Rmu_sc0011416.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011416.1
OG0000633
Physical Location & Seq
Forward (+)
1 .. 2246
2246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011416.1_g000001.1.cds

Sequence Viewer

Length: 710 bp
ccccatcggtactcccagatactacgccatgggccgggttcacgccccaccatggcgggcctcacatgggatgccaccctgggcacccagggccaggggcaaggccagcacaacccatctatttaccccacaagagggctgatatggcctcagaagaacctgtgtcccacatcgaggataggggagactcccttcccatgcttgagtataaagacattagcacaaccaccttttacagaaagccaccagaaacattggcgcgccagataggggtactggacatgaatgagccagaaatgacaggagaggggagaagtgtcgcccgagcactgattttctctcctggaacttcgtcagcagaggcgccagctgttcagggggaaatccatggtctcggatccttggacccgataatcccggatcaggtgactccggtatcggaattagagtctatgcgagctgagatcgcagccttcaaggagcaatccagaatcgatcgggaacaacggagtaccgatagggaaacaaaccgcctcacgcaacagagaatgcaggatttggaagatgaaaacacggcgctgacccgagcactagaccggaggcaccagcacaacgaggcactcactcaggcccgtagagtctatgcgagctgtgatcgcagccttcagggaacagtccagaatcgatcgggaacaacggaataccgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

26.08

Weight (kDa)

5.69

Isoelectric Point (pI)

56.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 83, 363, 602
AccII CGCG 1 cut(s) 261
AciI CCGC 2 cut(s) 56, 531
AclWI GGATC 3 cut(s) 392, 405, 428
AcuI CTGAAG 1 cut(s) 649
AcyI GRCGYC 1 cut(s) 364
AfaI GTAC 3 cut(s) 11, 275, 513
AfiI CCNNNNNNNGG 9 cut(s) 34, 52, 67, 94, 134, 135, 174, 270, 423
AgsI TTSAA 1 cut(s) 477
AjnI CCWGG 4 cut(s) 78, 87, 93, 342
AluBI AGCT 3 cut(s) 370, 460, 650
AluI AGCT 3 cut(s) 370, 460, 650
Alw21I GWGCWC 2 cut(s) 330, 591
Alw26I GTCTC 2 cut(s) 179, 397
AlwI GGATC 3 cut(s) 392, 405, 428
Ama87I CYCGRG 2 cut(s) 323, 584
AoxI GGCC 6 cut(s) 32, 58, 91, 103, 146, 629
ApeKI GCWGC 2 cut(s) 469, 659
AscI GGCGCGCC 1 cut(s) 259
AspLEI GCGC 4 cut(s) 261, 263, 366, 579
AspS9I GGNCC 5 cut(s) 32, 58, 91, 405, 630
AsuC2I CCSGG 2 cut(s) 36, 418
AsuHPI GGTGA 1 cut(s) 438
AvaI CYCGRG 2 cut(s) 323, 584
AvaII GGWCC 1 cut(s) 405
BaeGI GKGCMC 1 cut(s) 86
BaeI ACNNNNGTAYC 2 cut(s) 419, 452
BamHI GGATCC 1 cut(s) 397
BanI GGYRCC 3 cut(s) 83, 363, 602
Bbv12I GWGCWC 2 cut(s) 330, 591
BbvI GCAGC 2 cut(s) 481, 671
BccI CCATC 2 cut(s) 12, 124
BceAI ACGGC 1 cut(s) 590
BciT130I CCWGG 4 cut(s) 80, 89, 95, 344
BcnI CCSGG 2 cut(s) 36, 418
BcoDI GTCTC 2 cut(s) 179, 397
BfaI CTAG 1 cut(s) 592
BfoI RGCGCY 2 cut(s) 367, 580
BisI GCNGC 2 cut(s) 470, 660
BlsI GCNGC 2 cut(s) 471, 661
Bme1390I CCNGG 6 cut(s) 36, 80, 89, 95, 344, 418
Bme18I GGWCC 1 cut(s) 405
BmeT110I CYCGRG 2 cut(s) 323, 584
BmgT120I GGNCC 5 cut(s) 32, 58, 91, 405, 630
BmiI GGNNCC 5 cut(s) 85, 365, 399, 407, 604
BmrFI CCNGG 6 cut(s) 36, 80, 89, 95, 344, 418
BmsI GCATC 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 223
BpuMI CCSGG 2 cut(s) 36, 418
Bsa29I ATCGAT 2 cut(s) 494, 684
BsaHI GRCGYC 1 cut(s) 364
BsaI GGTCTC 1 cut(s) 397
BsaJI CCNNGG 9 cut(s) 28, 51, 78, 79, 87, 88, 94, 387, 401
BsaWI WCCGGW 2 cut(s) 432, 596
Bsc4I CCNNNNNNNGG 9 cut(s) 34, 52, 67, 94, 134, 135, 174, 270, 423
Bse1I ACTGG 1 cut(s) 281
BseBI CCWGG 4 cut(s) 80, 89, 95, 344
BseCI ATCGAT 2 cut(s) 494, 684
BseDI CCNNGG 9 cut(s) 28, 51, 78, 79, 87, 88, 94, 387, 401
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 9 cut(s) 34, 52, 67, 94, 134, 135, 174, 270, 423
BseMII CTCAG 3 cut(s) 164, 452, 640
BseNI ACTGG 1 cut(s) 281
BsePI GCGCGC 1 cut(s) 259
BseSI GKGCMC 1 cut(s) 86
BseXI GCAGC 2 cut(s) 481, 671
Bsh1236I CGCG 1 cut(s) 261
Bsh1285I CGRYCG 2 cut(s) 498, 688
BshFI GGCC 6 cut(s) 34, 60, 93, 105, 148, 631
BshNI GGYRCC 3 cut(s) 83, 363, 602
BshVI ATCGAT 2 cut(s) 494, 684
BsiEI CGRYCG 2 cut(s) 498, 688
BsiHKAI GWGCWC 2 cut(s) 330, 591
BsiHKCI CYCGRG 2 cut(s) 323, 584
BsiSI CCGG 4 cut(s) 35, 418, 433, 597
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 9 cut(s) 34, 52, 67, 94, 134, 135, 174, 270, 423
BsmAI GTCTC 2 cut(s) 179, 397
BsmFI GGGAC 1 cut(s) 150
BsmI GAATGC 1 cut(s) 554
BsnI GGCC 6 cut(s) 34, 60, 93, 105, 148, 631
Bso31I GGTCTC 1 cut(s) 397
BsoBI CYCGRG 2 cut(s) 323, 584
Bsp1286I GDGCHC 3 cut(s) 86, 330, 591
Bsp143I GATC 6 cut(s) 397, 420, 464, 495, 654, 685
Bsp19I CCATGG 3 cut(s) 28, 51, 387
BspACI CCGC 2 cut(s) 56, 531
BspANI GGCC 6 cut(s) 34, 60, 93, 105, 148, 631
BspCNI CTCAG 3 cut(s) 163, 453, 639
BspDI ATCGAT 2 cut(s) 494, 684
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 5 cut(s) 85, 365, 399, 407, 604
BspPI GGATC 3 cut(s) 392, 405, 428
BspT107I GGYRCC 3 cut(s) 83, 363, 602
BspTNI GGTCTC 1 cut(s) 397
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 9 cut(s) 28, 51, 78, 79, 87, 88, 94, 387, 401
BssHII GCGCGC 1 cut(s) 259
BssMI GATC 6 cut(s) 397, 420, 464, 495, 654, 685
BssNI GRCGYC 1 cut(s) 364
BssT1I CCWWGG 4 cut(s) 28, 51, 387, 401
Bst2UI CCWGG 4 cut(s) 80, 89, 95, 344
Bst4CI ACNGT 1 cut(s) 675
BstACI GRCGYC 1 cut(s) 364
BstC8I GCNNGC 6 cut(s) 58, 107, 261, 368, 458, 648
BstDEI CTNAG 3 cut(s) 150, 461, 626
BstDSI CCRYGG 3 cut(s) 28, 51, 387
BstF5I GGATG 1 cut(s) 76
BstFNI CGCG 1 cut(s) 261
BstH2I RGCGCY 2 cut(s) 367, 580
BstHHI GCGC 4 cut(s) 261, 263, 366, 579
BstKTI GATC 6 cut(s) 400, 423, 467, 498, 657, 688
BstMAI GTCTC 2 cut(s) 179, 397
BstMBI GATC 6 cut(s) 397, 420, 464, 495, 654, 685
BstMCI CGRYCG 2 cut(s) 498, 688
BstMWI GCNNNNNNNGC 5 cut(s) 90, 106, 145, 466, 656
BstNI CCWGG 4 cut(s) 80, 89, 95, 344
BstSCI CCNGG 6 cut(s) 34, 78, 87, 93, 342, 416
BstSLI GKGCMC 1 cut(s) 86
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 2 cut(s) 481, 671
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
Bsu15I ATCGAT 2 cut(s) 494, 684
BsuRI GGCC 6 cut(s) 34, 60, 93, 105, 148, 631
BsuTUI ATCGAT 2 cut(s) 494, 684
BtgI CCRYGG 3 cut(s) 28, 51, 387
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 328
Cac8I GCNNGC 6 cut(s) 58, 107, 261, 368, 458, 648
CfoI GCGC 4 cut(s) 261, 263, 366, 579
Cfr13I GGNCC 5 cut(s) 32, 58, 91, 405, 630
ClaI ATCGAT 2 cut(s) 494, 684
Csp6I GTAC 3 cut(s) 10, 274, 512
CviAII CATG 6 cut(s) 29, 52, 66, 198, 282, 388
CviQI GTAC 3 cut(s) 10, 274, 512
DdeI CTNAG 3 cut(s) 150, 461, 626
DinI GGCGCC 1 cut(s) 365
DpnI GATC 6 cut(s) 399, 422, 466, 497, 656, 687
DpnII GATC 6 cut(s) 397, 420, 464, 495, 654, 685
Eco130I CCWWGG 4 cut(s) 28, 51, 387, 401
Eco31I GGTCTC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 405
Eco57I CTGAAG 1 cut(s) 649
Eco88I CYCGRG 2 cut(s) 323, 584
EcoRII CCWGG 4 cut(s) 78, 87, 93, 342
EcoT14I CCWWGG 4 cut(s) 28, 51, 387, 401
EgeI GGCGCC 1 cut(s) 365
EheI GGCGCC 1 cut(s) 365
ErhI CCWWGG 4 cut(s) 28, 51, 387, 401
FaeI CATG 6 cut(s) 32, 55, 69, 201, 285, 391
FaqI GGGAC 1 cut(s) 150
FatI CATG 6 cut(s) 28, 51, 65, 197, 281, 387
FauI CCCGC 1 cut(s) 49
Fnu4HI GCNGC 2 cut(s) 470, 660
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 2 cut(s) 470, 660
FspBI CTAG 1 cut(s) 592
GlaI GCGC 4 cut(s) 260, 262, 365, 578
GluI GCNGC 2 cut(s) 470, 660
HaeII RGCGCY 2 cut(s) 367, 580
HaeIII GGCC 6 cut(s) 34, 60, 93, 105, 148, 631
HapII CCGG 4 cut(s) 35, 418, 433, 597
HhaI GCGC 4 cut(s) 261, 263, 366, 579
Hin1I GRCGYC 1 cut(s) 364
Hin1II CATG 6 cut(s) 32, 55, 69, 201, 285, 391
Hin6I GCGC 4 cut(s) 259, 261, 364, 577
HinP1I GCGC 4 cut(s) 259, 261, 364, 577
HinfI GANTC 6 cut(s) 187, 429, 448, 491, 638, 681
HpaII CCGG 4 cut(s) 35, 418, 433, 597
HphI GGTGA 1 cut(s) 438
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 3 cut(s) 153, 397, 441
Hpy188III TCNNGA 4 cut(s) 488, 499, 678, 689
Hpy8I GTNNAC 1 cut(s) 41
HpyAV CCTTC 3 cut(s) 202, 483, 673
HpyCH4III ACNGT 1 cut(s) 675
HpyCH4V TGCA 1 cut(s) 552
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 106, 145, 466, 656
HpyF3I CTNAG 3 cut(s) 150, 461, 626
Hsp92I GRCGYC 1 cut(s) 364
Hsp92II CATG 6 cut(s) 32, 55, 69, 201, 285, 391
HspAI GCGC 4 cut(s) 259, 261, 364, 577
KasI GGCGCC 1 cut(s) 363
Kzo9I GATC 6 cut(s) 397, 420, 464, 495, 654, 685
LmnI GCTCC 1 cut(s) 480
Lsp1109I GCAGC 2 cut(s) 481, 671
LweI GCATC 1 cut(s) 61
MaeI CTAG 1 cut(s) 592
MaeIII GTNAC 1 cut(s) 426
MalI GATC 6 cut(s) 399, 422, 466, 497, 656, 687
MboI GATC 6 cut(s) 397, 420, 464, 495, 654, 685
MboII GAAGA 2 cut(s) 166, 574
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 3 cut(s) 86, 330, 591
MluCI AATT 1 cut(s) 442
Mly113I GGCGCC 1 cut(s) 364
MlyI GAGTC 4 cut(s) 181, 423, 457, 647
MnlI CCTC 9 cut(s) 71, 128, 159, 168, 300, 354, 544, 593, 609
MspA1I CMGCKG 1 cut(s) 370
MspI CCGG 4 cut(s) 35, 418, 433, 597
MspR9I CCNGG 6 cut(s) 36, 80, 89, 95, 344, 418
Mva1269I GAATGC 1 cut(s) 554
MvaI CCWGG 4 cut(s) 80, 89, 95, 344
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 5 cut(s) 90, 106, 145, 466, 656
NarI GGCGCC 1 cut(s) 364
NciI CCSGG 2 cut(s) 36, 418
NcoI CCATGG 3 cut(s) 28, 51, 387
NdeII GATC 6 cut(s) 397, 420, 464, 495, 654, 685
NlaIII CATG 6 cut(s) 32, 55, 69, 201, 285, 391
NlaIV GGNNCC 5 cut(s) 85, 365, 399, 407, 604
NmuCI GTSAC 1 cut(s) 426
PalAI GGCGCGCC 1 cut(s) 259
PasI CCCWGGG 2 cut(s) 79, 88
PauI GCGCGC 1 cut(s) 259
PctI GAATGC 1 cut(s) 554
PfeI GAWTC 2 cut(s) 491, 681
PfoI TCCNGGA 2 cut(s) 342, 416
PkrI GCNGC 2 cut(s) 471, 661
Ple19I CGATCG 2 cut(s) 498, 688
PleI GAGTC 4 cut(s) 181, 423, 456, 646
PluTI GGCGCC 1 cut(s) 367
PpsI GAGTC 4 cut(s) 181, 423, 456, 646
Psp6I CCWGG 4 cut(s) 78, 87, 93, 342
PspGI CCWGG 4 cut(s) 78, 87, 93, 342
PspN4I GGNNCC 5 cut(s) 85, 365, 399, 407, 604
PspPI GGNCC 5 cut(s) 32, 58, 91, 405, 630
PsuI RGATCY 1 cut(s) 397
PteI GCGCGC 1 cut(s) 259
PvuI CGATCG 2 cut(s) 498, 688
PvuII CAGCTG 1 cut(s) 370
RsaI GTAC 3 cut(s) 11, 275, 513
RsaNI GTAC 3 cut(s) 10, 274, 512
SatI GCNGC 2 cut(s) 470, 660
Sau3AI GATC 6 cut(s) 397, 420, 464, 495, 654, 685
Sau96I GGNCC 5 cut(s) 32, 58, 91, 405, 630
SchI GAGTC 4 cut(s) 181, 423, 457, 647
ScrFI CCNGG 6 cut(s) 36, 80, 89, 95, 344, 418
SduI GDGCHC 3 cut(s) 86, 330, 591
SetI ASST 6 cut(s) 162, 232, 372, 428, 462, 652
SfaNI GCATC 1 cut(s) 61
SfoI GGCGCC 1 cut(s) 365
SgsI GGCGCGCC 1 cut(s) 259
SinI GGWCC 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 1 cut(s) 442
SsiI CCGC 2 cut(s) 56, 531
SspDI GGCGCC 1 cut(s) 363
SspMI CTAG 1 cut(s) 592
StyD4I CCNGG 6 cut(s) 34, 78, 87, 93, 342, 416
StyI CCWWGG 4 cut(s) 28, 51, 387, 401
TaaI ACNGT 1 cut(s) 675
TaqI TCGA 3 cut(s) 173, 494, 684
TasI AATT 1 cut(s) 442
TfiI GAWTC 2 cut(s) 491, 681
TscAI CASTG 1 cut(s) 335
TseFI GTSAC 1 cut(s) 426
TseI GCWGC 2 cut(s) 469, 659
Tsp45I GTSAC 1 cut(s) 426
TspDTI ATGAA 2 cut(s) 298, 581
TspGWI ACGGA 1 cut(s) 522
TspRI CASTG 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 405
XspI CTAG 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.