Rmu_sc0003486.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003486.1
OG0000633
Physical Location & Seq
Reverse (-)
14986 .. 15513
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003486.1_g000003.1.cds

Sequence Viewer

Length: 528 bp
atgcgagctgagatcgcagccttcaggaagcagtccaggatcgatagggaacaacggagtaccgataaggaaacaaaccgcctcacgcaacagagaatgcaggatttggaagatgaaaacacggcgctggcccgagcactagacaggaggcaccagcacaacgaggcactcactcaggccctggctagagcatcccagctagcaggtatgaacgctgccccgataacaggagacaccagcaccacaccagcacttcctacggaaggcagtcagaggttaatcaaggtacgggtagacttattccaggaaagcttgaggcatctaccaccaccgccgttaccacagccagttcacagtatcacaccggtacccgacgcaaacacggcattactcgtacaaatgagcaactccttacatgccctccaggcaagggtacaggccacagaaaatagagacacatggagagctatgaatagttacgaggaccgctcggggcctttcacccaacaggttaggggagccatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.62

Weight (kDa)

9.49

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 194
Acc65I GGTACC 1 cut(s) 367
AccB1I GGYRCC 2 cut(s) 150, 367
AccBSI CCGCTC 1 cut(s) 489
AccI GTMKAC 1 cut(s) 294
AciI CCGC 3 cut(s) 79, 332, 487
AclWI GGATC 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 7
AfaI GTAC 5 cut(s) 61, 288, 369, 396, 435
AfiI CCNNNNNNNGG 3 cut(s) 227, 263, 430
AgeI ACCGGT 1 cut(s) 364
AjnI CCWGG 4 cut(s) 35, 180, 303, 423
AluBI AGCT 4 cut(s) 8, 199, 312, 467
AluI AGCT 4 cut(s) 8, 199, 312, 467
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 2 cut(s) 225, 447
AlwI GGATC 1 cut(s) 47
AlwNI CAGNNNCTG 1 cut(s) 181
Ama87I CYCGRG 2 cut(s) 132, 490
AoxI GGCC 4 cut(s) 129, 177, 438, 494
ApeKI GCWGC 2 cut(s) 17, 215
AsiGI ACCGGT 1 cut(s) 364
Asp718I GGTACC 1 cut(s) 367
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 4 cut(s) 130, 178, 484, 494
AsuHPI GGTGA 1 cut(s) 493
AsuNHI GCTAGC 1 cut(s) 199
AvaI CYCGRG 2 cut(s) 132, 490
AvaII GGWCC 1 cut(s) 484
BaeI ACNNNNGTAYC 2 cut(s) 351, 384
BanI GGYRCC 2 cut(s) 150, 367
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 2 cut(s) 29, 202
BceAI ACGGC 3 cut(s) 138, 319, 399
BciT130I CCWGG 4 cut(s) 37, 182, 305, 425
BcoDI GTCTC 2 cut(s) 225, 447
BfaI CTAG 3 cut(s) 140, 186, 200
BfoI RGCGCY 1 cut(s) 128
BfuAI ACCTGC 1 cut(s) 194
BglI GCCNNNNNGGC 1 cut(s) 425
BisI GCNGC 2 cut(s) 18, 216
BlsI GCNGC 2 cut(s) 19, 217
Bme1390I CCNGG 4 cut(s) 37, 182, 305, 425
Bme18I GGWCC 1 cut(s) 484
BmeT110I CYCGRG 2 cut(s) 132, 490
BmgT120I GGNCC 4 cut(s) 130, 178, 484, 494
BmiI GGNNCC 4 cut(s) 152, 369, 495, 520
BmrFI CCNGG 4 cut(s) 37, 182, 305, 425
BmsI GCATC 2 cut(s) 200, 328
BmtI GCTAGC 1 cut(s) 203
BplI GAGNNNNNCTC 2 cut(s) 473, 505
BpmI CTGGAG 1 cut(s) 407
BpuEI CTTGAG 1 cut(s) 334
Bsa29I ATCGAT 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 364
BsaXI ACNNNNNCTCC 2 cut(s) 405, 435
Bsc4I CCNNNNNNNGG 3 cut(s) 227, 263, 430
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 347
BseBI CCWGG 4 cut(s) 37, 182, 305, 425
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 191
BseLI CCNNNNNNNGG 3 cut(s) 227, 263, 430
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 347
BseXI GCAGC 2 cut(s) 29, 202
BseYI CCCAGC 1 cut(s) 195
BshFI GGCC 4 cut(s) 131, 179, 440, 496
BshNI GGYRCC 2 cut(s) 150, 367
BshTI ACCGGT 1 cut(s) 364
BshVI ATCGAT 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 139
BsiHKCI CYCGRG 2 cut(s) 132, 490
BsiSI CCGG 1 cut(s) 365
BslI CCNNNNNNNGG 3 cut(s) 227, 263, 430
BsmAI GTCTC 2 cut(s) 225, 447
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 4 cut(s) 131, 179, 440, 496
BsoBI CYCGRG 2 cut(s) 132, 490
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 2 cut(s) 12, 39
BspACI CCGC 3 cut(s) 79, 332, 487
BspANI GGCC 4 cut(s) 131, 179, 440, 496
BspCNI CTCAG 1 cut(s) 187
BspDI ATCGAT 1 cut(s) 42
BspLI GGNNCC 4 cut(s) 152, 369, 495, 520
BspMI ACCTGC 1 cut(s) 194
BspOI GCTAGC 1 cut(s) 203
BspPI GGATC 1 cut(s) 47
BspT107I GGYRCC 2 cut(s) 150, 367
BsrBI CCGCTC 1 cut(s) 489
BsrFI RCCGGY 1 cut(s) 364
BsrI ACTGG 1 cut(s) 347
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 2 cut(s) 12, 39
Bst2UI CCWGG 4 cut(s) 37, 182, 305, 425
Bst4CI ACNGT 1 cut(s) 356
BstC8I GCNNGC 3 cut(s) 6, 129, 201
BstDEI CTNAG 2 cut(s) 9, 174
BstENI CCTNNNNNAGG 1 cut(s) 261
BstF5I GGATG 1 cut(s) 191
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 2 cut(s) 15, 42
BstMAI GTCTC 2 cut(s) 225, 447
BstMBI GATC 2 cut(s) 12, 39
BstMWI GCNNNNNNNGC 3 cut(s) 14, 383, 425
BstNI CCWGG 4 cut(s) 37, 182, 305, 425
BstNSI RCATGY 1 cut(s) 419
BstSCI CCNGG 4 cut(s) 35, 180, 303, 423
BstV1I GCAGC 2 cut(s) 29, 202
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 4 cut(s) 131, 179, 440, 496
BsuTUI ATCGAT 1 cut(s) 42
BtsCI GGATG 1 cut(s) 191
BveI ACCTGC 1 cut(s) 194
Cac8I GCNNGC 3 cut(s) 6, 129, 201
CaiI CAGNNNCTG 1 cut(s) 181
CfoI GCGC 1 cut(s) 127
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 4 cut(s) 130, 178, 484, 494
ClaI ATCGAT 1 cut(s) 42
CseI GACGC 1 cut(s) 383
Csp6I GTAC 5 cut(s) 60, 287, 368, 395, 434
CspAI ACCGGT 1 cut(s) 364
CviAII CATG 2 cut(s) 416, 459
CviQI GTAC 5 cut(s) 60, 287, 368, 395, 434
DdeI CTNAG 2 cut(s) 9, 174
DpnI GATC 2 cut(s) 14, 41
DpnII GATC 2 cut(s) 12, 39
Eco47I GGWCC 1 cut(s) 484
Eco57I CTGAAG 1 cut(s) 7
Eco88I CYCGRG 2 cut(s) 132, 490
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoO109I RGGNCCY 2 cut(s) 178, 494
EcoRII CCWGG 4 cut(s) 35, 180, 303, 423
FaeI CATG 2 cut(s) 419, 462
FaiI YATR 4 cut(s) 209, 417, 460, 470
FatI CATG 2 cut(s) 415, 458
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 2 cut(s) 18, 216
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 2 cut(s) 18, 216
FspBI CTAG 3 cut(s) 140, 186, 200
GlaI GCGC 1 cut(s) 126
GluI GCNGC 2 cut(s) 18, 216
GsaI CCCAGC 1 cut(s) 199
GsuI CTGGAG 1 cut(s) 407
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 4 cut(s) 131, 179, 440, 496
HapII CCGG 1 cut(s) 365
HgaI GACGC 1 cut(s) 383
HhaI GCGC 1 cut(s) 127
Hin1II CATG 2 cut(s) 419, 462
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HindIII AAGCTT 1 cut(s) 310
HpaII CCGG 1 cut(s) 365
HphI GGTGA 1 cut(s) 493
Hpy166II GTNNAC 2 cut(s) 295, 352
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 2 cut(s) 295, 352
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 2 cut(s) 31, 257
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 383, 425
HpyF3I CTNAG 2 cut(s) 9, 174
Hsp92II CATG 2 cut(s) 419, 462
HspAI GCGC 1 cut(s) 125
KpnI GGTACC 1 cut(s) 371
Kzo9I GATC 2 cut(s) 12, 39
LmnI GCTCC 1 cut(s) 518
Lsp1109I GCAGC 2 cut(s) 29, 202
LweI GCATC 2 cut(s) 200, 328
MaeI CTAG 3 cut(s) 140, 186, 200
MaeIII GTNAC 2 cut(s) 336, 476
MalI GATC 2 cut(s) 14, 41
MbiI CCGCTC 1 cut(s) 489
MboI GATC 2 cut(s) 12, 39
MboII GAAGA 1 cut(s) 122
MhlI GDGCHC 1 cut(s) 139
MnlI CCTC 7 cut(s) 92, 141, 157, 267, 309, 431, 475
MseI TTAA 1 cut(s) 278
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 4 cut(s) 37, 182, 305, 425
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 4 cut(s) 37, 182, 305, 425
MwoI GCNNNNNNNGC 3 cut(s) 14, 383, 425
NdeII GATC 2 cut(s) 12, 39
NheI GCTAGC 1 cut(s) 199
NlaIII CATG 2 cut(s) 419, 462
NlaIV GGNNCC 4 cut(s) 152, 369, 495, 520
NspI RCATGY 1 cut(s) 419
PctI GAATGC 1 cut(s) 102
PfoI TCCNGGA 2 cut(s) 35, 303
PinAI ACCGGT 1 cut(s) 364
PkrI GCNGC 2 cut(s) 19, 217
Psp6I CCWGG 4 cut(s) 35, 180, 303, 423
PspFI CCCAGC 1 cut(s) 195
PspGI CCWGG 4 cut(s) 35, 180, 303, 423
PspN4I GGNNCC 4 cut(s) 152, 369, 495, 520
PspPI GGNCC 4 cut(s) 130, 178, 484, 494
PstNI CAGNNNCTG 1 cut(s) 181
RsaI GTAC 5 cut(s) 61, 288, 369, 396, 435
RsaNI GTAC 5 cut(s) 60, 287, 368, 395, 434
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 2 cut(s) 18, 216
Sau3AI GATC 2 cut(s) 12, 39
Sau96I GGNCC 4 cut(s) 130, 178, 484, 494
ScrFI CCNGG 4 cut(s) 37, 182, 305, 425
SduI GDGCHC 1 cut(s) 139
SetI ASST 8 cut(s) 10, 201, 208, 278, 288, 314, 469, 513
SfaNI GCATC 2 cut(s) 200, 328
SinI GGWCC 1 cut(s) 484
SmlI CTYRAG 1 cut(s) 313
SmoI CTYRAG 1 cut(s) 313
SsiI CCGC 3 cut(s) 79, 332, 487
SspMI CTAG 3 cut(s) 140, 186, 200
StyD4I CCNGG 4 cut(s) 35, 180, 303, 423
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 1 cut(s) 42
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TseI GCWGC 2 cut(s) 17, 215
TspDTI ATGAA 3 cut(s) 129, 224, 485
TspGWI ACGGA 2 cut(s) 70, 275
VpaK11BI GGWCC 1 cut(s) 484
XagI CCTNNNNNAGG 1 cut(s) 261
XceI RCATGY 1 cut(s) 419
XmiI GTMKAC 1 cut(s) 294
XspI CTAG 3 cut(s) 140, 186, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.