 324
BspFNI CGCG 2 cut(s) 309, 389
BspLI GGNNCC 3 cut(s) 203, 282, 304
BsrI ACTGG 2 cut(s) 63, 465
BssECI CCNNGG 1 cut(s) 307
BssNI GRCGYC 2 cut(s) 265, 453
BssSI CACGAG 1 cut(s) 143
Bst2BI CACGAG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 206
BstACI GRCGYC 2 cut(s) 265, 453
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 4 cut(s) 47, 149, 171, 332
BstDSI CCRYGG 1 cut(s) 307
BstFNI CGCG 2 cut(s) 309, 389
BstMAI GTCTC 3 cut(s) 184, 328, 334
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstNI CCWGG 1 cut(s) 206
BstPAI GACNNNNGTC 1 cut(s) 452
BstSCI CCNGG 3 cut(s) 20, 90, 204
BstUI CGCG 2 cut(s) 309, 389
BtgI CCRYGG 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 472
Cac8I GCNNGC 1 cut(s) 135
CaiI CAGNNNCTG 1 cut(s) 240
Cfr13I GGNCC 8 cut(s) 13, 28, 36, 51, 110, 155, 280, 302
Cfr42I CCGCGG 1 cut(s) 310
CseI GACGC 2 cut(s) 254, 378
CsiI ACCWGGT 1 cut(s) 204
CviAII CATG 2 cut(s) 6, 344
DdeI CTNAG 4 cut(s) 47, 149, 171, 332
EaeI YGGCCR 1 cut(s) 346
Eco88I CYCGRG 2 cut(s) 10, 80
EcoRII CCWGG 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 328
FaeI CATG 2 cut(s) 9, 347
FaiI YATR 2 cut(s) 7, 345
FatI CATG 2 cut(s) 5, 343
FauI CCCGC 1 cut(s) 314
GsaI CCCAGC 2 cut(s) 29, 57
GsuI CTGGAG 2 cut(s) 241, 448
HapII CCGG 6 cut(s) 21, 91, 199, 227, 255, 262
HgaI GACGC 2 cut(s) 254, 378
Hin1I GRCGYC 2 cut(s) 265, 453
Hin1II CATG 2 cut(s) 9, 347
HinfI GANTC 7 cut(s) 181, 223, 237, 258, 383, 461, 473
HpaII CCGG 6 cut(s) 21, 91, 199, 227, 255, 262
HphI GGTGA 2 cut(s) 220, 244
Hpy188I TCNGA 5 cut(s) 189, 236, 270, 478, 487
Hpy99I CGWCG 1 cut(s) 394
HpyCH4IV ACGT 2 cut(s) 75, 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 4 cut(s) 47, 149, 171, 332
HpySE526I ACGT 2 cut(s) 75, 453
Hsp92I GRCGYC 2 cut(s) 265, 453
Hsp92II CATG 2 cut(s) 9, 347
KspI CCGCGG 1 cut(s) 310
MabI ACCWGGT 1 cut(s) 204
MaeII ACGT 2 cut(s) 75, 453
MaeIII GTNAC 2 cut(s) 250, 445
MhlI GDGCHC 2 cut(s) 81, 144
MlsI TGGCCA 1 cut(s) 348
MluCI AATT 1 cut(s) 289
MluNI TGGCCA 1 cut(s) 348
MlyI GAGTC 3 cut(s) 190, 232, 455
MnlI CCTC 7 cut(s) 178, 305, 345, 356, 411, 418, 484
Mox20I TGGCCA 1 cut(s) 348
MscI TGGCCA 1 cut(s) 348
MseI TTAA 1 cut(s) 129
Msp20I TGGCCA 1 cut(s) 348
MspA1I CMGCKG 2 cut(s) 219, 309
MspI CCGG 6 cut(s) 21, 91, 199, 227, 255, 262
MspR9I CCNGG 3 cut(s) 22, 92, 206
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 2 cut(s) 309, 389
MwoI GCNNNNNNNGC 1 cut(s) 139
NciI CCSGG 2 cut(s) 22, 92
NlaIII CATG 2 cut(s) 9, 347
NlaIV GGNNCC 3 cut(s) 203, 282, 304
NmeAIII GCCGAG 2 cut(s) 143, 465
NmuCI GTSAC 2 cut(s) 250, 445
PfeI GAWTC 4 cut(s) 237, 258, 383, 473
PleI GAGTC 3 cut(s) 189, 231, 455
PpsI GAGTC 3 cut(s) 189, 231, 455
PshAI GACNNNNGTC 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 204
PspFI CCCAGC 2 cut(s) 25, 53
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 3 cut(s) 203, 282, 304
PspPI GGNCC 8 cut(s) 13, 28, 36, 51, 110, 155, 280, 302
PstNI CAGNNNCTG 1 cut(s) 240
SacII CCGCGG 1 cut(s) 310
SaqAI TTAA 1 cut(s) 129
Sau96I GGNCC 8 cut(s) 13, 28, 36, 51, 110, 155, 280, 302
SchI GAGTC 3 cut(s) 190, 232, 455
ScrFI CCNGG 3 cut(s) 22, 92, 206
SduI GDGCHC 2 cut(s) 81, 144
SetI ASST 8 cut(s) 78, 170, 210, 250, 333, 401, 456, 495
SexAI ACCWGGT 1 cut(s) 204
Sfr303I CCGCGG 1 cut(s) 310
SgrBI CCGCGG 1 cut(s) 310
Sse9I AATT 1 cut(s) 289
SsiI CCGC 4 cut(s) 217, 307, 309, 387
SspI AATATT 1 cut(s) 43
StyD4I CCNGG 3 cut(s) 20, 90, 204
TaiI ACGT 2 cut(s) 78, 456
TaqI TCGA 1 cut(s) 361
TasI AATT 1 cut(s) 289
TfiI GAWTC 4 cut(s) 237, 258, 383, 473
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 472
TseFI GTSAC 2 cut(s) 250, 445
Tsp45I GTSAC 2 cut(s) 250, 445
TspDTI ATGAA 1 cut(s) 486
TspGWI ACGGA 1 cut(s) 352
TspRI CASTG 1 cut(s) 472
ZraI GACGTC 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.