Rmu_sc0001773.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001773.1
OG0000633
Physical Location & Seq
Reverse (-)
56347 .. 56715
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001773.1_g000009.1.cds

Sequence Viewer

Length: 369 bp
atgaacgagccagaagtgacaggagagggtcgaagtgtcgcccgggcactgatattctctctgggaacttcatcagcagaagcgccaggtgttcaagaaatgcatggtctcggatccttggactcgatagtcccggataaggtgactccggtatcggagttggagtctatgcgagctgagatcgcagccttaagggaacaatccaggatcgatcgggaacaacacagtaccgatagggaaacaaaccgccttacgcaacagagaatgcaggatttggaagatgaaaaacagcgctggcccgagcactggacaggaggcaccagcacaacgaggcactcacccaggccctggctagagcatctcagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.77

Weight (kDa)

5.19

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 317
AccB7I CCANNNNNTGG 1 cut(s) 348
AciI CCGC 1 cut(s) 247
AclWI GGATC 3 cut(s) 108, 121, 215
AfaI GTAC 1 cut(s) 229
AfeI AGCGCT 1 cut(s) 293
AfiI CCNNNNNNNGG 3 cut(s) 139, 306, 348
AflII CTTAAG 1 cut(s) 190
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 4 cut(s) 85, 203, 341, 347
AluBI AGCT 2 cut(s) 176, 366
AluI AGCT 2 cut(s) 176, 366
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 3 cut(s) 108, 121, 215
AlwNI CAGNNNCTG 1 cut(s) 348
Ama87I CYCGRG 2 cut(s) 42, 299
Aor51HI AGCGCT 1 cut(s) 293
AoxI GGCC 2 cut(s) 296, 344
ApeKI GCWGC 1 cut(s) 185
AspLEI GCGC 2 cut(s) 85, 294
AspS9I GGNCC 2 cut(s) 297, 345
AsuC2I CCSGG 3 cut(s) 43, 44, 134
AsuHPI GGTGA 2 cut(s) 154, 330
AvaI CYCGRG 2 cut(s) 42, 299
BaeGI GKGCMC 1 cut(s) 49
BaeI ACNNNNGTAYC 2 cut(s) 135, 168
BamHI GGATCC 1 cut(s) 113
BanI GGYRCC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 197
BciT130I CCWGG 4 cut(s) 87, 205, 343, 349
BcnI CCSGG 3 cut(s) 43, 44, 134
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 2 cut(s) 353, 367
BfoI RGCGCY 2 cut(s) 86, 295
BfrI CTTAAG 1 cut(s) 190
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 7 cut(s) 43, 44, 87, 134, 205, 343, 349
BmeT110I CYCGRG 2 cut(s) 42, 299
BmgT120I GGNCC 2 cut(s) 297, 345
BmiI GGNNCC 2 cut(s) 115, 319
BmrFI CCNGG 7 cut(s) 43, 44, 87, 134, 205, 343, 349
BpuMI CCSGG 3 cut(s) 43, 44, 134
Bsa29I ATCGAT 1 cut(s) 210
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 4 cut(s) 42, 117, 341, 347
BsaWI WCCGGW 1 cut(s) 148
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 306, 348
Bse1I ACTGG 1 cut(s) 311
BseBI CCWGG 4 cut(s) 87, 205, 343, 349
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 4 cut(s) 42, 117, 341, 347
BseLI CCNNNNNNNGG 3 cut(s) 139, 306, 348
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 311
BseSI GKGCMC 1 cut(s) 49
BseXI GCAGC 1 cut(s) 197
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 2 cut(s) 298, 346
BshNI GGYRCC 1 cut(s) 317
BshVI ATCGAT 1 cut(s) 210
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 306
BsiHKCI CYCGRG 2 cut(s) 42, 299
BsiSI CCGG 3 cut(s) 43, 134, 149
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 3 cut(s) 139, 306, 348
BsmAI GTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 270
BsnI GGCC 2 cut(s) 298, 346
Bso31I GGTCTC 1 cut(s) 113
BsoBI CYCGRG 2 cut(s) 42, 299
Bsp1286I GDGCHC 2 cut(s) 49, 306
Bsp143I GATC 4 cut(s) 113, 180, 207, 211
BspACI CCGC 1 cut(s) 247
BspANI GGCC 2 cut(s) 298, 346
BspCNI CTCAG 1 cut(s) 169
BspDI ATCGAT 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 115, 319
BspPI GGATC 3 cut(s) 108, 121, 215
BspT107I GGYRCC 1 cut(s) 317
BspTI CTTAAG 1 cut(s) 190
BspTNI GGTCTC 1 cut(s) 113
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 4 cut(s) 42, 117, 341, 347
BssMI GATC 4 cut(s) 113, 180, 207, 211
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 4 cut(s) 87, 205, 343, 349
Bst4CI ACNGT 1 cut(s) 227
BstAFI CTTAAG 1 cut(s) 190
BstC8I GCNNGC 2 cut(s) 174, 296
BstDEI CTNAG 2 cut(s) 177, 362
BstH2I RGCGCY 2 cut(s) 86, 295
BstHHI GCGC 2 cut(s) 85, 294
BstKTI GATC 4 cut(s) 116, 183, 210, 214
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 4 cut(s) 113, 180, 207, 211
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 4 cut(s) 87, 205, 343, 349
BstSCI CCNGG 7 cut(s) 41, 42, 85, 132, 203, 341, 347
BstSLI GKGCMC 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
Bsu15I ATCGAT 1 cut(s) 210
BsuRI GGCC 2 cut(s) 298, 346
BsuTUI ATCGAT 1 cut(s) 210
BtsIMutI CAGTG 2 cut(s) 47, 304
Cac8I GCNNGC 2 cut(s) 174, 296
CaiI CAGNNNCTG 1 cut(s) 348
CfoI GCGC 2 cut(s) 85, 294
Cfr13I GGNCC 2 cut(s) 297, 345
Cfr9I CCCGGG 1 cut(s) 42
ClaI ATCGAT 1 cut(s) 210
Csp6I GTAC 1 cut(s) 228
CviAII CATG 1 cut(s) 104
CviJI RGCY 7 cut(s) 10, 176, 188, 298, 346, 352, 366
CviKI_1 RGCY 7 cut(s) 10, 176, 188, 298, 346, 352, 366
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 2 cut(s) 177, 362
DpnI GATC 4 cut(s) 115, 182, 209, 213
DpnII GATC 4 cut(s) 113, 180, 207, 211
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 113
Eco47III AGCGCT 1 cut(s) 293
Eco88I CYCGRG 2 cut(s) 42, 299
EcoO109I RGGNCCY 1 cut(s) 345
EcoRII CCWGG 4 cut(s) 85, 203, 341, 347
EcoT14I CCWWGG 1 cut(s) 117
EcoT22I ATGCAT 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 107
FaiI YATR 2 cut(s) 105, 170
FaqI GGGAC 1 cut(s) 116
FatI CATG 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 2 cut(s) 353, 367
GlaI GCGC 2 cut(s) 84, 293
GluI GCNGC 1 cut(s) 186
HaeII RGCGCY 2 cut(s) 86, 295
HaeIII GGCC 2 cut(s) 298, 346
HapII CCGG 3 cut(s) 43, 134, 149
HhaI GCGC 2 cut(s) 85, 294
Hin1II CATG 1 cut(s) 107
Hin6I GCGC 2 cut(s) 83, 292
HinP1I GCGC 2 cut(s) 83, 292
HinfI GANTC 3 cut(s) 122, 145, 164
HpaII CCGG 3 cut(s) 43, 134, 149
HphI GGTGA 2 cut(s) 154, 330
Hpy188I TCNGA 2 cut(s) 113, 157
Hpy188III TCNNGA 2 cut(s) 95, 215
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4V TGCA 2 cut(s) 103, 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 2 cut(s) 177, 362
Hsp92II CATG 1 cut(s) 107
HspAI GCGC 2 cut(s) 83, 292
Kzo9I GATC 4 cut(s) 113, 180, 207, 211
Lsp1109I GCAGC 1 cut(s) 197
MaeI CTAG 2 cut(s) 353, 367
MaeIII GTNAC 2 cut(s) 16, 142
MalI GATC 4 cut(s) 115, 182, 209, 213
MboI GATC 4 cut(s) 113, 180, 207, 211
MboII GAAGA 1 cut(s) 290
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 2 cut(s) 49, 306
MlyI GAGTC 3 cut(s) 116, 139, 173
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 3 cut(s) 19, 308, 324
Mph1103I ATGCAT 1 cut(s) 105
MseI TTAA 1 cut(s) 191
MspCI CTTAAG 1 cut(s) 190
MspI CCGG 3 cut(s) 43, 134, 149
MspR9I CCNGG 7 cut(s) 43, 44, 87, 134, 205, 343, 349
Mva1269I GAATGC 1 cut(s) 270
MvaI CCWGG 4 cut(s) 87, 205, 343, 349
MwoI GCNNNNNNNGC 1 cut(s) 182
NciI CCSGG 3 cut(s) 43, 44, 134
NdeII GATC 4 cut(s) 113, 180, 207, 211
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 2 cut(s) 115, 319
NmuCI GTSAC 2 cut(s) 16, 142
NsiI ATGCAT 1 cut(s) 105
PctI GAATGC 1 cut(s) 270
PflMI CCANNNNNTGG 1 cut(s) 348
PfoI TCCNGGA 2 cut(s) 132, 203
PkrI GCNGC 1 cut(s) 187
Ple19I CGATCG 1 cut(s) 214
PleI GAGTC 3 cut(s) 116, 139, 172
PpsI GAGTC 3 cut(s) 116, 139, 172
Psp6I CCWGG 4 cut(s) 85, 203, 341, 347
PspGI CCWGG 4 cut(s) 85, 203, 341, 347
PspN4I GGNNCC 2 cut(s) 115, 319
PspPI GGNCC 2 cut(s) 297, 345
PstNI CAGNNNCTG 1 cut(s) 348
PsuI RGATCY 1 cut(s) 113
PvuI CGATCG 1 cut(s) 214
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 4 cut(s) 113, 180, 207, 211
Sau96I GGNCC 2 cut(s) 297, 345
SchI GAGTC 3 cut(s) 116, 139, 173
ScrFI CCNGG 7 cut(s) 43, 44, 87, 134, 205, 343, 349
SduI GDGCHC 2 cut(s) 49, 306
SetI ASST 4 cut(s) 91, 144, 178, 368
SmaI CCCGGG 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
SrfI GCCCGGGC 1 cut(s) 44
SsiI CCGC 1 cut(s) 247
SspMI CTAG 2 cut(s) 353, 367
StyD4I CCNGG 7 cut(s) 41, 42, 85, 132, 203, 341, 347
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 227
TaqI TCGA 3 cut(s) 31, 125, 210
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TscAI CASTG 2 cut(s) 54, 311
TseFI GTSAC 2 cut(s) 16, 142
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 2 cut(s) 16, 142
TspDTI ATGAA 3 cut(s) 17, 60, 297
TspMI CCCGGG 1 cut(s) 42
TspRI CASTG 2 cut(s) 54, 311
Van91I CCANNNNNTGG 1 cut(s) 348
Vha464I CTTAAG 1 cut(s) 190
XmaI CCCGGG 1 cut(s) 42
XspI CTAG 2 cut(s) 353, 367
Zsp2I ATGCAT 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.